RNA–Protein interactions for RNA: ENST00000269137.11

SS18-201, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SS18, Length 1,836 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-201ENST00000269137 NUCB1Q02818 461 aa17.63■□□□□ 0.41
SS18-201ENST00000269137 CWF19L2Q2TBE0 894 aaKnown RBP17.63■□□□□ 0.41
SS18-201ENST00000269137 NEURL1BA8MQ27 555 aa17.63■□□□□ 0.41
SS18-201ENST00000269137 TTLL7Q6ZT98 887 aa17.63■□□□□ 0.41
SS18-201ENST00000269137 C9orf78Q9NZ63 289 aaPredicted RBP17.63■□□□□ 0.41
SS18-201ENST00000269137 ZNF831Q5JPB2 1677 aa17.62■□□□□ 0.41
SS18-201ENST00000269137 GRM8O00222 908 aa17.62■□□□□ 0.41
SS18-201ENST00000269137 ZNF772Q68DY9 489 aaPredicted RBP17.62■□□□□ 0.41
SS18-201ENST00000269137 MYD88Q99836 296 aa17.62■□□□□ 0.41
SS18-201ENST00000269137 NHSQ6T4R5 1651 aa17.62■□□□□ 0.41
SS18-201ENST00000269137 NUP188Q5SRE5 1749 aa17.61■□□□□ 0.41
SS18-201ENST00000269137 RGS3P49796 1198 aa17.61■□□□□ 0.41
SS18-201ENST00000269137 ATP6V1AP38606 617 aa17.61■□□□□ 0.41
SS18-201ENST00000269137 GCKRQ14397 625 aa17.61■□□□□ 0.41
SS18-201ENST00000269137 IL6STP40189 918 aaPredicted RBP17.6■□□□□ 0.41
SS18-201ENST00000269137 CHD1LQ86WJ1 897 aa17.6■□□□□ 0.41
SS18-201ENST00000269137 ZBTB1Q9Y2K1 713 aa17.59■□□□□ 0.41
SS18-201ENST00000269137 SBF2Q86WG5 1849 aa17.59■□□□□ 0.41
SS18-201ENST00000269137 MTX1Q13505 466 aa17.58■□□□□ 0.41
SS18-201ENST00000269137 ITPK1Q13572 414 aa17.58■□□□□ 0.41
SS18-201ENST00000269137 ANKRD45Q5TZF3 282 aa17.58■□□□□ 0.41
SS18-201ENST00000269137 SSH3Q8TE77 659 aa17.58■□□□□ 0.41
SS18-201ENST00000269137 RREB1Q92766 1687 aa17.58■□□□□ 0.4
SS18-201ENST00000269137 BTAF1O14981 1849 aa17.58■□□□□ 0.4
SS18-201ENST00000269137 PNMA6EA0A0J9YXQ4 647 aa17.58■□□□□ 0.4
SS18-201ENST00000269137 RBM6P78332 1123 aaKnown RBP17.58■□□□□ 0.4
SS18-201ENST00000269137 INTS5Q6P9B9 1019 aaKnown RBP17.58■□□□□ 0.4
SS18-201ENST00000269137 KIF6Q6ZMV9 814 aa17.58■□□□□ 0.4
SS18-201ENST00000269137 CCDC87Q9NVE4 849 aa17.58■□□□□ 0.4
SS18-201ENST00000269137 POLA2Q14181 598 aa17.57■□□□□ 0.4
SS18-201ENST00000269137 FAM182BQ5T319 152 aa17.57■□□□□ 0.4
SS18-201ENST00000269137 PTF1AQ7RTS3 328 aa17.57■□□□□ 0.4
SS18-201ENST00000269137 FBXO41Q8TF61 875 aa17.57■□□□□ 0.4
SS18-201ENST00000269137 ZBTB3Q9H5J0 574 aa17.57■□□□□ 0.4
SS18-201ENST00000269137 COL15A1P39059 1388 aa17.57■□□□□ 0.4
SS18-201ENST00000269137 MAP3K15Q6ZN16 1313 aa17.57■□□□□ 0.4
SS18-201ENST00000269137 AFDNP55196 1824 aaKnown RBP17.57■□□□□ 0.4
SS18-201ENST00000269137 PDE4AP27815 886 aa17.56■□□□□ 0.4
SS18-201ENST00000269137 CRKLP46109 303 aaKnown RBP17.56■□□□□ 0.4
SS18-201ENST00000269137 TRIM28Q13263 835 aaKnown RBP17.56■□□□□ 0.4
SS18-201ENST00000269137 PPP1R42Q7Z4L9 355 aa17.56■□□□□ 0.4
SS18-201ENST00000269137 ATP5J2-PTCD1G3V325 749 aa17.56■□□□□ 0.4
SS18-201ENST00000269137 EIF5P55010 431 aaKnown RBP17.56■□□□□ 0.4
SS18-201ENST00000269137 TCIRG1Q13488 830 aa17.56■□□□□ 0.4
SS18-201ENST00000269137 CCDC191Q8NCU4 936 aa17.56■□□□□ 0.4
SS18-201ENST00000269137 LNPKQ9C0E8 428 aa17.56■□□□□ 0.4
SS18-201ENST00000269137 COL5A3P25940 1745 aaPredicted RBP17.55■□□□□ 0.4
SS18-201ENST00000269137 KRT27Q7Z3Y8 459 aa17.55■□□□□ 0.4
SS18-201ENST00000269137 KAZALD1Q96I82 304 aa17.55■□□□□ 0.4
SS18-201ENST00000269137 ISCA1Q9BUE6 129 aa17.55■□□□□ 0.4
SS18-201ENST00000269137 CWC25Q9NXE8 425 aaPredicted RBP17.55■□□□□ 0.4
SS18-201ENST00000269137 ZNF330Q9Y3S2 320 aaPredicted RBP17.55■□□□□ 0.4
SS18-201ENST00000269137 MYH14Q7Z406 1995 aaKnown RBP17.55■□□□□ 0.4
SS18-201ENST00000269137 ERVV-1B6SEH8 477 aa17.54■□□□□ 0.4
SS18-201ENST00000269137 GIGYF2Q6Y7W6 1299 aaKnown RBP17.54■□□□□ 0.4
SS18-201ENST00000269137 FAM196AQ6ZSG2 479 aa17.54■□□□□ 0.4
SS18-201ENST00000269137 SUCLG2Q96I99 432 aa17.54■□□□□ 0.4
SS18-201ENST00000269137 BCL11BQ9C0K0 894 aaPredicted RBP17.54■□□□□ 0.4
SS18-201ENST00000269137 BRWD3Q6RI45 1802 aa17.54■□□□□ 0.4
SS18-201ENST00000269137 H7C1W4 665 aa17.54■□□□□ 0.4
SS18-201ENST00000269137 SRGAP3O43295 1099 aa17.54■□□□□ 0.4
SS18-201ENST00000269137 NPM2Q86SE8 214 aaKnown RBP17.54■□□□□ 0.4
SS18-201ENST00000269137 A0A087WZG4 1122 aa17.53■□□□□ 0.4
SS18-201ENST00000269137 CASP7P55210 303 aa17.53■□□□□ 0.4
SS18-201ENST00000269137 HSP90AB3PQ58FF7 597 aa17.53■□□□□ 0.4
SS18-201ENST00000269137 BACH2Q9BYV9 841 aa17.52■□□□□ 0.4
SS18-201ENST00000269137 ZBTB47Q9UFB7 747 aaPredicted RBP17.52■□□□□ 0.4
SS18-201ENST00000269137 DZIP3Q86Y13 1208 aaKnown RBP17.51■□□□□ 0.39
SS18-201ENST00000269137 BICC1Q9H694 974 aaKnown RBP17.51■□□□□ 0.39
SS18-201ENST00000269137 CNTNAP4Q9C0A0 1308 aa17.51■□□□□ 0.39
SS18-201ENST00000269137 FAM161AQ3B820 660 aa17.51■□□□□ 0.39
SS18-201ENST00000269137 RC3H1Q5TC82 1133 aaKnown RBP17.51■□□□□ 0.39
SS18-201ENST00000269137 UBE3BQ7Z3V4 1068 aa17.51■□□□□ 0.39
SS18-201ENST00000269137 LINC00116Q8NCU8 138 aa17.51■□□□□ 0.39
SS18-201ENST00000269137 NOP58Q9Y2X3 529 aaKnown RBP17.51■□□□□ 0.39
SS18-201ENST00000269137 LY75O60449 1722 aa17.51■□□□□ 0.39
SS18-201ENST00000269137 RAB11FIP3O75154 756 aa17.5■□□□□ 0.39
SS18-201ENST00000269137 HLFQ16534 295 aa17.5■□□□□ 0.39
SS18-201ENST00000269137 EXOC6BQ9Y2D4 811 aa17.5■□□□□ 0.39
SS18-201ENST00000269137 RABL6Q3YEC7 729 aaPredicted RBP17.49■□□□□ 0.39
SS18-201ENST00000269137 ARXQ96QS3 562 aa17.49■□□□□ 0.39
SS18-201ENST00000269137 RBM19Q9Y4C8 960 aaKnown RBP17.49■□□□□ 0.39
SS18-201ENST00000269137 NUP98P52948 1817 aa17.49■□□□□ 0.39
SS18-201ENST00000269137 HSP90AB4PQ58FF6 505 aa17.49■□□□□ 0.39
SS18-201ENST00000269137 LRRCC1Q9C099 1032 aa17.49■□□□□ 0.39
SS18-201ENST00000269137 CCNL1Q9UK58 526 aaPredicted RBP17.49■□□□□ 0.39
SS18-201ENST00000269137 TBC1D2BQ9UPU7 963 aa17.49■□□□□ 0.39
SS18-201ENST00000269137 SURF6O75683 361 aaKnown RBP17.48■□□□□ 0.39
SS18-201ENST00000269137 RXRBP28702 533 aa17.48■□□□□ 0.39
SS18-201ENST00000269137 EPHA10Q5JZY3 1008 aa17.48■□□□□ 0.39
SS18-201ENST00000269137 ANKRD36CQ5JPF3 1778 aa17.48■□□□□ 0.39
SS18-201ENST00000269137 C8orf34Q49A92 452 aa17.47■□□□□ 0.39
SS18-201ENST00000269137 RGL2O15211 777 aa17.47■□□□□ 0.39
SS18-201ENST00000269137 SMARCA5O60264 1052 aaPredicted RBP17.47■□□□□ 0.39
SS18-201ENST00000269137 CAMTA2O94983 1202 aa17.47■□□□□ 0.39
SS18-201ENST00000269137 PCCAP05165 728 aaPredicted RBP17.47■□□□□ 0.39
SS18-201ENST00000269137 NLRP10Q86W26 655 aa17.47■□□□□ 0.39
SS18-201ENST00000269137 PLEKHM2Q8IWE5 1019 aa17.47■□□□□ 0.39
SS18-201ENST00000269137 JARID2Q92833 1246 aaPredicted RBP17.47■□□□□ 0.39
SS18-201ENST00000269137 APBB1O00213 710 aa17.46■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms