RNA–Protein interactions for RNA: ENST00000249923.7

COPB1-201, Transcript of coatomer protein complex subunit beta 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COPB1, Length 3,481 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPB1-201ENST00000249923 SPG7Q9UQ90 795 aa12.27□□□□□ -0.44
COPB1-201ENST00000249923 RNMTO43148 476 aaKnown RBP12.27□□□□□ -0.45
COPB1-201ENST00000249923 RAB11FIP3O75154 756 aa12.27□□□□□ -0.45
COPB1-201ENST00000249923 GIGYF1O75420 1035 aaPredicted RBP12.27□□□□□ -0.45
COPB1-201ENST00000249923 HOXB7P09629 217 aa12.27□□□□□ -0.45
COPB1-201ENST00000249923 INTS4Q96HW7 963 aaKnown RBP12.27□□□□□ -0.45
COPB1-201ENST00000249923 PDLIM2Q96JY6 352 aa12.27□□□□□ -0.45
COPB1-201ENST00000249923 CCDC173Q0VFZ6 552 aa12.27□□□□□ -0.45
COPB1-201ENST00000249923 MTX1Q13505 466 aa12.27□□□□□ -0.45
COPB1-201ENST00000249923 PDIA6Q15084 440 aa12.27□□□□□ -0.45
COPB1-201ENST00000249923 RUFY3Q7L099 469 aa12.27□□□□□ -0.45
COPB1-201ENST00000249923 GCP02774 474 aa12.26□□□□□ -0.45
COPB1-201ENST00000249923 PTH1RQ03431 593 aa12.26□□□□□ -0.45
COPB1-201ENST00000249923 KIF1BPQ96EK5 621 aa12.26□□□□□ -0.45
COPB1-201ENST00000249923 MAP3K2Q9Y2U5 619 aa12.26□□□□□ -0.45
COPB1-201ENST00000249923 ST3GAL1Q11201 340 aa12.26□□□□□ -0.45
COPB1-201ENST00000249923 ADCK5Q3MIX3 580 aa12.26□□□□□ -0.45
COPB1-201ENST00000249923 CWC27Q6UX04 472 aaKnown RBP12.26□□□□□ -0.45
COPB1-201ENST00000249923 PSME1Q06323 249 aa12.25□□□□□ -0.45
COPB1-201ENST00000249923 AK2P54819 239 aa12.25□□□□□ -0.45
COPB1-201ENST00000249923 MCM2P49736 904 aa12.24□□□□□ -0.45
COPB1-201ENST00000249923 LRSAM1Q6UWE0 723 aa12.24□□□□□ -0.45
COPB1-201ENST00000249923 TLR7Q9NYK1 1049 aaKnown RBP12.24□□□□□ -0.45
COPB1-201ENST00000249923 SASH1O94885 1247 aa12.24□□□□□ -0.45
COPB1-201ENST00000249923 TEFQ10587 303 aa12.24□□□□□ -0.45
COPB1-201ENST00000249923 MCCP23508 829 aa12.23□□□□□ -0.45
COPB1-201ENST00000249923 ANKRD24Q8TF21 1146 aa12.23□□□□□ -0.45
COPB1-201ENST00000249923 SUCLG2Q96I99 432 aa12.23□□□□□ -0.45
COPB1-201ENST00000249923 TAF6LQ9Y6J9 622 aa12.23□□□□□ -0.45
COPB1-201ENST00000249923 KDM6AO15550 1401 aaPredicted RBP12.23□□□□□ -0.45
COPB1-201ENST00000249923 DBF4Q9UBU7 674 aaPredicted RBP12.23□□□□□ -0.45
COPB1-201ENST00000249923 OVOS2A0A0G2JMS6 1433 aa12.23□□□□□ -0.45
COPB1-201ENST00000249923 IGKV5-2P06315 115 aa12.23□□□□□ -0.45
COPB1-201ENST00000249923 KCNH5Q8NCM2 988 aa12.23□□□□□ -0.45
COPB1-201ENST00000249923 GLI3P10071 1580 aa12.22□□□□□ -0.45
COPB1-201ENST00000249923 USP48Q86UV5 1035 aa12.22□□□□□ -0.45
COPB1-201ENST00000249923 KLHDC4Q8TBB5 520 aa12.22□□□□□ -0.45
COPB1-201ENST00000249923 DDX54Q8TDD1 881 aaKnown RBP12.22□□□□□ -0.45
COPB1-201ENST00000249923 SCN11AQ9UI33 1791 aa12.22□□□□□ -0.45
COPB1-201ENST00000249923 EPB41L2O43491 1005 aaKnown RBP12.22□□□□□ -0.45
COPB1-201ENST00000249923 ANKLE2Q86XL3 938 aa12.22□□□□□ -0.45
COPB1-201ENST00000249923 HYPKQ9NX55 129 aa12.22□□□□□ -0.45
COPB1-201ENST00000249923 ALS2Q96Q42 1657 aa12.22□□□□□ -0.45
COPB1-201ENST00000249923 KSR2Q6VAB6 950 aa12.21□□□□□ -0.45
COPB1-201ENST00000249923 EAF2Q96CJ1 260 aaPredicted RBP12.21□□□□□ -0.45
COPB1-201ENST00000249923 BICC1Q9H694 974 aaKnown RBP12.21□□□□□ -0.45
COPB1-201ENST00000249923 UTYO14607 1347 aa12.21□□□□□ -0.45
COPB1-201ENST00000249923 SLC39A6Q13433 755 aa12.21□□□□□ -0.45
COPB1-201ENST00000249923 PLEKHO1Q53GL0 409 aaPredicted RBP12.21□□□□□ -0.45
COPB1-201ENST00000249923 EPHA10Q5JZY3 1008 aa12.21□□□□□ -0.45
COPB1-201ENST00000249923 CNTROBQ8N137 903 aa12.21□□□□□ -0.45
COPB1-201ENST00000249923 TTC41PQ6P2S7 1318 aa12.21□□□□□ -0.46
COPB1-201ENST00000249923 LRP10Q7Z4F1 713 aa12.21□□□□□ -0.46
COPB1-201ENST00000249923 ZSCAN30Q86W11 494 aa12.21□□□□□ -0.46
COPB1-201ENST00000249923 FAM227BQ96M60 508 aa12.21□□□□□ -0.46
COPB1-201ENST00000249923 CNPY2Q9Y2B0 182 aa12.21□□□□□ -0.46
COPB1-201ENST00000249923 MRC1P22897 1456 aa12.2□□□□□ -0.46
COPB1-201ENST00000249923 LMTK3Q96Q04 1460 aa12.2□□□□□ -0.46
COPB1-201ENST00000249923 CHGBP05060 677 aa12.2□□□□□ -0.46
COPB1-201ENST00000249923 SYT1P21579 422 aa12.2□□□□□ -0.46
COPB1-201ENST00000249923 KCNB2Q92953 911 aa12.2□□□□□ -0.46
COPB1-201ENST00000249923 ERBB3P21860 1342 aa12.2□□□□□ -0.46
COPB1-201ENST00000249923 COL15A1P39059 1388 aa12.2□□□□□ -0.46
COPB1-201ENST00000249923 MEGF6O75095 1541 aa12.2□□□□□ -0.46
COPB1-201ENST00000249923 CASTP20810 708 aaKnown RBP12.2□□□□□ -0.46
COPB1-201ENST00000249923 NPHP4O75161 1426 aaPredicted RBP12.2□□□□□ -0.46
COPB1-201ENST00000249923 GLRX3O76003 335 aaKnown RBP12.19□□□□□ -0.46
COPB1-201ENST00000249923 NECTIN1Q15223 517 aa12.19□□□□□ -0.46
COPB1-201ENST00000249923 AMOTQ4VCS5 1084 aa12.19□□□□□ -0.46
COPB1-201ENST00000249923 ECHDC1Q9NTX5 307 aa12.19□□□□□ -0.46
COPB1-201ENST00000249923 COL18A1P39060 1754 aa12.19□□□□□ -0.46
COPB1-201ENST00000249923 ADAMTSL3P82987 1691 aa12.19□□□□□ -0.46
COPB1-201ENST00000249923 RRP9O43818 475 aaKnown RBP12.19□□□□□ -0.46
COPB1-201ENST00000249923 ALDH1L1O75891 902 aa12.19□□□□□ -0.46
COPB1-201ENST00000249923 PIP4K2AP48426 406 aaPredicted RBP12.19□□□□□ -0.46
COPB1-201ENST00000249923 AIMP1Q12904 312 aaKnown RBP12.19□□□□□ -0.46
COPB1-201ENST00000249923 DDX17Q92841 729 aaKnown RBP12.19□□□□□ -0.46
COPB1-201ENST00000249923 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.19□□□□□ -0.46
COPB1-201ENST00000249923 GRM8O00222 908 aa12.19□□□□□ -0.46
COPB1-201ENST00000249923 PRPF40BQ6NWY9 871 aaKnown RBP12.19□□□□□ -0.46
COPB1-201ENST00000249923 C9orf78Q9NZ63 289 aaPredicted RBP12.19□□□□□ -0.46
COPB1-201ENST00000249923 TAOK2Q9UL54 1235 aa12.19□□□□□ -0.46
COPB1-201ENST00000249923 AACSQ86V21 672 aa12.18□□□□□ -0.46
COPB1-201ENST00000249923 TMEM87AQ8NBN3 555 aa12.18□□□□□ -0.46
COPB1-201ENST00000249923 A0A0D9SFI3 127 aa12.18□□□□□ -0.46
COPB1-201ENST00000249923 FAM177BA6PVY3 158 aa12.18□□□□□ -0.46
COPB1-201ENST00000249923 C1orf141Q5JVX7 400 aa12.18□□□□□ -0.46
COPB1-201ENST00000249923 CCDC8Q9H0W5 538 aaPredicted RBP12.18□□□□□ -0.46
COPB1-201ENST00000249923 NOL7Q9UMY1 257 aaKnown RBP12.18□□□□□ -0.46
COPB1-201ENST00000249923 MBD3O95983 291 aa12.17□□□□□ -0.46
COPB1-201ENST00000249923 LINS1Q8NG48 757 aa12.17□□□□□ -0.46
COPB1-201ENST00000249923 JARID2Q92833 1246 aaPredicted RBP12.17□□□□□ -0.46
COPB1-201ENST00000249923 EDC3Q96F86 508 aaKnown RBP12.17□□□□□ -0.46
COPB1-201ENST00000249923 ZHX1Q9UKY1 873 aaPredicted RBP12.17□□□□□ -0.46
COPB1-201ENST00000249923 LIMCH1Q9UPQ0 1083 aa12.17□□□□□ -0.46
COPB1-201ENST00000249923 ZSCAN22P10073 491 aaPredicted RBP12.17□□□□□ -0.46
COPB1-201ENST00000249923 OS9Q13438 667 aaPredicted RBP12.17□□□□□ -0.46
COPB1-201ENST00000249923 ME3Q16798 604 aa12.17□□□□□ -0.46
COPB1-201ENST00000249923 LMOD2Q6P5Q4 547 aa12.17□□□□□ -0.46
COPB1-201ENST00000249923 CLASRPQ8N2M8 674 aaKnown RBP12.17□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms