RNA–Protein interactions for RNA: ENST00000225964.9

COL1A1-201, Transcript of collagen type I alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL1A1, Length 6,727 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL1A1-201ENST00000225964 INCENPQ9NQS7 918 aa15.31■□□□□ 0.04
COL1A1-201ENST00000225964 TOP1P11387 765 aaKnown RBP15.31■□□□□ 0.04
COL1A1-201ENST00000225964 PDE4BQ07343 736 aa15.31■□□□□ 0.04
COL1A1-201ENST00000225964 TMEM67Q5HYA8 995 aa15.31■□□□□ 0.04
COL1A1-201ENST00000225964 CPLX3Q8WVH0 158 aa15.31■□□□□ 0.04
COL1A1-201ENST00000225964 CWC25Q9NXE8 425 aaPredicted RBP15.31■□□□□ 0.04
COL1A1-201ENST00000225964 GOLIM4O00461 696 aa15.31■□□□□ 0.04
COL1A1-201ENST00000225964 MTIF2P46199 727 aaKnown RBP15.31■□□□□ 0.04
COL1A1-201ENST00000225964 CRACR2AQ9BSW2 395 aa15.31■□□□□ 0.04
COL1A1-201ENST00000225964 CCDC40Q4G0X9 1142 aa15.3■□□□□ 0.04
COL1A1-201ENST00000225964 BRPF3Q9ULD4 1205 aa15.3■□□□□ 0.04
COL1A1-201ENST00000225964 CETN1Q12798 172 aa15.3■□□□□ 0.04
COL1A1-201ENST00000225964 PDIA4P13667 645 aaKnown RBP15.3■□□□□ 0.04
COL1A1-201ENST00000225964 LDHCP07864 332 aa15.3■□□□□ 0.04
COL1A1-201ENST00000225964 KIF5BP33176 963 aa15.3■□□□□ 0.04
COL1A1-201ENST00000225964 GRIPAP1Q4V328 841 aa15.3■□□□□ 0.04
COL1A1-201ENST00000225964 LARP6Q9BRS8 491 aaKnown RBP15.3■□□□□ 0.04
COL1A1-201ENST00000225964 ATP5J2-PTCD1G3V325 749 aa15.3■□□□□ 0.04
COL1A1-201ENST00000225964 ZNF354CQ86Y25 554 aa15.29■□□□□ 0.04
COL1A1-201ENST00000225964 C16orf71Q8IYS4 520 aaPredicted RBP15.29■□□□□ 0.04
COL1A1-201ENST00000225964 NF2P35240 595 aa15.29■□□□□ 0.04
COL1A1-201ENST00000225964 CKAP2LQ8IYA6 745 aa15.29■□□□□ 0.04
COL1A1-201ENST00000225964 GCOM1H8Y6P7 765 aaPredicted RBP15.29■□□□□ 0.04
COL1A1-201ENST00000225964 ZSCAN12O43309 604 aa15.29■□□□□ 0.04
COL1A1-201ENST00000225964 MYZAPP0CAP1 466 aa15.29■□□□□ 0.04
COL1A1-201ENST00000225964 LMAN1P49257 510 aa15.29■□□□□ 0.04
COL1A1-201ENST00000225964 AMPD3Q01432 767 aa15.29■□□□□ 0.04
COL1A1-201ENST00000225964 STXBP4Q6ZWJ1 553 aa15.29■□□□□ 0.04
COL1A1-201ENST00000225964 USO1O60763 962 aaKnown RBP15.29■□□□□ 0.04
COL1A1-201ENST00000225964 ACSBG1Q96GR2 724 aa15.29■□□□□ 0.04
COL1A1-201ENST00000225964 F8W031 263 aaPredicted RBP15.28■□□□□ 0.04
COL1A1-201ENST00000225964 LDHAL6AQ6ZMR3 332 aa15.28■□□□□ 0.04
COL1A1-201ENST00000225964 ECM2O94769 699 aaPredicted RBP15.28■□□□□ 0.04
COL1A1-201ENST00000225964 NBPF6Q5VWK0 638 aa15.28■□□□□ 0.04
COL1A1-201ENST00000225964 NBPF5PQ86XG9 351 aaPredicted RBP15.28■□□□□ 0.04
COL1A1-201ENST00000225964 NBPF4Q96M43 638 aa15.28■□□□□ 0.04
COL1A1-201ENST00000225964 TCP11L1Q9NUJ3 509 aa15.28■□□□□ 0.04
COL1A1-201ENST00000225964 GSTO1P78417 241 aa15.28■□□□□ 0.04
COL1A1-201ENST00000225964 SLFN5Q08AF3 891 aa15.28■□□□□ 0.04
COL1A1-201ENST00000225964 RAB11FIP4Q86YS3 637 aa15.28■□□□□ 0.04
COL1A1-201ENST00000225964 TTC21AQ8NDW8 1320 aa15.28■□□□□ 0.04
COL1A1-201ENST00000225964 CD109Q6YHK3 1445 aa15.28■□□□□ 0.04
COL1A1-201ENST00000225964 CDK13Q14004 1512 aaKnown RBP15.28■□□□□ 0.04
COL1A1-201ENST00000225964 TMCO5BA8MYB1 307 aa15.28■□□□□ 0.04
COL1A1-201ENST00000225964 SFPQP23246 707 aaKnown RBP eCLIP15.28■□□□□ 0.04
COL1A1-201ENST00000225964 JARID2Q92833 1246 aaPredicted RBP15.28■□□□□ 0.04
COL1A1-201ENST00000225964 SNRKQ9NRH2 765 aa15.28■□□□□ 0.04
COL1A1-201ENST00000225964 DBF4Q9UBU7 674 aaPredicted RBP15.28■□□□□ 0.04
COL1A1-201ENST00000225964 EMILIN1Q9Y6C2 1016 aa15.28■□□□□ 0.04
COL1A1-201ENST00000225964 KIF4BQ2VIQ3 1234 aa15.28■□□□□ 0.04
COL1A1-201ENST00000225964 TEX13AQ9BXU3 409 aaPredicted RBP15.28■□□□□ 0.04
COL1A1-201ENST00000225964 ERICH4A6NGS2 130 aa15.27■□□□□ 0.04
COL1A1-201ENST00000225964 YEATS4O95619 227 aa15.27■□□□□ 0.04
COL1A1-201ENST00000225964 CEBPAP49715 358 aaPredicted RBP15.27■□□□□ 0.04
COL1A1-201ENST00000225964 MFSD6Q6ZSS7 791 aa15.27■□□□□ 0.04
COL1A1-201ENST00000225964 UBXN4Q92575 508 aa15.27■□□□□ 0.04
COL1A1-201ENST00000225964 SH2B1Q9NRF2 756 aaPredicted RBP15.27■□□□□ 0.04
COL1A1-201ENST00000225964 HAND2P61296 217 aa15.27■□□□□ 0.04
COL1A1-201ENST00000225964 PRPF4BQ13523 1007 aaKnown RBP15.27■□□□□ 0.04
COL1A1-201ENST00000225964 KIF14Q15058 1648 aa15.27■□□□□ 0.04
COL1A1-201ENST00000225964 MRPS9P82933 396 aaKnown RBP15.27■□□□□ 0.03
COL1A1-201ENST00000225964 ARHGEF11O15085 1522 aa15.27■□□□□ 0.03
COL1A1-201ENST00000225964 IDEP14735 1019 aa15.27■□□□□ 0.03
COL1A1-201ENST00000225964 CCDC183Q5T5S1 534 aa15.27■□□□□ 0.03
COL1A1-201ENST00000225964 MAP3K9P80192 1104 aa15.27■□□□□ 0.03
COL1A1-201ENST00000225964 IFNL2Q8IZJ0 200 aa15.26■□□□□ 0.03
COL1A1-201ENST00000225964 HDAC9Q9UKV0 1011 aa15.26■□□□□ 0.03
COL1A1-201ENST00000225964 MAP9Q49MG5 647 aa15.26■□□□□ 0.03
COL1A1-201ENST00000225964 TMCO3Q6UWJ1 677 aa15.26■□□□□ 0.03
COL1A1-201ENST00000225964 CRNKL1Q9BZJ0 848 aaKnown RBP15.26■□□□□ 0.03
COL1A1-201ENST00000225964 GBP3Q9H0R5 595 aa15.26■□□□□ 0.03
COL1A1-201ENST00000225964 ALDH1L2Q3SY69 923 aa15.26■□□□□ 0.03
COL1A1-201ENST00000225964 BACH2Q9BYV9 841 aa15.26■□□□□ 0.03
COL1A1-201ENST00000225964 CCDC141Q6ZP82 1450 aa15.26■□□□□ 0.03
COL1A1-201ENST00000225964 EVI5LQ96CN4 794 aa15.26■□□□□ 0.03
COL1A1-201ENST00000225964 SLC26A6Q9BXS9 759 aa15.26■□□□□ 0.03
COL1A1-201ENST00000225964 CC2D2AQ9P2K1 1620 aa15.26■□□□□ 0.03
COL1A1-201ENST00000225964 CCDC152Q4G0S7 254 aa15.26■□□□□ 0.03
COL1A1-201ENST00000225964 FSIP1Q8NA03 581 aa15.25■□□□□ 0.03
COL1A1-201ENST00000225964 SSX2IPQ9Y2D8 614 aa15.25■□□□□ 0.03
COL1A1-201ENST00000225964 POLA1P09884 1462 aaPredicted RBP15.25■□□□□ 0.03
COL1A1-201ENST00000225964 TSPY3P0CV98 308 aa15.25■□□□□ 0.03
COL1A1-201ENST00000225964 TSPY8P0CW00 308 aa15.25■□□□□ 0.03
COL1A1-201ENST00000225964 CIZ1Q9ULV3 898 aaPredicted RBP15.25■□□□□ 0.03
COL1A1-201ENST00000225964 ARAP1Q96P48 1450 aa15.25■□□□□ 0.03
COL1A1-201ENST00000225964 PTPN14Q15678 1187 aa15.25■□□□□ 0.03
COL1A1-201ENST00000225964 METAP2P50579 478 aaKnown RBP eCLIP15.25■□□□□ 0.03
COL1A1-201ENST00000225964 PICALMQ13492 652 aa15.25■□□□□ 0.03
COL1A1-201ENST00000225964 CHRNA2Q15822 529 aa15.25■□□□□ 0.03
COL1A1-201ENST00000225964 GIGYF2Q6Y7W6 1299 aaKnown RBP15.25■□□□□ 0.03
COL1A1-201ENST00000225964 SHTN1A0MZ66 631 aa15.25■□□□□ 0.03
COL1A1-201ENST00000225964 NOP2P46087 812 aaKnown RBP15.25■□□□□ 0.03
COL1A1-201ENST00000225964 CEP63Q96MT8 703 aa15.25■□□□□ 0.03
COL1A1-201ENST00000225964 TSNARE1Q96NA8 513 aa15.25■□□□□ 0.03
COL1A1-201ENST00000225964 FERMT1Q9BQL6 677 aa15.25■□□□□ 0.03
COL1A1-201ENST00000225964 CLIP2Q9UDT6 1046 aa15.25■□□□□ 0.03
COL1A1-201ENST00000225964 DMRT2Q9Y5R5 561 aa15.25■□□□□ 0.03
COL1A1-201ENST00000225964 PAFAH1B1P43034 410 aa15.25■□□□□ 0.03
COL1A1-201ENST00000225964 PLS1Q14651 629 aa15.25■□□□□ 0.03
COL1A1-201ENST00000225964 CCDC174Q6PII3 467 aa15.25■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 65.5 ms