RNA–Protein interactions for RNA: ENST00000225726.9

CCDC47-201, Transcript of coiled-coil domain containing 47, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC47, Length 3,466 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC47-201ENST00000225726 NGLY1Q96IV0 654 aa18.46■□□□□ 0.55
CCDC47-201ENST00000225726 C8orf37Q96NL8 207 aa18.46■□□□□ 0.55
CCDC47-201ENST00000225726 MTX1Q13505 466 aa18.46■□□□□ 0.55
CCDC47-201ENST00000225726 VPS72Q15906 364 aa18.46■□□□□ 0.55
CCDC47-201ENST00000225726 SMARCA5O60264 1052 aaPredicted RBP18.46■□□□□ 0.54
CCDC47-201ENST00000225726 A1BGP04217 495 aa18.46■□□□□ 0.54
CCDC47-201ENST00000225726 DEKP35659 375 aaKnown RBP18.46■□□□□ 0.54
CCDC47-201ENST00000225726 IPO9Q96P70 1041 aaKnown RBP18.46■□□□□ 0.54
CCDC47-201ENST00000225726 EXOC6BQ9Y2D4 811 aa18.46■□□□□ 0.54
CCDC47-201ENST00000225726 APBB1O00213 710 aa18.45■□□□□ 0.54
CCDC47-201ENST00000225726 FNBP4Q8N3X1 1017 aaPredicted RBP18.44■□□□□ 0.54
CCDC47-201ENST00000225726 LRRCC1Q9C099 1032 aa18.44■□□□□ 0.54
CCDC47-201ENST00000225726 SEC24BO95487 1268 aa18.44■□□□□ 0.54
CCDC47-201ENST00000225726 SRGAP3O43295 1099 aa18.44■□□□□ 0.54
CCDC47-201ENST00000225726 GCKRQ14397 625 aa18.44■□□□□ 0.54
CCDC47-201ENST00000225726 RAB11FIP3O75154 756 aa18.43■□□□□ 0.54
CCDC47-201ENST00000225726 C16orf71Q8IYS4 520 aaPredicted RBP18.43■□□□□ 0.54
CCDC47-201ENST00000225726 MARCH10Q8NA82 808 aaPredicted RBP18.43■□□□□ 0.54
CCDC47-201ENST00000225726 RBM42Q9BTD8 480 aaKnown RBP18.43■□□□□ 0.54
CCDC47-201ENST00000225726 PRIM1P49642 420 aaKnown RBP18.43■□□□□ 0.54
CCDC47-201ENST00000225726 DNAJC10Q8IXB1 793 aa18.43■□□□□ 0.54
CCDC47-201ENST00000225726 STARD3NLO95772 234 aa18.42■□□□□ 0.54
CCDC47-201ENST00000225726 SYTL4Q96C24 671 aaPredicted RBP18.42■□□□□ 0.54
CCDC47-201ENST00000225726 SUCLG2Q96I99 432 aa18.42■□□□□ 0.54
CCDC47-201ENST00000225726 TJP1Q07157 1748 aa18.42■□□□□ 0.54
CCDC47-201ENST00000225726 MSH5O43196 834 aa18.42■□□□□ 0.54
CCDC47-201ENST00000225726 TTC22Q5TAA0 569 aa18.42■□□□□ 0.54
CCDC47-201ENST00000225726 UPF2Q9HAU5 1272 aaKnown RBP18.42■□□□□ 0.54
CCDC47-201ENST00000225726 TTLL7Q6ZT98 887 aa18.41■□□□□ 0.54
CCDC47-201ENST00000225726 OTUD7AQ8TE49 926 aaPredicted RBP18.41■□□□□ 0.54
CCDC47-201ENST00000225726 DDRGK1Q96HY6 314 aa18.41■□□□□ 0.54
CCDC47-201ENST00000225726 HSP90AB4PQ58FF6 505 aa18.4■□□□□ 0.54
CCDC47-201ENST00000225726 COL15A1P39059 1388 aa18.4■□□□□ 0.54
CCDC47-201ENST00000225726 SURF6O75683 361 aaKnown RBP18.4■□□□□ 0.54
CCDC47-201ENST00000225726 OSBPL3Q9H4L5 887 aa18.4■□□□□ 0.54
CCDC47-201ENST00000225726 GSPT1P15170 499 aaKnown RBP18.39■□□□□ 0.53
CCDC47-201ENST00000225726 KAZALD1Q96I82 304 aa18.39■□□□□ 0.53
CCDC47-201ENST00000225726 FAM98CQ17RN3 349 aaKnown RBP18.39■□□□□ 0.53
CCDC47-201ENST00000225726 BICC1Q9H694 974 aaKnown RBP18.39■□□□□ 0.53
CCDC47-201ENST00000225726 NOP58Q9Y2X3 529 aaKnown RBP18.39■□□□□ 0.53
CCDC47-201ENST00000225726 SALL3Q9BXA9 1300 aa18.38■□□□□ 0.53
CCDC47-201ENST00000225726 KAT6BQ8WYB5 2073 aa18.38■□□□□ 0.53
CCDC47-201ENST00000225726 SLC4A9Q96Q91 983 aa18.38■□□□□ 0.53
CCDC47-201ENST00000225726 USP21Q9UK80 565 aa18.38■□□□□ 0.53
CCDC47-201ENST00000225726 CICQ96RK0 1608 aaPredicted RBP18.38■□□□□ 0.53
CCDC47-201ENST00000225726 CYP19A1P11511 503 aaPredicted RBP18.37■□□□□ 0.53
CCDC47-201ENST00000225726 THSD7AQ9UPZ6 1657 aa18.37■□□□□ 0.53
CCDC47-201ENST00000225726 HSPA1LP34931 641 aa18.37■□□□□ 0.53
CCDC47-201ENST00000225726 KIF1BPQ96EK5 621 aa18.37■□□□□ 0.53
CCDC47-201ENST00000225726 ATP5J2-PTCD1G3V325 749 aa18.37■□□□□ 0.53
CCDC47-201ENST00000225726 PDE1AP54750 535 aa18.37■□□□□ 0.53
CCDC47-201ENST00000225726 ACSBG1Q96GR2 724 aa18.37■□□□□ 0.53
CCDC47-201ENST00000225726 RHPN1Q8TCX5 695 aa18.36■□□□□ 0.53
CCDC47-201ENST00000225726 CDC45O75419 566 aa18.36■□□□□ 0.53
CCDC47-201ENST00000225726 TBC1D32Q96NH3 1257 aa18.36■□□□□ 0.53
CCDC47-201ENST00000225726 ZBTB3Q9H5J0 574 aa18.36■□□□□ 0.53
CCDC47-201ENST00000225726 KIF6Q6ZMV9 814 aa18.35■□□□□ 0.53
CCDC47-201ENST00000225726 CWC25Q9NXE8 425 aaPredicted RBP18.35■□□□□ 0.53
CCDC47-201ENST00000225726 A0A087WZG4 1122 aa18.35■□□□□ 0.53
CCDC47-201ENST00000225726 MEX3CQ5U5Q3 659 aaKnown RBP18.35■□□□□ 0.53
CCDC47-201ENST00000225726 MX1P20591 662 aa18.35■□□□□ 0.53
CCDC47-201ENST00000225726 CASP7P55210 303 aa18.35■□□□□ 0.53
CCDC47-201ENST00000225726 STAP2Q9UGK3 403 aa18.35■□□□□ 0.53
CCDC47-201ENST00000225726 AOX1Q06278 1338 aa18.35■□□□□ 0.53
CCDC47-201ENST00000225726 TUBGCP6Q96RT7 1819 aa18.34■□□□□ 0.53
CCDC47-201ENST00000225726 ERC1Q8IUD2 1116 aa18.34■□□□□ 0.53
CCDC47-201ENST00000225726 CCDC191Q8NCU4 936 aa18.34■□□□□ 0.53
CCDC47-201ENST00000225726 MFAP1P55081 439 aaKnown RBP18.34■□□□□ 0.53
CCDC47-201ENST00000225726 TBC1D9Q6ZT07 1266 aa18.34■□□□□ 0.53
CCDC47-201ENST00000225726 UBE3BQ7Z3V4 1068 aa18.34■□□□□ 0.53
CCDC47-201ENST00000225726 H7C1W4 665 aa18.33■□□□□ 0.53
CCDC47-201ENST00000225726 OS9Q13438 667 aaPredicted RBP18.33■□□□□ 0.52
CCDC47-201ENST00000225726 RREB1Q92766 1687 aa18.33■□□□□ 0.52
CCDC47-201ENST00000225726 A0A0G2JS52 829 aa18.33■□□□□ 0.52
CCDC47-201ENST00000225726 RABL6Q3YEC7 729 aaPredicted RBP18.32■□□□□ 0.52
CCDC47-201ENST00000225726 EPHA10Q5JZY3 1008 aa18.32■□□□□ 0.52
CCDC47-201ENST00000225726 SMARCC1Q92922 1105 aaPredicted RBP18.32■□□□□ 0.52
CCDC47-201ENST00000225726 ISCA1Q9BUE6 129 aa18.32■□□□□ 0.52
CCDC47-201ENST00000225726 IL1RAPL2Q9NP60 686 aa18.32■□□□□ 0.52
CCDC47-201ENST00000225726 ZNF330Q9Y3S2 320 aaPredicted RBP18.32■□□□□ 0.52
CCDC47-201ENST00000225726 TCIRG1Q13488 830 aa18.32■□□□□ 0.52
CCDC47-201ENST00000225726 ZNF831Q5JPB2 1677 aa18.32■□□□□ 0.52
CCDC47-201ENST00000225726 MAP3K15Q6ZN16 1313 aa18.32■□□□□ 0.52
CCDC47-201ENST00000225726 SDSP20132 328 aa18.32■□□□□ 0.52
CCDC47-201ENST00000225726 PA2G4Q9UQ80 394 aaKnown RBP18.31■□□□□ 0.52
CCDC47-201ENST00000225726 ZBTB1Q9Y2K1 713 aa18.31■□□□□ 0.52
CCDC47-201ENST00000225726 PALLDQ8WX93 1383 aa18.31■□□□□ 0.52
CCDC47-201ENST00000225726 TRIM28Q13263 835 aaKnown RBP18.31■□□□□ 0.52
CCDC47-201ENST00000225726 JARID2Q92833 1246 aaPredicted RBP18.31■□□□□ 0.52
CCDC47-201ENST00000225726 ANKRD36CQ5JPF3 1778 aa18.3■□□□□ 0.52
CCDC47-201ENST00000225726 IL6STP40189 918 aaPredicted RBP18.3■□□□□ 0.52
CCDC47-201ENST00000225726 C22orf23Q9BZE7 217 aa18.3■□□□□ 0.52
CCDC47-201ENST00000225726 LOC102724428A0A0B4J2F2 783 aa18.3■□□□□ 0.52
CCDC47-201ENST00000225726 SIK1P57059 783 aa18.3■□□□□ 0.52
CCDC47-201ENST00000225726 AFF2P51816 1311 aa18.3■□□□□ 0.52
CCDC47-201ENST00000225726 G3BP1Q13283 466 aaKnown RBP eCLIP18.29■□□□□ 0.52
CCDC47-201ENST00000225726 ATP6V1AP38606 617 aa18.29■□□□□ 0.52
CCDC47-201ENST00000225726 ATRNO75882 1429 aa18.29■□□□□ 0.52
CCDC47-201ENST00000225726 GIGYF2Q6Y7W6 1299 aaKnown RBP18.29■□□□□ 0.52
CCDC47-201ENST00000225726 CASC1Q6TDU7 716 aa18.28■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms