RNA–Protein interactions for RNA: ENST00000600888.2

CKS1BP3-201, Transcript of CDC28 protein kinase regulatory subunit 1B pseudogene 3, humanhuman

BASIC

Gene CKS1BP3, Length 237 nt, Biotype processed pseudogene, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1BP3-201ENST00000600888 OR2A12Q8NGT7 310 aa3.38□□□□□ -1.87
CKS1BP3-201ENST00000600888 OR52I2Q8NH67 350 aa3.38□□□□□ -1.87
CKS1BP3-201ENST00000600888 JOSD2Q8TAC2 188 aa3.38□□□□□ -1.87
CKS1BP3-201ENST00000600888 GSDMBQ8TAX9 411 aa3.38□□□□□ -1.87
CKS1BP3-201ENST00000600888 RXFP2Q8WXD0 754 aa3.38□□□□□ -1.87
CKS1BP3-201ENST00000600888 OR8D1Q8WZ84 308 aa3.38□□□□□ -1.87
CKS1BP3-201ENST00000600888 SYN2Q92777 582 aaPredicted RBP3.38□□□□□ -1.87
CKS1BP3-201ENST00000600888 ISG20Q96AZ6 181 aaKnown RBP3.38□□□□□ -1.87
CKS1BP3-201ENST00000600888 PHF21AQ96BD5 680 aa3.38□□□□□ -1.87
CKS1BP3-201ENST00000600888 BIRC7Q96CA5 298 aa3.38□□□□□ -1.87
CKS1BP3-201ENST00000600888 CCDC114Q96M63 670 aa3.38□□□□□ -1.87
CKS1BP3-201ENST00000600888 CFAP57Q96MR6 1250 aa3.38□□□□□ -1.87
CKS1BP3-201ENST00000600888 PCDHB18PQ96TA0 734 aa3.38□□□□□ -1.87
CKS1BP3-201ENST00000600888 PSMB7Q99436 277 aa3.38□□□□□ -1.87
CKS1BP3-201ENST00000600888 AGPAT1Q99943 283 aa3.38□□□□□ -1.87
CKS1BP3-201ENST00000600888 TREX2Q9BQ50 279 aaPredicted RBP3.38□□□□□ -1.87
CKS1BP3-201ENST00000600888 SRSF8Q9BRL6 282 aaKnown RBP3.38□□□□□ -1.87
CKS1BP3-201ENST00000600888 C11orf70Q9BRQ4 267 aa3.38□□□□□ -1.87
CKS1BP3-201ENST00000600888 ZYG11BQ9C0D3 744 aa3.38□□□□□ -1.87
CKS1BP3-201ENST00000600888 RAB6CQ9H0N0 254 aa3.38□□□□□ -1.87
CKS1BP3-201ENST00000600888 ERVMER34-1Q9H9K5 563 aa3.38□□□□□ -1.87
CKS1BP3-201ENST00000600888 TM9SF3Q9HD45 589 aa3.38□□□□□ -1.87
CKS1BP3-201ENST00000600888 ADAM22Q9P0K1 906 aa3.38□□□□□ -1.87
CKS1BP3-201ENST00000600888 COX16Q9P0S2 106 aa3.38□□□□□ -1.87
CKS1BP3-201ENST00000600888 MARCH4Q9P2E8 410 aaPredicted RBP3.38□□□□□ -1.87
CKS1BP3-201ENST00000600888 OR12D3Q9UGF7 316 aa3.38□□□□□ -1.87
CKS1BP3-201ENST00000600888 VPS28Q9UK41 221 aa3.38□□□□□ -1.87
CKS1BP3-201ENST00000600888 NENFQ9UMX5 172 aa3.38□□□□□ -1.87
CKS1BP3-201ENST00000600888 NEU3Q9UQ49 428 aa3.38□□□□□ -1.87
CKS1BP3-201ENST00000600888 URB1O60287 2271 aaKnown RBP3.37□□□□□ -1.87
CKS1BP3-201ENST00000600888 COL27A1Q8IZC6 1860 aaPredicted RBP3.37□□□□□ -1.87
CKS1BP3-201ENST00000600888 A0A0D9SEW6 157 aa3.37□□□□□ -1.87
CKS1BP3-201ENST00000600888 A0A1B0GTQ1 180 aa3.37□□□□□ -1.87
CKS1BP3-201ENST00000600888 TMEM8BA6NDV4 472 aa3.37□□□□□ -1.87
CKS1BP3-201ENST00000600888 C5orf60A6NFR6 353 aa3.37□□□□□ -1.87
CKS1BP3-201ENST00000600888 CDRT15L2A8MXV6 281 aa3.37□□□□□ -1.87
CKS1BP3-201ENST00000600888 ANKRD66B4E2M5 251 aa3.37□□□□□ -1.87
CKS1BP3-201ENST00000600888 FAM72CH0Y354 149 aa3.37□□□□□ -1.87
CKS1BP3-201ENST00000600888 PRAMEF26H0Y7S4 382 aa3.37□□□□□ -1.87
CKS1BP3-201ENST00000600888 TMEM178BH3BS89 294 aa3.37□□□□□ -1.87
CKS1BP3-201ENST00000600888 J3QR06 171 aa3.37□□□□□ -1.87
CKS1BP3-201ENST00000600888 YKT6O15498 198 aa3.37□□□□□ -1.87
CKS1BP3-201ENST00000600888 KDELR3O43731 214 aa3.37□□□□□ -1.87
CKS1BP3-201ENST00000600888 SYNGR3O43761 229 aa3.37□□□□□ -1.87
CKS1BP3-201ENST00000600888 SNAP91O60641 907 aa3.37□□□□□ -1.87
CKS1BP3-201ENST00000600888 MAGEC1O60732 1142 aa3.37□□□□□ -1.87
CKS1BP3-201ENST00000600888 RTN2O75298 545 aa3.37□□□□□ -1.87
CKS1BP3-201ENST00000600888 ZNF821O75541 412 aaPredicted RBP3.37□□□□□ -1.87
CKS1BP3-201ENST00000600888 WISP2O76076 250 aa3.37□□□□□ -1.87
CKS1BP3-201ENST00000600888 TPPPO94811 219 aa3.37□□□□□ -1.87
CKS1BP3-201ENST00000600888 CD160O95971 181 aa3.37□□□□□ -1.87
CKS1BP3-201ENST00000600888 IL1BP01584 269 aa3.37□□□□□ -1.87
CKS1BP3-201ENST00000600888 CTSLP07711 333 aa3.37□□□□□ -1.87
CKS1BP3-201ENST00000600888 PLEKP08567 350 aaPredicted RBP3.37□□□□□ -1.87
CKS1BP3-201ENST00000600888 SELLP14151 372 aa3.37□□□□□ -1.87
CKS1BP3-201ENST00000600888 DESP17661 470 aa3.37□□□□□ -1.87
CKS1BP3-201ENST00000600888 MT3P25713 68 aa3.37□□□□□ -1.87
CKS1BP3-201ENST00000600888 CHRNA3P32297 505 aa3.37□□□□□ -1.87
CKS1BP3-201ENST00000600888 AHRP35869 848 aa3.37□□□□□ -1.87
CKS1BP3-201ENST00000600888 HCAR3P49019 387 aa3.37□□□□□ -1.87
CKS1BP3-201ENST00000600888 HOXA1P49639 335 aaPredicted RBP3.37□□□□□ -1.87
CKS1BP3-201ENST00000600888 CSNK1EP49674 416 aaKnown RBP3.37□□□□□ -1.87
CKS1BP3-201ENST00000600888 SUOXP51687 545 aa3.37□□□□□ -1.87
CKS1BP3-201ENST00000600888 PHEXP78562 749 aa3.37□□□□□ -1.87
CKS1BP3-201ENST00000600888 ARF5P84085 180 aa3.37□□□□□ -1.87
CKS1BP3-201ENST00000600888 AIMP2Q13155 320 aaKnown RBP3.37□□□□□ -1.87
CKS1BP3-201ENST00000600888 C15orf59Q2T9L4 293 aaPredicted RBP3.37□□□□□ -1.87
CKS1BP3-201ENST00000600888 HLA-BQ31612 363 aa3.37□□□□□ -1.87
CKS1BP3-201ENST00000600888 KRTAP24-1Q3LI83 254 aa3.37□□□□□ -1.87
CKS1BP3-201ENST00000600888 CARD16Q5EG05 197 aa3.37□□□□□ -1.87
CKS1BP3-201ENST00000600888 SIRPB2Q5JXA9 342 aa3.37□□□□□ -1.87
CKS1BP3-201ENST00000600888 PIP5KL1Q5T9C9 394 aa3.37□□□□□ -1.87
CKS1BP3-201ENST00000600888 FAM72AQ5TYM5 149 aa3.37□□□□□ -1.87
CKS1BP3-201ENST00000600888 SFMBT2Q5VUG0 894 aa3.37□□□□□ -1.87
CKS1BP3-201ENST00000600888 FAM72DQ6L9T8 149 aa3.37□□□□□ -1.87
CKS1BP3-201ENST00000600888 CAVIN1Q6NZI2 390 aaKnown RBP3.37□□□□□ -1.87
CKS1BP3-201ENST00000600888 C22orf39Q6P5X5 142 aa3.37□□□□□ -1.87
CKS1BP3-201ENST00000600888 SLFN11Q7Z7L1 901 aa3.37□□□□□ -1.87
CKS1BP3-201ENST00000600888 PRPF39Q86UA1 669 aaKnown RBP3.37□□□□□ -1.87
CKS1BP3-201ENST00000600888 ZNF329Q86UD4 541 aa3.37□□□□□ -1.87
CKS1BP3-201ENST00000600888 FAM72BQ86X60 149 aa3.37□□□□□ -1.87
CKS1BP3-201ENST00000600888 CACUL1Q86Y37 369 aa3.37□□□□□ -1.87
CKS1BP3-201ENST00000600888 NAXDQ8IW45 347 aa3.37□□□□□ -1.87
CKS1BP3-201ENST00000600888 UMODL1-AS1Q8N2C9 162 aa3.37□□□□□ -1.87
CKS1BP3-201ENST00000600888 RTL3Q8N8U3 475 aaKnown RBP3.37□□□□□ -1.87
CKS1BP3-201ENST00000600888 DEFB124Q8NES8 71 aa3.37□□□□□ -1.87
CKS1BP3-201ENST00000600888 SLC24A4Q8NFF2 622 aa3.37□□□□□ -1.87
CKS1BP3-201ENST00000600888 HCAR2Q8TDS4 363 aa3.37□□□□□ -1.87
CKS1BP3-201ENST00000600888 LRRC8CQ8TDW0 803 aa3.37□□□□□ -1.87
CKS1BP3-201ENST00000600888 FAM172AQ8WUF8 416 aa3.37□□□□□ -1.87
CKS1BP3-201ENST00000600888 RAB7BQ96AH8 199 aa3.37□□□□□ -1.87
CKS1BP3-201ENST00000600888 MOAP1Q96BY2 351 aa3.37□□□□□ -1.87
CKS1BP3-201ENST00000600888 TBC1D31Q96DN5 1066 aa3.37□□□□□ -1.87
CKS1BP3-201ENST00000600888 ERLEC1Q96DZ1 483 aa3.37□□□□□ -1.87
CKS1BP3-201ENST00000600888 PPP1R16AQ96I34 528 aa3.37□□□□□ -1.87
CKS1BP3-201ENST00000600888 ZNF583Q96ND8 569 aa3.37□□□□□ -1.87
CKS1BP3-201ENST00000600888 NAP1L5Q96NT1 182 aaPredicted RBP3.37□□□□□ -1.87
CKS1BP3-201ENST00000600888 UHRF2Q96PU4 802 aa3.37□□□□□ -1.87
CKS1BP3-201ENST00000600888 OMDQ99983 421 aa3.37□□□□□ -1.87
CKS1BP3-201ENST00000600888 CNPY3Q9BT09 278 aa3.37□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 57.8 ms