RNA–Protein interactions for RNA: ENST00000595945.5

SHKBP1-211, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 823 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-211ENST00000595945 SUCOQ9UBS9 1254 aaKnown RBP13.84□□□□□ -0.19
SHKBP1-211ENST00000595945 MMACHCQ9Y4U1 282 aa13.84□□□□□ -0.19
SHKBP1-211ENST00000595945 CCDC187A0A096LP49 1063 aa13.83□□□□□ -0.2
SHKBP1-211ENST00000595945 A0A1W2PNU3 283 aaPredicted RBP13.83□□□□□ -0.2
SHKBP1-211ENST00000595945 CLDN4O14493 209 aa13.83□□□□□ -0.2
SHKBP1-211ENST00000595945 NVLO15381 856 aaKnown RBP13.83□□□□□ -0.2
SHKBP1-211ENST00000595945 DNAJA2O60884 412 aa13.83□□□□□ -0.2
SHKBP1-211ENST00000595945 B4GALT2O60909 372 aa13.83□□□□□ -0.2
SHKBP1-211ENST00000595945 NTRK1P04629 796 aa13.83□□□□□ -0.2
SHKBP1-211ENST00000595945 ATP1B1P05026 303 aa13.83□□□□□ -0.2
SHKBP1-211ENST00000595945 SLC35E2P0CK97 266 aa13.83□□□□□ -0.2
SHKBP1-211ENST00000595945 RAB15P59190 212 aa13.83□□□□□ -0.2
SHKBP1-211ENST00000595945 ID2Q02363 134 aa13.83□□□□□ -0.2
SHKBP1-211ENST00000595945 NKAIN1Q4KMZ8 207 aa13.83□□□□□ -0.2
SHKBP1-211ENST00000595945 ARHGAP40Q5TG30 622 aa13.83□□□□□ -0.2
SHKBP1-211ENST00000595945 SAXO2Q658L1 398 aa13.83□□□□□ -0.2
SHKBP1-211ENST00000595945 CEACAM20Q6UY09 585 aa13.83□□□□□ -0.2
SHKBP1-211ENST00000595945 RAB11FIP2Q7L804 512 aa13.83□□□□□ -0.2
SHKBP1-211ENST00000595945 NET1Q7Z628 596 aaPredicted RBP13.83□□□□□ -0.2
SHKBP1-211ENST00000595945 CLEC4FQ8N1N0 589 aa13.83□□□□□ -0.2
SHKBP1-211ENST00000595945 C10orf111Q8N326 155 aa13.83□□□□□ -0.2
SHKBP1-211ENST00000595945 OR9A2Q8NGT5 310 aa13.83□□□□□ -0.2
SHKBP1-211ENST00000595945 ZNF675Q8TD23 568 aa13.83□□□□□ -0.2
SHKBP1-211ENST00000595945 NEURL3Q96EH8 262 aa13.83□□□□□ -0.2
SHKBP1-211ENST00000595945 LRFN5Q96NI6 719 aa13.83□□□□□ -0.2
SHKBP1-211ENST00000595945 SLC35A5Q9BS91 424 aa13.83□□□□□ -0.2
SHKBP1-211ENST00000595945 TGIF2Q9GZN2 237 aa13.83□□□□□ -0.2
SHKBP1-211ENST00000595945 CHST8Q9H2A9 424 aa13.83□□□□□ -0.2
SHKBP1-211ENST00000595945 GPATCH2Q9NW75 528 aa13.83□□□□□ -0.2
SHKBP1-211ENST00000595945 NTMQ9P121 344 aa13.83□□□□□ -0.2
SHKBP1-211ENST00000595945 TRPC4Q9UBN4 977 aa13.83□□□□□ -0.2
SHKBP1-211ENST00000595945 POMPQ9Y244 141 aa13.83□□□□□ -0.2
SHKBP1-211ENST00000595945 IGKV3D-11A0A0A0MRZ8 115 aa13.82□□□□□ -0.2
SHKBP1-211ENST00000595945 SPAARA0A1B0GVQ0 90 aa13.82□□□□□ -0.2
SHKBP1-211ENST00000595945 EVPLLA8MZ36 301 aa13.82□□□□□ -0.2
SHKBP1-211ENST00000595945 FAM220BPB1ANY3 271 aa13.82□□□□□ -0.2
SHKBP1-211ENST00000595945 PLOD2O00469 737 aa13.82□□□□□ -0.2
SHKBP1-211ENST00000595945 ACOT8O14734 319 aa13.82□□□□□ -0.2
SHKBP1-211ENST00000595945 CPNE3O75131 537 aaKnown RBP13.82□□□□□ -0.2
SHKBP1-211ENST00000595945 JRKO75564 520 aa13.82□□□□□ -0.2
SHKBP1-211ENST00000595945 CIB2O75838 187 aa13.82□□□□□ -0.2
SHKBP1-211ENST00000595945 BMP10O95393 424 aa13.82□□□□□ -0.2
SHKBP1-211ENST00000595945 ZNF28P17035 718 aa13.82□□□□□ -0.2
SHKBP1-211ENST00000595945 HTR1EP28566 365 aa13.82□□□□□ -0.2
SHKBP1-211ENST00000595945 OR4D2P58180 307 aa13.82□□□□□ -0.2
SHKBP1-211ENST00000595945 BTG2P78543 158 aa13.82□□□□□ -0.2
SHKBP1-211ENST00000595945 ELF3P78545 371 aaPredicted RBP13.82□□□□□ -0.2
SHKBP1-211ENST00000595945 DCDP81605 110 aaKnown RBP13.82□□□□□ -0.2
SHKBP1-211ENST00000595945 MS4A2Q01362 244 aa13.82□□□□□ -0.2
SHKBP1-211ENST00000595945 RHAGQ02094 409 aa13.82□□□□□ -0.2
SHKBP1-211ENST00000595945 ABHD18Q0P651 414 aa13.82□□□□□ -0.2
SHKBP1-211ENST00000595945 MGAT2Q10469 447 aa13.82□□□□□ -0.2
SHKBP1-211ENST00000595945 BNIP2Q12982 314 aa13.82□□□□□ -0.2
SHKBP1-211ENST00000595945 BIKQ13323 160 aa13.82□□□□□ -0.2
SHKBP1-211ENST00000595945 EIF3IQ13347 325 aaKnown RBP13.82□□□□□ -0.2
SHKBP1-211ENST00000595945 TRIM25Q14258 630 aaKnown RBP13.82□□□□□ -0.2
SHKBP1-211ENST00000595945 ERV3-1Q14264 604 aa13.82□□□□□ -0.2
SHKBP1-211ENST00000595945 LTB4RQ15722 352 aa13.82□□□□□ -0.2
SHKBP1-211ENST00000595945 ZNF628Q5EBL2 1059 aa13.82□□□□□ -0.2
SHKBP1-211ENST00000595945 FHL5Q5TD97 284 aa13.82□□□□□ -0.2
SHKBP1-211ENST00000595945 QSOX2Q6ZRP7 698 aa13.82□□□□□ -0.2
SHKBP1-211ENST00000595945 PTRH1Q86Y79 214 aaKnown RBP13.82□□□□□ -0.2
SHKBP1-211ENST00000595945 FAM156AQ8NDB6 213 aa13.82□□□□□ -0.2
SHKBP1-211ENST00000595945 OR52N2Q8NGI0 321 aa13.82□□□□□ -0.2
SHKBP1-211ENST00000595945 OR10A6Q8NH74 314 aa13.82□□□□□ -0.2
SHKBP1-211ENST00000595945 WDR60Q8WVS4 1066 aa13.82□□□□□ -0.2
SHKBP1-211ENST00000595945 MOAP1Q96BY2 351 aa13.82□□□□□ -0.2
SHKBP1-211ENST00000595945 ASB9Q96DX5 294 aa13.82□□□□□ -0.2
SHKBP1-211ENST00000595945 CLIP3Q96DZ5 547 aa13.82□□□□□ -0.2
SHKBP1-211ENST00000595945 ELP4Q96EB1 424 aa13.82□□□□□ -0.2
SHKBP1-211ENST00000595945 FAM120BQ96EK7 910 aaKnown RBP13.82□□□□□ -0.2
SHKBP1-211ENST00000595945 THUMPD3Q9BV44 507 aaKnown RBP13.82□□□□□ -0.2
SHKBP1-211ENST00000595945 ALG2Q9H553 416 aa13.82□□□□□ -0.2
SHKBP1-211ENST00000595945 DENND2DQ9H6A0 471 aaPredicted RBP13.82□□□□□ -0.2
SHKBP1-211ENST00000595945 SEMA3GQ9NS98 782 aa13.82□□□□□ -0.2
SHKBP1-211ENST00000595945 ACSL6Q9UKU0 697 aa13.82□□□□□ -0.2
SHKBP1-211ENST00000595945 USP22Q9UPT9 525 aa13.82□□□□□ -0.2
SHKBP1-211ENST00000595945 CORO2BQ9UQ03 480 aa13.82□□□□□ -0.2
SHKBP1-211ENST00000595945 RNF103-CHMP3A0A140T963 221 aa13.81□□□□□ -0.2
SHKBP1-211ENST00000595945 MYOCOSA0A1B0GUC4 107 aa13.81□□□□□ -0.2
SHKBP1-211ENST00000595945 PMS2P1A4D2B8 440 aa13.81□□□□□ -0.2
SHKBP1-211ENST00000595945 A8MUI8 341 aa13.81□□□□□ -0.2
SHKBP1-211ENST00000595945 SLC30A4O14863 429 aa13.81□□□□□ -0.2
SHKBP1-211ENST00000595945 EMC8O43402 210 aa13.81□□□□□ -0.2
SHKBP1-211ENST00000595945 SLITRK5O94991 958 aa13.81□□□□□ -0.2
SHKBP1-211ENST00000595945 KRT75O95678 551 aa13.81□□□□□ -0.2
SHKBP1-211ENST00000595945 RECKO95980 971 aa13.81□□□□□ -0.2
SHKBP1-211ENST00000595945 BMP2P12643 396 aa13.81□□□□□ -0.2
SHKBP1-211ENST00000595945 ITIH1P19827 911 aa13.81□□□□□ -0.2
SHKBP1-211ENST00000595945 GALNSP34059 522 aa13.81□□□□□ -0.2
SHKBP1-211ENST00000595945 PTGER1P34995 402 aa13.81□□□□□ -0.2
SHKBP1-211ENST00000595945 GPC1P35052 558 aa13.81□□□□□ -0.2
SHKBP1-211ENST00000595945 MSX2P35548 267 aaPredicted RBP13.81□□□□□ -0.2
SHKBP1-211ENST00000595945 SOAT1P35610 550 aa13.81□□□□□ -0.2
SHKBP1-211ENST00000595945 CCT3P49368 545 aaKnown RBP13.81□□□□□ -0.2
SHKBP1-211ENST00000595945 EFNA3P52797 238 aa13.81□□□□□ -0.2
SHKBP1-211ENST00000595945 VAC14Q08AM6 782 aa13.81□□□□□ -0.2
SHKBP1-211ENST00000595945 TRAP1Q12931 704 aaKnown RBP13.81□□□□□ -0.2
SHKBP1-211ENST00000595945 RGNQ15493 299 aa13.81□□□□□ -0.2
SHKBP1-211ENST00000595945 OVCH1Q7RTY7 1134 aa13.81□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms