RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 UCN3Q969E3 161 aa5.09□□□□□ -1.6
SYNE1-220ENST00000471834 SENP5Q96HI0 755 aaPredicted RBP5.09□□□□□ -1.6
SYNE1-220ENST00000471834 IPPKQ9H8X2 491 aa5.09□□□□□ -1.6
SYNE1-220ENST00000471834 ENAMQ9NRM1 1142 aa5.09□□□□□ -1.6
SYNE1-220ENST00000471834 ZNF175Q9Y473 711 aa5.09□□□□□ -1.6
SYNE1-220ENST00000471834 HSFX4A0A1B0GTS1 333 aaPredicted RBP5.08□□□□□ -1.6
SYNE1-220ENST00000471834 HSFX3A0A1B0GWH4 333 aaPredicted RBP5.08□□□□□ -1.6
SYNE1-220ENST00000471834 NT5C1B-RDH14C9J2C7 533 aa5.08□□□□□ -1.6
SYNE1-220ENST00000471834 RAD51BO15315 384 aa5.08□□□□□ -1.6
SYNE1-220ENST00000471834 FFAR2O15552 330 aa5.08□□□□□ -1.6
SYNE1-220ENST00000471834 PDE9AO76083 593 aa5.08□□□□□ -1.6
SYNE1-220ENST00000471834 HLA-DQA2P01906 255 aa5.08□□□□□ -1.6
SYNE1-220ENST00000471834 TNNI3P19429 210 aa5.08□□□□□ -1.6
SYNE1-220ENST00000471834 MAPK8P45983 427 aa5.08□□□□□ -1.6
SYNE1-220ENST00000471834 CCL23P55773 120 aa5.08□□□□□ -1.6
SYNE1-220ENST00000471834 RHOAP61586 193 aa5.08□□□□□ -1.6
SYNE1-220ENST00000471834 PUDPQ08623 228 aa5.08□□□□□ -1.6
SYNE1-220ENST00000471834 MINDY4Q4G0A6 757 aa5.08□□□□□ -1.6
SYNE1-220ENST00000471834 RGS7BPQ6MZT1 257 aaPredicted RBP5.08□□□□□ -1.6
SYNE1-220ENST00000471834 IL27RAQ6UWB1 636 aa5.08□□□□□ -1.6
SYNE1-220ENST00000471834 KIF18BQ86Y91 864 aa5.08□□□□□ -1.6
SYNE1-220ENST00000471834 FAM83FQ8NEG4 500 aaPredicted RBP5.08□□□□□ -1.6
SYNE1-220ENST00000471834 OR11H4Q8NGC9 324 aa5.08□□□□□ -1.6
SYNE1-220ENST00000471834 OR52K2Q8NGK3 314 aa5.08□□□□□ -1.6
SYNE1-220ENST00000471834 ITCHQ96J02 903 aa5.08□□□□□ -1.6
SYNE1-220ENST00000471834 PITHD1Q9GZP4 211 aaPredicted RBP5.08□□□□□ -1.6
SYNE1-220ENST00000471834 STMN3Q9NZ72 180 aa5.08□□□□□ -1.6
SYNE1-220ENST00000471834 NOSIPQ9Y314 301 aaKnown RBP5.08□□□□□ -1.6
SYNE1-220ENST00000471834 KPNA5O15131 536 aa5.08□□□□□ -1.6
SYNE1-220ENST00000471834 SRCP12931 536 aa5.08□□□□□ -1.6
SYNE1-220ENST00000471834 ICAM2P13598 275 aa5.08□□□□□ -1.6
SYNE1-220ENST00000471834 OSMP13725 252 aa5.08□□□□□ -1.6
SYNE1-220ENST00000471834 MYL9P24844 172 aa5.08□□□□□ -1.6
SYNE1-220ENST00000471834 CST5P28325 142 aaPredicted RBP5.08□□□□□ -1.6
SYNE1-220ENST00000471834 MAP3K8P41279 467 aa5.08□□□□□ -1.6
SYNE1-220ENST00000471834 CD86P42081 329 aa5.08□□□□□ -1.6
SYNE1-220ENST00000471834 ATP12AP54707 1039 aa5.08□□□□□ -1.6
SYNE1-220ENST00000471834 FOXK2Q01167 660 aa5.08□□□□□ -1.6
SYNE1-220ENST00000471834 NR6A1Q15406 480 aa5.08□□□□□ -1.6
SYNE1-220ENST00000471834 C6orf183Q5T699 404 aa5.08□□□□□ -1.6
SYNE1-220ENST00000471834 DPY19L3Q6ZPD9 716 aa5.08□□□□□ -1.6
SYNE1-220ENST00000471834 ANKRD46Q86W74 232 aa5.08□□□□□ -1.6
SYNE1-220ENST00000471834 CAMKK1Q8N5S9 505 aa5.08□□□□□ -1.6
SYNE1-220ENST00000471834 PLSCR3Q9NRY6 295 aa5.08□□□□□ -1.6
SYNE1-220ENST00000471834 MAT2BQ9NZL9 334 aa5.08□□□□□ -1.6
SYNE1-220ENST00000471834 MPP6Q9NZW5 540 aa5.08□□□□□ -1.6
SYNE1-220ENST00000471834 ZNF624Q9P2J8 865 aaPredicted RBP5.08□□□□□ -1.6
SYNE1-220ENST00000471834 LIMD1Q9UGP4 676 aa5.08□□□□□ -1.6
SYNE1-220ENST00000471834 SPACA6W5XKT8 324 aa5.08□□□□□ -1.6
SYNE1-220ENST00000471834 CHURC1-FNTBB4DL54 471 aa5.08□□□□□ -1.6
SYNE1-220ENST00000471834 ARVCFO00192 962 aa5.08□□□□□ -1.6
SYNE1-220ENST00000471834 TOR1BO14657 336 aa5.08□□□□□ -1.6
SYNE1-220ENST00000471834 STK16O75716 305 aa5.08□□□□□ -1.6
SYNE1-220ENST00000471834 PRKAR2AP13861 404 aaKnown RBP5.08□□□□□ -1.6
SYNE1-220ENST00000471834 APEX1P27695 318 aaKnown RBP5.08□□□□□ -1.6
SYNE1-220ENST00000471834 MAS1LP35410 378 aa5.08□□□□□ -1.6
SYNE1-220ENST00000471834 MMP12P39900 470 aa5.08□□□□□ -1.6
SYNE1-220ENST00000471834 RPIAP49247 311 aa5.08□□□□□ -1.6
SYNE1-220ENST00000471834 TBX4P57082 545 aa5.08□□□□□ -1.6
SYNE1-220ENST00000471834 PPP3R1P63098 170 aa5.08□□□□□ -1.6
SYNE1-220ENST00000471834 PUS10Q3MIT2 529 aaKnown RBP5.08□□□□□ -1.6
SYNE1-220ENST00000471834 UNQ9370/PRO34162Q6UXP9 181 aa5.08□□□□□ -1.6
SYNE1-220ENST00000471834 TMEM132CQ8N3T6 1108 aa5.08□□□□□ -1.6
SYNE1-220ENST00000471834 MORN4Q8NDC4 146 aa5.08□□□□□ -1.6
SYNE1-220ENST00000471834 ZNF540Q8NDQ6 660 aa5.08□□□□□ -1.6
SYNE1-220ENST00000471834 TRPV1Q8NER1 839 aa5.08□□□□□ -1.6
SYNE1-220ENST00000471834 LILRB1Q8NHL6 650 aaPredicted RBP5.08□□□□□ -1.6
SYNE1-220ENST00000471834 METTL6Q8TCB7 284 aa5.08□□□□□ -1.6
SYNE1-220ENST00000471834 SLC2A12Q8TD20 617 aa5.08□□□□□ -1.6
SYNE1-220ENST00000471834 C2orf15Q8WU43 125 aaKnown RBP5.08□□□□□ -1.6
SYNE1-220ENST00000471834 UFD1Q92890 307 aa5.08□□□□□ -1.6
SYNE1-220ENST00000471834 NXPE2Q96DL1 559 aa5.08□□□□□ -1.6
SYNE1-220ENST00000471834 CCDC3Q9BQI4 270 aa5.08□□□□□ -1.6
SYNE1-220ENST00000471834 CDCP1Q9H5V8 836 aa5.08□□□□□ -1.6
SYNE1-220ENST00000471834 LRTM1Q9HBL6 345 aa5.08□□□□□ -1.6
SYNE1-220ENST00000471834 SEMA4BQ9NPR2 832 aaPredicted RBP5.08□□□□□ -1.6
SYNE1-220ENST00000471834 TXNL4BQ9NX01 149 aaKnown RBP5.08□□□□□ -1.6
SYNE1-220ENST00000471834 MGAT4BQ9UQ53 548 aa5.08□□□□□ -1.6
SYNE1-220ENST00000471834 RUVBL1Q9Y265 456 aaKnown RBP5.08□□□□□ -1.6
SYNE1-220ENST00000471834 PQLC2LA1A4F0 135 aa5.08□□□□□ -1.6
SYNE1-220ENST00000471834 PTGES3LE9PB15 166 aa5.08□□□□□ -1.6
SYNE1-220ENST00000471834 BTN3A1O00481 513 aa5.08□□□□□ -1.6
SYNE1-220ENST00000471834 RGS14O43566 566 aa5.08□□□□□ -1.6
SYNE1-220ENST00000471834 IGF2P01344 180 aa5.08□□□□□ -1.6
SYNE1-220ENST00000471834 DNTTP04053 509 aa5.08□□□□□ -1.6
SYNE1-220ENST00000471834 ADH1AP07327 375 aa5.08□□□□□ -1.6
SYNE1-220ENST00000471834 LINC00032P0C843 101 aa5.08□□□□□ -1.6
SYNE1-220ENST00000471834 PEPDP12955 493 aa5.08□□□□□ -1.6
SYNE1-220ENST00000471834 MAP2K3P46734 347 aa5.08□□□□□ -1.6
SYNE1-220ENST00000471834 EPHA5P54756 1037 aa5.08□□□□□ -1.6
SYNE1-220ENST00000471834 NRG3P56975 720 aa5.08□□□□□ -1.6
SYNE1-220ENST00000471834 PIGFQ07326 219 aa5.08□□□□□ -1.6
SYNE1-220ENST00000471834 C2orf73Q8N5S3 287 aaPredicted RBP5.08□□□□□ -1.6
SYNE1-220ENST00000471834 COPS5Q92905 334 aa5.08□□□□□ -1.6
SYNE1-220ENST00000471834 LPPQ93052 612 aa5.08□□□□□ -1.6
SYNE1-220ENST00000471834 ASPNQ9BXN1 380 aa5.08□□□□□ -1.6
SYNE1-220ENST00000471834 MYNNQ9NPC7 610 aa5.08□□□□□ -1.6
SYNE1-220ENST00000471834 RPL36Q9Y3U8 105 aaKnown RBP5.08□□□□□ -1.6
SYNE1-220ENST00000471834 GPSM3Q9Y4H4 160 aa5.08□□□□□ -1.6
SYNE1-220ENST00000471834 SCN10AQ9Y5Y9 1956 aa5.08□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms