RNA–Protein interactions for RNA: ENST00000509638.5

LIMCH1-211, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-211ENST00000509638 KLHL14Q9P2G3 628 aa27.73■■■□□ 2.03
LIMCH1-211ENST00000509638 A0A1W2PQ72 361 aa27.73■■■□□ 2.03
LIMCH1-211ENST00000509638 GMNCA6NCL1 334 aa27.73■■■□□ 2.03
LIMCH1-211ENST00000509638 SYNDIG1LA6NDD5 238 aa27.73■■■□□ 2.03
LIMCH1-211ENST00000509638 SRRM3A6NNA2 597 aaPredicted RBP27.73■■■□□ 2.03
LIMCH1-211ENST00000509638 IFNA16P05015 189 aa27.73■■■□□ 2.03
LIMCH1-211ENST00000509638 PDE7AQ13946 482 aa27.73■■■□□ 2.03
LIMCH1-211ENST00000509638 ZNF750Q32MQ0 723 aa27.73■■■□□ 2.03
LIMCH1-211ENST00000509638 FAM9CQ8IZT9 166 aa27.73■■■□□ 2.03
LIMCH1-211ENST00000509638 THAP4Q8WY91 577 aa27.73■■■□□ 2.03
LIMCH1-211ENST00000509638 CATSPER2Q96P56 530 aa27.73■■■□□ 2.03
LIMCH1-211ENST00000509638 BRINP2Q9C0B6 783 aa27.73■■■□□ 2.03
LIMCH1-211ENST00000509638 ADAP2Q9NPF8 381 aa27.73■■■□□ 2.03
LIMCH1-211ENST00000509638 PNO1Q9NRX1 252 aaKnown RBP27.73■■■□□ 2.03
LIMCH1-211ENST00000509638 ENTPD4Q9Y227 616 aa27.73■■■□□ 2.03
LIMCH1-211ENST00000509638 GPR45Q9Y5Y3 372 aa27.73■■■□□ 2.03
LIMCH1-211ENST00000509638 IGHV1-45A0A0A0MS14 117 aa27.72■■■□□ 2.03
LIMCH1-211ENST00000509638 SEC24DO94855 1032 aaPredicted RBP27.72■■■□□ 2.03
LIMCH1-211ENST00000509638 PRPS1L1P21108 318 aa27.72■■■□□ 2.03
LIMCH1-211ENST00000509638 XKP51811 444 aa27.72■■■□□ 2.03
LIMCH1-211ENST00000509638 NME5P56597 212 aa27.72■■■□□ 2.03
LIMCH1-211ENST00000509638 CLDN8P56748 225 aa27.72■■■□□ 2.03
LIMCH1-211ENST00000509638 VAC14Q08AM6 782 aa27.72■■■□□ 2.03
LIMCH1-211ENST00000509638 PCOLCEQ15113 449 aa27.72■■■□□ 2.03
LIMCH1-211ENST00000509638 PPCDCQ96CD2 204 aa27.72■■■□□ 2.03
LIMCH1-211ENST00000509638 CNRIP1Q96F85 164 aaPredicted RBP27.72■■■□□ 2.03
LIMCH1-211ENST00000509638 VPS50Q96JG6 964 aa27.72■■■□□ 2.03
LIMCH1-211ENST00000509638 DGAT2Q96PD7 388 aa27.72■■■□□ 2.03
LIMCH1-211ENST00000509638 WDR77Q9BQA1 342 aaPredicted RBP27.72■■■□□ 2.03
LIMCH1-211ENST00000509638 ZNF700Q9H0M5 742 aa27.72■■■□□ 2.03
LIMCH1-211ENST00000509638 SLC35C2Q9NQQ7 365 aa27.72■■■□□ 2.03
LIMCH1-211ENST00000509638 POLHQ9Y253 713 aa27.72■■■□□ 2.03
LIMCH1-211ENST00000509638 MAN2B2Q9Y2E5 1009 aa27.72■■■□□ 2.03
LIMCH1-211ENST00000509638 ZNF780BQ9Y6R6 833 aa27.72■■■□□ 2.03
LIMCH1-211ENST00000509638 ANKRD28O15084 1053 aa27.71■■■□□ 2.03
LIMCH1-211ENST00000509638 OR10H2O60403 315 aa27.71■■■□□ 2.03
LIMCH1-211ENST00000509638 DRD4P21917 467 aa27.71■■■□□ 2.03
LIMCH1-211ENST00000509638 FEN1P39748 380 aaKnown RBP27.71■■■□□ 2.03
LIMCH1-211ENST00000509638 STT3AP46977 705 aa27.71■■■□□ 2.03
LIMCH1-211ENST00000509638 ARFIP2P53365 341 aa27.71■■■□□ 2.03
LIMCH1-211ENST00000509638 PRSS53Q2L4Q9 553 aa27.71■■■□□ 2.03
LIMCH1-211ENST00000509638 PAPD4Q6PIY7 484 aaKnown RBP27.71■■■□□ 2.03
LIMCH1-211ENST00000509638 R3HCC1LQ7Z5L2 792 aaKnown RBP27.71■■■□□ 2.03
LIMCH1-211ENST00000509638 RIMKLAQ8IXN7 391 aa27.71■■■□□ 2.03
LIMCH1-211ENST00000509638 ST13P4Q8IZP2 240 aaPredicted RBP27.71■■■□□ 2.03
LIMCH1-211ENST00000509638 ZNF764Q96H86 408 aaPredicted RBP27.71■■■□□ 2.03
LIMCH1-211ENST00000509638 DPY30Q9C005 99 aa27.71■■■□□ 2.03
LIMCH1-211ENST00000509638 GIMAP4Q9NUV9 329 aa27.71■■■□□ 2.03
LIMCH1-211ENST00000509638 A8MUA0 341 aa27.7■■■□□ 2.03
LIMCH1-211ENST00000509638 CPMP14384 443 aa27.7■■■□□ 2.03
LIMCH1-211ENST00000509638 RPL3P39023 403 aaKnown RBP27.7■■■□□ 2.03
LIMCH1-211ENST00000509638 C21orf58P58505 322 aa27.7■■■□□ 2.03
LIMCH1-211ENST00000509638 CXADRP78310 365 aa27.7■■■□□ 2.03
LIMCH1-211ENST00000509638 RPS6KA2Q15349 733 aa27.7■■■□□ 2.03
LIMCH1-211ENST00000509638 ELAVL1Q15717 326 aaKnown RBP27.7■■■□□ 2.03
LIMCH1-211ENST00000509638 GSTA3Q16772 222 aa27.7■■■□□ 2.03
LIMCH1-211ENST00000509638 ZNF385BQ569K4 471 aa27.7■■■□□ 2.03
LIMCH1-211ENST00000509638 OR7A2PQ8NGA2 310 aa27.7■■■□□ 2.03
LIMCH1-211ENST00000509638 NUDT8Q8WV74 236 aa27.7■■■□□ 2.03
LIMCH1-211ENST00000509638 MTERF3Q96E29 417 aa27.7■■■□□ 2.03
LIMCH1-211ENST00000509638 LPAR4Q99677 370 aa27.7■■■□□ 2.03
LIMCH1-211ENST00000509638 TAS2R7Q9NYW3 318 aa27.7■■■□□ 2.03
LIMCH1-211ENST00000509638 ADAM21Q9UKJ8 722 aa27.7■■■□□ 2.03
LIMCH1-211ENST00000509638 NSG1A0A0A6YYJ2 146 aa27.69■■■□□ 2.02
LIMCH1-211ENST00000509638 COX7A2P14406 83 aa27.69■■■□□ 2.02
LIMCH1-211ENST00000509638 DUSP2Q05923 314 aa27.69■■■□□ 2.02
LIMCH1-211ENST00000509638 NDUFAF7Q7L592 441 aa27.69■■■□□ 2.02
LIMCH1-211ENST00000509638 LRRC25Q8N386 305 aaPredicted RBP27.69■■■□□ 2.02
LIMCH1-211ENST00000509638 C7orf57Q8NEG2 295 aa27.69■■■□□ 2.02
LIMCH1-211ENST00000509638 C10orf82Q8WW14 230 aa27.69■■■□□ 2.02
LIMCH1-211ENST00000509638 PPWD1Q96BP3 646 aaKnown RBP27.69■■■□□ 2.02
LIMCH1-211ENST00000509638 ZNF681Q96N22 645 aa27.69■■■□□ 2.02
LIMCH1-211ENST00000509638 PELOQ9BRX2 385 aaKnown RBP27.69■■■□□ 2.02
LIMCH1-211ENST00000509638 ZNF160Q9HCG1 818 aa27.69■■■□□ 2.02
LIMCH1-211ENST00000509638 SH3BP4Q9P0V3 963 aa27.69■■■□□ 2.02
LIMCH1-211ENST00000509638 ATP6V1HQ9UI12 483 aa27.69■■■□□ 2.02
LIMCH1-211ENST00000509638 MED13Q9UHV7 2174 aa27.69■■■□□ 2.02
LIMCH1-211ENST00000509638 EPG5Q9HCE0 2579 aa27.69■■■□□ 2.02
LIMCH1-211ENST00000509638 GABRR3A8MPY1 467 aa27.69■■■□□ 2.02
LIMCH1-211ENST00000509638 TBX19O60806 448 aa27.69■■■□□ 2.02
LIMCH1-211ENST00000509638 SLC35E2P0CK97 266 aa27.69■■■□□ 2.02
LIMCH1-211ENST00000509638 PORP16435 677 aaPredicted RBP27.69■■■□□ 2.02
LIMCH1-211ENST00000509638 CSNK2A2P19784 350 aaPredicted RBP27.69■■■□□ 2.02
LIMCH1-211ENST00000509638 BIKQ13323 160 aa27.69■■■□□ 2.02
LIMCH1-211ENST00000509638 DEFB109BQ30KR1 87 aa27.69■■■□□ 2.02
LIMCH1-211ENST00000509638 SPATA21Q7Z572 469 aa27.69■■■□□ 2.02
LIMCH1-211ENST00000509638 CPLX4Q7Z7G2 160 aa27.69■■■□□ 2.02
LIMCH1-211ENST00000509638 RBM18Q96H35 190 aaKnown RBP27.69■■■□□ 2.02
LIMCH1-211ENST00000509638 TEX37Q96LM6 180 aa27.69■■■□□ 2.02
LIMCH1-211ENST00000509638 RABEP2Q9H5N1 569 aa27.69■■■□□ 2.02
LIMCH1-211ENST00000509638 SDR39U1Q9NRG7 319 aaPredicted RBP27.69■■■□□ 2.02
LIMCH1-211ENST00000509638 SAGE2PA6NJ88 616 aa27.68■■■□□ 2.02
LIMCH1-211ENST00000509638 MASP2O00187 686 aa27.68■■■□□ 2.02
LIMCH1-211ENST00000509638 HPP00738 406 aa27.68■■■□□ 2.02
LIMCH1-211ENST00000509638 UFM1P61960 85 aa27.68■■■□□ 2.02
LIMCH1-211ENST00000509638 TERF2Q15554 542 aa27.68■■■□□ 2.02
LIMCH1-211ENST00000509638 PDCD4Q53EL6 469 aaKnown RBP27.68■■■□□ 2.02
LIMCH1-211ENST00000509638 CPZQ66K79 652 aa27.68■■■□□ 2.02
LIMCH1-211ENST00000509638 SAMD14Q8IZD0 417 aaPredicted RBP27.68■■■□□ 2.02
LIMCH1-211ENST00000509638 CIDECQ96AQ7 238 aaPredicted RBP27.68■■■□□ 2.02
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms