RNA–Protein interactions for RNA: ENST00000514313.1

NUP54-215, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-215ENST00000514313 NUMBP49757 651 aa6.33□□□□□ -1.4
NUP54-215ENST00000514313 MTTPP55157 894 aa6.33□□□□□ -1.4
NUP54-215ENST00000514313 FUT7Q11130 342 aa6.33□□□□□ -1.4
NUP54-215ENST00000514313 DRP2Q13474 957 aa6.33□□□□□ -1.4
NUP54-215ENST00000514313 BTG3Q14201 252 aaPredicted RBP6.33□□□□□ -1.4
NUP54-215ENST00000514313 RFTN2Q52LD8 501 aaPredicted RBP6.33□□□□□ -1.4
NUP54-215ENST00000514313 PWWP2BQ6NUJ5 590 aa6.33□□□□□ -1.4
NUP54-215ENST00000514313 ABRAXAS1Q6UWZ7 409 aa6.33□□□□□ -1.4
NUP54-215ENST00000514313 ZNF730Q6ZMV8 503 aa6.33□□□□□ -1.4
NUP54-215ENST00000514313 Q6ZRG5 221 aa6.33□□□□□ -1.4
NUP54-215ENST00000514313 CHMP1BQ7LBR1 199 aa6.33□□□□□ -1.4
NUP54-215ENST00000514313 COLGALT1Q8NBJ5 622 aa6.33□□□□□ -1.4
NUP54-215ENST00000514313 OR9Q2Q8NGE9 314 aa6.33□□□□□ -1.4
NUP54-215ENST00000514313 LIPHQ8WWY8 451 aa6.33□□□□□ -1.4
NUP54-215ENST00000514313 TMEM190Q8WZ59 177 aa6.33□□□□□ -1.4
NUP54-215ENST00000514313 COG3Q96JB2 828 aa6.33□□□□□ -1.4
NUP54-215ENST00000514313 MAGED4Q96JG8 741 aa6.33□□□□□ -1.4
NUP54-215ENST00000514313 HOXD1Q9GZZ0 328 aa6.33□□□□□ -1.4
NUP54-215ENST00000514313 UBE2TQ9NPD8 197 aaPredicted RBP6.33□□□□□ -1.4
NUP54-215ENST00000514313 ERVK-18Q9QC07 812 aa6.33□□□□□ -1.4
NUP54-215ENST00000514313 PYGO1Q9Y3Y4 419 aa6.33□□□□□ -1.4
NUP54-215ENST00000514313 ZMYM6O95789 1325 aa6.32□□□□□ -1.4
NUP54-215ENST00000514313 KIF7Q2M1P5 1343 aa6.32□□□□□ -1.4
NUP54-215ENST00000514313 CLDN1O95832 211 aa6.32□□□□□ -1.4
NUP54-215ENST00000514313 HIST1H2AGP0C0S8 130 aaPredicted RBP6.32□□□□□ -1.4
NUP54-215ENST00000514313 CEBPBP17676 345 aa6.32□□□□□ -1.4
NUP54-215ENST00000514313 EDNRAP25101 427 aa6.32□□□□□ -1.4
NUP54-215ENST00000514313 SLC6A8P48029 635 aa6.32□□□□□ -1.4
NUP54-215ENST00000514313 SNRPD1P62314 119 aaKnown RBP6.32□□□□□ -1.4
NUP54-215ENST00000514313 GNB1P62873 340 aa6.32□□□□□ -1.4
NUP54-215ENST00000514313 TRA2BP62995 288 aaKnown RBP6.32□□□□□ -1.4
NUP54-215ENST00000514313 PMP22Q01453 160 aa6.32□□□□□ -1.4
NUP54-215ENST00000514313 PDZK1IP1Q13113 114 aa6.32□□□□□ -1.4
NUP54-215ENST00000514313 BHLHB9Q6PI77 547 aa6.32□□□□□ -1.4
NUP54-215ENST00000514313 AFTPHQ6ULP2 937 aa6.32□□□□□ -1.4
NUP54-215ENST00000514313 ARSKQ6UWY0 536 aa6.32□□□□□ -1.4
NUP54-215ENST00000514313 HIST2H2ABQ8IUE6 130 aaPredicted RBP6.32□□□□□ -1.4
NUP54-215ENST00000514313 BCORP1Q8N888 145 aa6.32□□□□□ -1.4
NUP54-215ENST00000514313 RELL2Q8NC24 303 aaPredicted RBP6.32□□□□□ -1.4
NUP54-215ENST00000514313 IPMKQ8NFU5 416 aa6.32□□□□□ -1.4
NUP54-215ENST00000514313 GOLGA5Q8TBA6 731 aa6.32□□□□□ -1.4
NUP54-215ENST00000514313 HIST1H2ACQ93077 130 aa6.32□□□□□ -1.4
NUP54-215ENST00000514313 DEFB118Q96PH6 123 aa6.32□□□□□ -1.4
NUP54-215ENST00000514313 THUMPD2Q9BTF0 503 aaKnown RBP6.32□□□□□ -1.4
NUP54-215ENST00000514313 NACA2Q9H009 215 aa6.32□□□□□ -1.4
NUP54-215ENST00000514313 KLHL8Q9P2G9 620 aaPredicted RBP6.32□□□□□ -1.4
NUP54-215ENST00000514313 LNPEPQ9UIQ6 1025 aa6.32□□□□□ -1.4
NUP54-215ENST00000514313 ICAM5Q9UMF0 924 aa6.32□□□□□ -1.4
NUP54-215ENST00000514313 NPIPB9F8W1W9 429 aa6.31□□□□□ -1.4
NUP54-215ENST00000514313 SLCO1B7G3V0H7 640 aa6.31□□□□□ -1.4
NUP54-215ENST00000514313 CHADO15335 359 aa6.31□□□□□ -1.4
NUP54-215ENST00000514313 KIAA0513O60268 411 aa6.31□□□□□ -1.4
NUP54-215ENST00000514313 MAGEA4P43358 317 aa6.31□□□□□ -1.4
NUP54-215ENST00000514313 TRPC1P48995 793 aa6.31□□□□□ -1.4
NUP54-215ENST00000514313 NME3Q13232 169 aa6.31□□□□□ -1.4
NUP54-215ENST00000514313 TEX35Q5T0J7 233 aa6.31□□□□□ -1.4
NUP54-215ENST00000514313 ARHGAP17Q68EM7 881 aa6.31□□□□□ -1.4
NUP54-215ENST00000514313 NEPROQ6NW34 567 aa6.31□□□□□ -1.4
NUP54-215ENST00000514313 Q6ZRP5 223 aa6.31□□□□□ -1.4
NUP54-215ENST00000514313 NR2C2APQ86WQ0 139 aa6.31□□□□□ -1.4
NUP54-215ENST00000514313 OR4N5Q8IXE1 308 aa6.31□□□□□ -1.4
NUP54-215ENST00000514313 CERS5Q8N5B7 392 aa6.31□□□□□ -1.4
NUP54-215ENST00000514313 C9orf106Q8NAJ2 232 aa6.31□□□□□ -1.4
NUP54-215ENST00000514313 ZNF300Q96RE9 604 aaPredicted RBP6.31□□□□□ -1.4
NUP54-215ENST00000514313 F2RL3Q96RI0 385 aa6.31□□□□□ -1.4
NUP54-215ENST00000514313 PINK1Q9BXM7 581 aa6.31□□□□□ -1.4
NUP54-215ENST00000514313 CLEC7AQ9BXN2 247 aa6.31□□□□□ -1.4
NUP54-215ENST00000514313 MTHFD2LQ9H903 347 aaPredicted RBP6.31□□□□□ -1.4
NUP54-215ENST00000514313 YAE1D1Q9NRH1 226 aa6.31□□□□□ -1.4
NUP54-215ENST00000514313 LHX3Q9UBR4 397 aa6.31□□□□□ -1.4
NUP54-215ENST00000514313 KLK11Q9UBX7 282 aa6.31□□□□□ -1.4
NUP54-215ENST00000514313 TCF19Q9Y242 345 aa6.31□□□□□ -1.4
NUP54-215ENST00000514313 CSNK1G3Q9Y6M4 447 aa6.31□□□□□ -1.4
NUP54-215ENST00000514313 NCAPD2Q15021 1401 aa6.31□□□□□ -1.4
NUP54-215ENST00000514313 A0A087WZY1 265 aa6.3□□□□□ -1.4
NUP54-215ENST00000514313 HHLA1C9JL84 531 aa6.3□□□□□ -1.4
NUP54-215ENST00000514313 ARPC1BO15143 372 aaKnown RBP6.3□□□□□ -1.4
NUP54-215ENST00000514313 CEACAM4O75871 244 aa6.3□□□□□ -1.4
NUP54-215ENST00000514313 CYP11B1P15538 503 aa6.3□□□□□ -1.4
NUP54-215ENST00000514313 IL4RP24394 825 aa6.3□□□□□ -1.4
NUP54-215ENST00000514313 TMOD1P28289 359 aa6.3□□□□□ -1.4
NUP54-215ENST00000514313 MMP12P39900 470 aa6.3□□□□□ -1.4
NUP54-215ENST00000514313 TSFMP43897 325 aaKnown RBP6.3□□□□□ -1.4
NUP54-215ENST00000514313 NPY2RP49146 381 aa6.3□□□□□ -1.4
NUP54-215ENST00000514313 RPL27P61353 136 aaKnown RBP6.3□□□□□ -1.4
NUP54-215ENST00000514313 KLF5Q13887 457 aaPredicted RBP6.3□□□□□ -1.4
NUP54-215ENST00000514313 P2RY14Q15391 338 aa6.3□□□□□ -1.4
NUP54-215ENST00000514313 CLPPQ16740 277 aaPredicted RBP6.3□□□□□ -1.4
NUP54-215ENST00000514313 ZNF876PQ49A33 203 aa6.3□□□□□ -1.4
NUP54-215ENST00000514313 ADAMTSL4-AS1Q5T5F5 129 aa6.3□□□□□ -1.4
NUP54-215ENST00000514313 RIPPLY2Q5TAB7 128 aa6.3□□□□□ -1.4
NUP54-215ENST00000514313 CES4AQ5XG92 561 aa6.3□□□□□ -1.4
NUP54-215ENST00000514313 GMPPAQ96IJ6 420 aaPredicted RBP6.3□□□□□ -1.4
NUP54-215ENST00000514313 PGLYRP2Q96PD5 576 aa6.3□□□□□ -1.4
NUP54-215ENST00000514313 VAT1LQ9HCJ6 419 aa6.3□□□□□ -1.4
NUP54-215ENST00000514313 ATAD3AQ9NVI7 634 aa6.3□□□□□ -1.4
NUP54-215ENST00000514313 MIOXQ9UGB7 285 aa6.3□□□□□ -1.4
NUP54-215ENST00000514313 MGAT4BQ9UQ53 548 aa6.3□□□□□ -1.4
NUP54-215ENST00000514313 ABCC4O15439 1325 aa6.29□□□□□ -1.4
NUP54-215ENST00000514313 FAM230AA0A1W2PPH8 454 aa6.29□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 61.3 ms