RNA–Protein interactions for RNA: ENST00000509638.5

LIMCH1-211, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-211ENST00000509638 LSM12Q3MHD2 195 aaKnown RBP27.8■■■□□ 2.04
LIMCH1-211ENST00000509638 SLC48A1Q6P1K1 146 aa27.8■■■□□ 2.04
LIMCH1-211ENST00000509638 PLPP5Q8NEB5 264 aa27.8■■■□□ 2.04
LIMCH1-211ENST00000509638 CEP70Q8NHQ1 597 aa27.8■■■□□ 2.04
LIMCH1-211ENST00000509638 DNAJB14Q8TBM8 379 aa27.8■■■□□ 2.04
LIMCH1-211ENST00000509638 GFM2Q969S9 779 aaKnown RBP27.8■■■□□ 2.04
LIMCH1-211ENST00000509638 C8orf44Q96CB5 159 aa27.8■■■□□ 2.04
LIMCH1-211ENST00000509638 MGAQ8IWI9 3026 aa27.8■■■□□ 2.04
LIMCH1-211ENST00000509638 A0A0G2JND7 137 aa27.79■■■□□ 2.04
LIMCH1-211ENST00000509638 CDC14CA4D256 554 aa27.79■■■□□ 2.04
LIMCH1-211ENST00000509638 LRATO95237 230 aa27.79■■■□□ 2.04
LIMCH1-211ENST00000509638 FURINP09958 794 aa27.79■■■□□ 2.04
LIMCH1-211ENST00000509638 DRD2P14416 443 aa27.79■■■□□ 2.04
LIMCH1-211ENST00000509638 ASMTP46597 345 aa27.79■■■□□ 2.04
LIMCH1-211ENST00000509638 C2orf80Q0P641 193 aa27.79■■■□□ 2.04
LIMCH1-211ENST00000509638 CDC20Q12834 499 aa27.79■■■□□ 2.04
LIMCH1-211ENST00000509638 OR4N5Q8IXE1 308 aa27.79■■■□□ 2.04
LIMCH1-211ENST00000509638 ZSCAN1Q8NBB4 408 aa27.79■■■□□ 2.04
LIMCH1-211ENST00000509638 ANKRD9Q96BM1 317 aaPredicted RBP27.79■■■□□ 2.04
LIMCH1-211ENST00000509638 CPNE5Q9HCH3 593 aa27.79■■■□□ 2.04
LIMCH1-211ENST00000509638 MIEF1Q9NQG6 463 aa27.79■■■□□ 2.04
LIMCH1-211ENST00000509638 WBP11Q9Y2W2 641 aaKnown RBP27.79■■■□□ 2.04
LIMCH1-211ENST00000509638 TCRBV16S1A1N1A0A5B0 115 aa27.78■■■□□ 2.04
LIMCH1-211ENST00000509638 DDCP20711 480 aa27.78■■■□□ 2.04
LIMCH1-211ENST00000509638 SEC24CP53992 1094 aa27.78■■■□□ 2.04
LIMCH1-211ENST00000509638 UCNP55089 124 aa27.78■■■□□ 2.04
LIMCH1-211ENST00000509638 STX4Q12846 297 aa27.78■■■□□ 2.04
LIMCH1-211ENST00000509638 TMEM198Q66K66 360 aa27.78■■■□□ 2.04
LIMCH1-211ENST00000509638 TMEM205Q6UW68 189 aa27.78■■■□□ 2.04
LIMCH1-211ENST00000509638 ANKRD37Q7Z713 158 aa27.78■■■□□ 2.04
LIMCH1-211ENST00000509638 PARP9Q8IXQ6 854 aa27.78■■■□□ 2.04
LIMCH1-211ENST00000509638 MARK4Q96L34 752 aa27.78■■■□□ 2.04
LIMCH1-211ENST00000509638 C19orf25Q9UFG5 118 aaPredicted RBP27.78■■■□□ 2.04
LIMCH1-211ENST00000509638 ZMIZ1Q9ULJ6 1067 aa27.78■■■□□ 2.04
LIMCH1-211ENST00000509638 EXO1Q9UQ84 846 aaKnown RBP27.78■■■□□ 2.04
LIMCH1-211ENST00000509638 PKD1L2Q7Z442 2459 aa27.78■■■□□ 2.04
LIMCH1-211ENST00000509638 E9PBE3 544 aa27.77■■■□□ 2.04
LIMCH1-211ENST00000509638 SOCS6O14544 535 aa27.77■■■□□ 2.04
LIMCH1-211ENST00000509638 AKAP10O43572 662 aa27.77■■■□□ 2.04
LIMCH1-211ENST00000509638 KLHL41O60662 606 aa27.77■■■□□ 2.04
LIMCH1-211ENST00000509638 TMPRSS3P57727 454 aa27.77■■■□□ 2.04
LIMCH1-211ENST00000509638 EEF1A2Q05639 463 aaKnown RBP27.77■■■□□ 2.04
LIMCH1-211ENST00000509638 SF3A3Q12874 501 aaKnown RBP eCLIP27.77■■■□□ 2.04
LIMCH1-211ENST00000509638 ATP1A4Q13733 1029 aa27.77■■■□□ 2.04
LIMCH1-211ENST00000509638 SPATA19Q7Z5L4 167 aa27.77■■■□□ 2.04
LIMCH1-211ENST00000509638 KLHL29Q96CT2 875 aa27.77■■■□□ 2.04
LIMCH1-211ENST00000509638 CNTNAP3BQ96NU0 1288 aa27.77■■■□□ 2.04
LIMCH1-211ENST00000509638 CNTNAP3Q9BZ76 1288 aa27.77■■■□□ 2.04
LIMCH1-211ENST00000509638 CES1P1Q9UKY3 287 aa27.77■■■□□ 2.04
LIMCH1-211ENST00000509638 MYOCOSA0A1B0GUC4 107 aa27.77■■■□□ 2.04
LIMCH1-211ENST00000509638 PCDH17O14917 1159 aa27.77■■■□□ 2.04
LIMCH1-211ENST00000509638 CRTC2Q53ET0 693 aaPredicted RBP27.77■■■□□ 2.04
LIMCH1-211ENST00000509638 KIRREL2Q6UWL6 708 aa27.77■■■□□ 2.04
LIMCH1-211ENST00000509638 STON2Q8WXE9 905 aa27.77■■■□□ 2.04
LIMCH1-211ENST00000509638 NACC2Q96BF6 587 aa27.77■■■□□ 2.04
LIMCH1-211ENST00000509638 KCNK13Q9HB14 408 aa27.77■■■□□ 2.04
LIMCH1-211ENST00000509638 AIG1Q9NVV5 245 aa27.77■■■□□ 2.04
LIMCH1-211ENST00000509638 EHD3Q9NZN3 535 aa27.77■■■□□ 2.04
LIMCH1-211ENST00000509638 UTS2RQ9UKP6 389 aa27.77■■■□□ 2.04
LIMCH1-211ENST00000509638 HPCAL1P37235 193 aa27.76■■■□□ 2.03
LIMCH1-211ENST00000509638 ACTN3Q08043 901 aaPredicted RBP27.76■■■□□ 2.03
LIMCH1-211ENST00000509638 TICAM1Q8IUC6 712 aa27.76■■■□□ 2.03
LIMCH1-211ENST00000509638 CCDC28BQ9BUN5 200 aa27.76■■■□□ 2.03
LIMCH1-211ENST00000509638 TMEM120AQ9BXJ8 343 aa27.76■■■□□ 2.03
LIMCH1-211ENST00000509638 LOC102723996A0A087X1L8 192 aa27.75■■■□□ 2.03
LIMCH1-211ENST00000509638 A0A1W2PS29 197 aa27.75■■■□□ 2.03
LIMCH1-211ENST00000509638 GPR75O95800 540 aa27.75■■■□□ 2.03
LIMCH1-211ENST00000509638 PIK3R1P27986 724 aa27.75■■■□□ 2.03
LIMCH1-211ENST00000509638 IGLV3-21P80748 117 aaPredicted RBP27.75■■■□□ 2.03
LIMCH1-211ENST00000509638 SERTAD2Q14140 314 aa27.75■■■□□ 2.03
LIMCH1-211ENST00000509638 FAM180BQ6P0A1 224 aa27.75■■■□□ 2.03
LIMCH1-211ENST00000509638 OR11G2Q8NGC1 345 aa27.75■■■□□ 2.03
LIMCH1-211ENST00000509638 OR4K14Q8NGD5 310 aa27.75■■■□□ 2.03
LIMCH1-211ENST00000509638 EXOSC8Q96B26 276 aaKnown RBP27.75■■■□□ 2.03
LIMCH1-211ENST00000509638 ALOXE3Q9BYJ1 711 aa27.75■■■□□ 2.03
LIMCH1-211ENST00000509638 FAM107BQ9H098 131 aa27.75■■■□□ 2.03
LIMCH1-211ENST00000509638 REEP4Q9H6H4 257 aa27.75■■■□□ 2.03
LIMCH1-211ENST00000509638 P4HTMQ9NXG6 502 aa27.75■■■□□ 2.03
LIMCH1-211ENST00000509638 IGHV3-20A0A0C4DH32 117 aa27.74■■■□□ 2.03
LIMCH1-211ENST00000509638 UBDO15205 165 aa27.74■■■□□ 2.03
LIMCH1-211ENST00000509638 ERAL1O75616 437 aaKnown RBP27.74■■■□□ 2.03
LIMCH1-211ENST00000509638 OR4D2P58180 307 aa27.74■■■□□ 2.03
LIMCH1-211ENST00000509638 SFT2D3Q587I9 215 aa27.74■■■□□ 2.03
LIMCH1-211ENST00000509638 ANKRD26P1Q6NSI1 321 aa27.74■■■□□ 2.03
LIMCH1-211ENST00000509638 CPEB2Q7Z5Q1 589 aaKnown RBP27.74■■■□□ 2.03
LIMCH1-211ENST00000509638 KRTCAP2Q8N6L1 136 aa27.74■■■□□ 2.03
LIMCH1-211ENST00000509638 IP6K3Q96PC2 410 aa27.74■■■□□ 2.03
LIMCH1-211ENST00000509638 FBXL4Q9UKA2 621 aa27.74■■■□□ 2.03
LIMCH1-211ENST00000509638 PSME2Q9UL46 239 aa27.74■■■□□ 2.03
LIMCH1-211ENST00000509638 G3BP2Q9UN86 482 aaKnown RBP27.74■■■□□ 2.03
LIMCH1-211ENST00000509638 ITPR1Q14643 2758 aa27.74■■■□□ 2.03
LIMCH1-211ENST00000509638 K7ENP7 123 aa27.73■■■□□ 2.03
LIMCH1-211ENST00000509638 PEX12O00623 359 aa27.73■■■□□ 2.03
LIMCH1-211ENST00000509638 SCAMP2O15127 329 aaKnown RBP27.73■■■□□ 2.03
LIMCH1-211ENST00000509638 COX6A1P12074 109 aa27.73■■■□□ 2.03
LIMCH1-211ENST00000509638 IDO1P14902 403 aa27.73■■■□□ 2.03
LIMCH1-211ENST00000509638 PLIN5Q00G26 463 aa27.73■■■□□ 2.03
LIMCH1-211ENST00000509638 INO80CQ6PI98 192 aaPredicted RBP27.73■■■□□ 2.03
LIMCH1-211ENST00000509638 RILPQ96NA2 401 aa27.73■■■□□ 2.03
LIMCH1-211ENST00000509638 NSRP1Q9H0G5 558 aaKnown RBP27.73■■■□□ 2.03
Retrieved 100 of 20,778 RNA–protein pairs in 46.6 ms