RNA–Protein interactions for RNA: ENST00000514313.1

NUP54-215, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-215ENST00000514313 PARP8Q8N3A8 854 aa6.37□□□□□ -1.39
NUP54-215ENST00000514313 OR5T2Q8NGG2 359 aa6.37□□□□□ -1.39
NUP54-215ENST00000514313 RPLP0P6Q8NHW5 317 aa6.37□□□□□ -1.39
NUP54-215ENST00000514313 C8orf46Q8TAG6 207 aa6.37□□□□□ -1.39
NUP54-215ENST00000514313 MAPK15Q8TD08 544 aa6.37□□□□□ -1.39
NUP54-215ENST00000514313 CXXC4Q9H2H0 198 aa6.37□□□□□ -1.39
NUP54-215ENST00000514313 ECT2Q9H8V3 914 aa6.37□□□□□ -1.39
NUP54-215ENST00000514313 ROPN1Q9HAT0 212 aaPredicted RBP6.37□□□□□ -1.39
NUP54-215ENST00000514313 HPS4Q9NQG7 708 aa6.37□□□□□ -1.39
NUP54-215ENST00000514313 NOL3O60936 208 aaKnown RBP6.36□□□□□ -1.39
NUP54-215ENST00000514313 LYNP07948 512 aa6.36□□□□□ -1.39
NUP54-215ENST00000514313 NCF1P14598 390 aaPredicted RBP6.36□□□□□ -1.39
NUP54-215ENST00000514313 CHRNB4P30926 498 aa6.36□□□□□ -1.39
NUP54-215ENST00000514313 ALDH3B1P43353 468 aa6.36□□□□□ -1.39
NUP54-215ENST00000514313 PDIA5Q14554 519 aa6.36□□□□□ -1.39
NUP54-215ENST00000514313 MTF1Q14872 753 aa6.36□□□□□ -1.39
NUP54-215ENST00000514313 AGKQ53H12 422 aa6.36□□□□□ -1.39
NUP54-215ENST00000514313 HIST2H2AA3Q6FI13 130 aa6.36□□□□□ -1.39
NUP54-215ENST00000514313 FAM159AQ6UWV7 190 aa6.36□□□□□ -1.39
NUP54-215ENST00000514313 YRDCQ86U90 279 aaKnown RBP6.36□□□□□ -1.39
NUP54-215ENST00000514313 CATSPERDQ86XM0 798 aa6.36□□□□□ -1.39
NUP54-215ENST00000514313 DCUN1D3Q8IWE4 304 aa6.36□□□□□ -1.39
NUP54-215ENST00000514313 ATP8B4Q8TF62 1192 aa6.36□□□□□ -1.39
NUP54-215ENST00000514313 CBWD1Q9BRT8 395 aa6.36□□□□□ -1.39
NUP54-215ENST00000514313 SDF2L1Q9HCN8 221 aa6.36□□□□□ -1.39
NUP54-215ENST00000514313 DISP3Q9P2K9 1392 aa6.35□□□□□ -1.39
NUP54-215ENST00000514313 C15orf61A6NNL5 157 aa6.35□□□□□ -1.39
NUP54-215ENST00000514313 YJEFN3A6XGL0 299 aa6.35□□□□□ -1.39
NUP54-215ENST00000514313 A8MU76 341 aa6.35□□□□□ -1.39
NUP54-215ENST00000514313 TCP10L2B9ZVM9 353 aa6.35□□□□□ -1.39
NUP54-215ENST00000514313 CCSO14618 274 aa6.35□□□□□ -1.39
NUP54-215ENST00000514313 SCGB2A1O75556 95 aa6.35□□□□□ -1.39
NUP54-215ENST00000514313 AK1P00568 194 aa6.35□□□□□ -1.39
NUP54-215ENST00000514313 RPLP0P05388 317 aaKnown RBP6.35□□□□□ -1.39
NUP54-215ENST00000514313 RALAP11233 206 aa6.35□□□□□ -1.39
NUP54-215ENST00000514313 HLA-FP30511 346 aa6.35□□□□□ -1.39
NUP54-215ENST00000514313 PRDX2P32119 198 aa6.35□□□□□ -1.39
NUP54-215ENST00000514313 OPRL1P41146 370 aa6.35□□□□□ -1.39
NUP54-215ENST00000514313 FHITP49789 147 aa6.35□□□□□ -1.39
NUP54-215ENST00000514313 SNX1Q13596 522 aa6.35□□□□□ -1.39
NUP54-215ENST00000514313 LIPKQ5VXJ0 399 aa6.35□□□□□ -1.39
NUP54-215ENST00000514313 TRIM65Q6PJ69 517 aa6.35□□□□□ -1.39
NUP54-215ENST00000514313 AMZ2Q86W34 360 aa6.35□□□□□ -1.39
NUP54-215ENST00000514313 CNPY4Q8N129 248 aa6.35□□□□□ -1.39
NUP54-215ENST00000514313 ZNF540Q8NDQ6 660 aa6.35□□□□□ -1.39
NUP54-215ENST00000514313 FAM71CQ8NEG0 241 aa6.35□□□□□ -1.39
NUP54-215ENST00000514313 U2AF1L4Q8WU68 220 aaKnown RBP6.35□□□□□ -1.39
NUP54-215ENST00000514313 SELENOMQ8WWX9 145 aa6.35□□□□□ -1.39
NUP54-215ENST00000514313 P3H4Q92791 437 aa6.35□□□□□ -1.39
NUP54-215ENST00000514313 TMEM45BQ96B21 275 aa6.35□□□□□ -1.39
NUP54-215ENST00000514313 INPP4AQ96PE3 977 aaPredicted RBP6.35□□□□□ -1.39
NUP54-215ENST00000514313 CTAGE1Q96RT6 745 aa6.35□□□□□ -1.39
NUP54-215ENST00000514313 RAB40CQ96S21 281 aa6.35□□□□□ -1.39
NUP54-215ENST00000514313 NMNAT2Q9BZQ4 307 aa6.35□□□□□ -1.39
NUP54-215ENST00000514313 SLC35D1Q9NTN3 355 aa6.35□□□□□ -1.39
NUP54-215ENST00000514313 C2orf42Q9NWW7 574 aa6.35□□□□□ -1.39
NUP54-215ENST00000514313 CGNQ9P2M7 1197 aaKnown RBP6.35□□□□□ -1.39
NUP54-215ENST00000514313 PPP1R3CQ9UQK1 317 aa6.35□□□□□ -1.39
NUP54-215ENST00000514313 ENTPD4Q9Y227 616 aa6.35□□□□□ -1.39
NUP54-215ENST00000514313 ERVV-2B6SEH9 535 aa6.34□□□□□ -1.39
NUP54-215ENST00000514313 FAM72CH0Y354 149 aa6.34□□□□□ -1.39
NUP54-215ENST00000514313 KCNAB3O43448 404 aa6.34□□□□□ -1.39
NUP54-215ENST00000514313 LANCL1O43813 399 aa6.34□□□□□ -1.39
NUP54-215ENST00000514313 MAGEC1O60732 1142 aa6.34□□□□□ -1.39
NUP54-215ENST00000514313 PEX11AO75192 247 aa6.34□□□□□ -1.39
NUP54-215ENST00000514313 GNB3P16520 340 aa6.34□□□□□ -1.39
NUP54-215ENST00000514313 PTPN4P29074 926 aa6.34□□□□□ -1.39
NUP54-215ENST00000514313 MDH1P40925 334 aaKnown RBP6.34□□□□□ -1.39
NUP54-215ENST00000514313 MYBPC1Q00872 1141 aa6.34□□□□□ -1.39
NUP54-215ENST00000514313 SCGB2A2Q13296 93 aa6.34□□□□□ -1.39
NUP54-215ENST00000514313 TRADDQ15628 312 aa6.34□□□□□ -1.39
NUP54-215ENST00000514313 ZNF528Q3MIS6 628 aa6.34□□□□□ -1.39
NUP54-215ENST00000514313 DCAF12Q5T6F0 453 aa6.34□□□□□ -1.39
NUP54-215ENST00000514313 FAM72AQ5TYM5 149 aa6.34□□□□□ -1.39
NUP54-215ENST00000514313 IL23RQ5VWK5 629 aa6.34□□□□□ -1.39
NUP54-215ENST00000514313 FAM72DQ6L9T8 149 aa6.34□□□□□ -1.39
NUP54-215ENST00000514313 FIP1L1Q6UN15 594 aaKnown RBP6.34□□□□□ -1.39
NUP54-215ENST00000514313 MEX3BQ6ZN04 569 aaKnown RBP6.34□□□□□ -1.39
NUP54-215ENST00000514313 ITIH5Q86UX2 942 aa6.34□□□□□ -1.39
NUP54-215ENST00000514313 FAM72BQ86X60 149 aa6.34□□□□□ -1.39
NUP54-215ENST00000514313 OR52B4Q8NGK2 314 aa6.34□□□□□ -1.39
NUP54-215ENST00000514313 OR5M9Q8NGP3 310 aa6.34□□□□□ -1.39
NUP54-215ENST00000514313 PHYHIPQ92561 330 aa6.34□□□□□ -1.39
NUP54-215ENST00000514313 FCGR1BQ92637 280 aa6.34□□□□□ -1.39
NUP54-215ENST00000514313 MRPL24Q96A35 216 aaKnown RBP6.34□□□□□ -1.39
NUP54-215ENST00000514313 ZNF501Q96CX3 271 aaPredicted RBP6.34□□□□□ -1.39
NUP54-215ENST00000514313 COQ10BQ9H8M1 238 aa6.34□□□□□ -1.39
NUP54-215ENST00000514313 ACTR8Q9H981 624 aa6.34□□□□□ -1.39
NUP54-215ENST00000514313 GDF3Q9NR23 364 aa6.34□□□□□ -1.39
NUP54-215ENST00000514313 VPS54Q9P1Q0 977 aa6.34□□□□□ -1.39
NUP54-215ENST00000514313 U3KQV3 271 aa6.34□□□□□ -1.39
NUP54-215ENST00000514313 TLX2O43763 284 aaPredicted RBP6.33□□□□□ -1.4
NUP54-215ENST00000514313 CSO75390 466 aaKnown RBP6.33□□□□□ -1.4
NUP54-215ENST00000514313 CSDE1O75534 798 aaKnown RBP6.33□□□□□ -1.4
NUP54-215ENST00000514313 ANXA9O76027 345 aa6.33□□□□□ -1.4
NUP54-215ENST00000514313 IGHEP01854 428 aa6.33□□□□□ -1.4
NUP54-215ENST00000514313 APRTP07741 180 aa6.33□□□□□ -1.4
NUP54-215ENST00000514313 MYOGP15173 224 aa6.33□□□□□ -1.4
NUP54-215ENST00000514313 GPR183P32249 361 aa6.33□□□□□ -1.4
NUP54-215ENST00000514313 ACADSBP45954 432 aa6.33□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 79 ms