RNA–Protein interactions for RNA: ENST00000509638.5

LIMCH1-211, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-211ENST00000509638 OTX2P32243 289 aa27.84■■■□□ 2.05
LIMCH1-211ENST00000509638 GSTM5P46439 218 aa27.84■■■□□ 2.05
LIMCH1-211ENST00000509638 HSD17B7P56937 341 aa27.84■■■□□ 2.05
LIMCH1-211ENST00000509638 EMX2Q04743 252 aa27.84■■■□□ 2.05
LIMCH1-211ENST00000509638 MAD2L1Q13257 205 aaPredicted RBP27.84■■■□□ 2.05
LIMCH1-211ENST00000509638 SMU1Q2TAY7 513 aa27.84■■■□□ 2.05
LIMCH1-211ENST00000509638 BROXQ5VW32 411 aa27.84■■■□□ 2.05
LIMCH1-211ENST00000509638 IL23RQ5VWK5 629 aa27.84■■■□□ 2.05
LIMCH1-211ENST00000509638 NXNQ6DKJ4 435 aa27.84■■■□□ 2.05
LIMCH1-211ENST00000509638 FAAH2Q6GMR7 532 aa27.84■■■□□ 2.05
LIMCH1-211ENST00000509638 CLNKQ7Z7G1 428 aa27.84■■■□□ 2.05
LIMCH1-211ENST00000509638 SCUBE1Q8IWY4 988 aa27.84■■■□□ 2.05
LIMCH1-211ENST00000509638 LIX1Q8N485 282 aa27.84■■■□□ 2.05
LIMCH1-211ENST00000509638 CLHC1Q8NHS4 586 aa27.84■■■□□ 2.05
LIMCH1-211ENST00000509638 OR52B2Q96RD2 323 aa27.84■■■□□ 2.05
LIMCH1-211ENST00000509638 FAIM2Q9BWQ8 316 aa27.84■■■□□ 2.05
LIMCH1-211ENST00000509638 PRDM9Q9NQV7 894 aa27.84■■■□□ 2.05
LIMCH1-211ENST00000509638 NOP53Q9NZM5 478 aaKnown RBP27.84■■■□□ 2.05
LIMCH1-211ENST00000509638 MMACHCQ9Y4U1 282 aa27.84■■■□□ 2.05
LIMCH1-211ENST00000509638 PTPRQQ9UMZ3 2332 aa27.84■■■□□ 2.05
LIMCH1-211ENST00000509638 A0A087WV48 116 aa27.83■■■□□ 2.05
LIMCH1-211ENST00000509638 BLACEA4D250 179 aa27.83■■■□□ 2.05
LIMCH1-211ENST00000509638 EFSO43281 561 aa27.83■■■□□ 2.05
LIMCH1-211ENST00000509638 CYC1P08574 325 aa27.83■■■□□ 2.05
LIMCH1-211ENST00000509638 ITPKBP27987 946 aa27.83■■■□□ 2.05
LIMCH1-211ENST00000509638 LSP1P33241 339 aa27.83■■■□□ 2.05
LIMCH1-211ENST00000509638 ALDH9A1P49189 494 aa27.83■■■□□ 2.05
LIMCH1-211ENST00000509638 OR52E8Q6IFG1 317 aa27.83■■■□□ 2.05
LIMCH1-211ENST00000509638 TMEM132CQ8N3T6 1108 aa27.83■■■□□ 2.05
LIMCH1-211ENST00000509638 RFWD2Q8NHY2 731 aa27.83■■■□□ 2.05
LIMCH1-211ENST00000509638 ACTRT2Q8TDY3 377 aa27.83■■■□□ 2.05
LIMCH1-211ENST00000509638 UCN3Q969E3 161 aa27.83■■■□□ 2.05
LIMCH1-211ENST00000509638 PTCHD1Q96NR3 888 aa27.83■■■□□ 2.05
LIMCH1-211ENST00000509638 TSSK3Q96PN8 268 aa27.83■■■□□ 2.05
LIMCH1-211ENST00000509638 EBF4Q9BQW3 602 aa27.83■■■□□ 2.05
LIMCH1-211ENST00000509638 TRIM55Q9BYV6 548 aa27.83■■■□□ 2.05
LIMCH1-211ENST00000509638 DCTN4Q9UJW0 460 aa27.83■■■□□ 2.05
LIMCH1-211ENST00000509638 PCDHA9Q9Y5H5 950 aa27.83■■■□□ 2.05
LIMCH1-211ENST00000509638 CROCCQ5TZA2 2017 aa27.83■■■□□ 2.05
LIMCH1-211ENST00000509638 LDB3O75112 727 aa27.82■■■□□ 2.04
LIMCH1-211ENST00000509638 ALOX12BO75342 701 aa27.82■■■□□ 2.04
LIMCH1-211ENST00000509638 C8orf89P0DMQ9 161 aa27.82■■■□□ 2.04
LIMCH1-211ENST00000509638 TROVE2P10155 538 aaKnown RBP eCLIP27.82■■■□□ 2.04
LIMCH1-211ENST00000509638 MMP11P24347 488 aa27.82■■■□□ 2.04
LIMCH1-211ENST00000509638 IDH3AP50213 366 aa27.82■■■□□ 2.04
LIMCH1-211ENST00000509638 GNGT1P63211 74 aa27.82■■■□□ 2.04
LIMCH1-211ENST00000509638 SSPNQ14714 243 aa27.82■■■□□ 2.04
LIMCH1-211ENST00000509638 ATP1A1-AS1Q5TC04 95 aa27.82■■■□□ 2.04
LIMCH1-211ENST00000509638 OGFOD2Q6N063 350 aa27.82■■■□□ 2.04
LIMCH1-211ENST00000509638 CGB2Q6NT52 195 aa27.82■■■□□ 2.04
LIMCH1-211ENST00000509638 LANCL3Q6ZV70 420 aa27.82■■■□□ 2.04
LIMCH1-211ENST00000509638 ACAD11Q709F0 780 aa27.82■■■□□ 2.04
LIMCH1-211ENST00000509638 IKBIPQ70UQ0 350 aa27.82■■■□□ 2.04
LIMCH1-211ENST00000509638 PUM2Q8TB72 1066 aaKnown RBP eCLIP27.82■■■□□ 2.04
LIMCH1-211ENST00000509638 CHMP6Q96FZ7 201 aa27.82■■■□□ 2.04
LIMCH1-211ENST00000509638 EGLN2Q96KS0 407 aa27.82■■■□□ 2.04
LIMCH1-211ENST00000509638 MESP1Q9BRJ9 268 aa27.82■■■□□ 2.04
LIMCH1-211ENST00000509638 ASIC5Q9NY37 505 aa27.82■■■□□ 2.04
LIMCH1-211ENST00000509638 HEY2Q9UBP5 337 aa27.82■■■□□ 2.04
LIMCH1-211ENST00000509638 BAIAP2L1Q9UHR4 511 aa27.82■■■□□ 2.04
LIMCH1-211ENST00000509638 EIF3LQ9Y262 564 aaKnown RBP27.82■■■□□ 2.04
LIMCH1-211ENST00000509638 HS3ST3B1Q9Y662 390 aa27.82■■■□□ 2.04
LIMCH1-211ENST00000509638 PCSK5Q92824 1860 aa27.82■■■□□ 2.04
LIMCH1-211ENST00000509638 ZNF891A8MT65 544 aaPredicted RBP27.82■■■□□ 2.04
LIMCH1-211ENST00000509638 TGFBR3LH3BV60 316 aa27.82■■■□□ 2.04
LIMCH1-211ENST00000509638 PRKAR1AP10644 381 aa27.82■■■□□ 2.04
LIMCH1-211ENST00000509638 PTGR1Q14914 329 aa27.82■■■□□ 2.04
LIMCH1-211ENST00000509638 HEPACAMQ14CZ8 416 aa27.82■■■□□ 2.04
LIMCH1-211ENST00000509638 NSDHLQ15738 373 aa27.82■■■□□ 2.04
LIMCH1-211ENST00000509638 UGT8Q16880 541 aa27.82■■■□□ 2.04
LIMCH1-211ENST00000509638 CCDC81Q6ZN84 652 aa27.82■■■□□ 2.04
LIMCH1-211ENST00000509638 PPP1R32Q7Z5V6 425 aa27.82■■■□□ 2.04
LIMCH1-211ENST00000509638 METTL21AQ8WXB1 218 aa27.82■■■□□ 2.04
LIMCH1-211ENST00000509638 SIKE1Q9BRV8 207 aa27.82■■■□□ 2.04
LIMCH1-211ENST00000509638 TCF7L2Q9NQB0 619 aa27.82■■■□□ 2.04
LIMCH1-211ENST00000509638 NECTIN3Q9NQS3 549 aa27.82■■■□□ 2.04
LIMCH1-211ENST00000509638 C5AR2Q9P296 337 aa27.82■■■□□ 2.04
LIMCH1-211ENST00000509638 IGKV3D-11A0A0A0MRZ8 115 aa27.81■■■□□ 2.04
LIMCH1-211ENST00000509638 C1orf226A1L170 272 aa27.81■■■□□ 2.04
LIMCH1-211ENST00000509638 PGRMC2O15173 223 aa27.81■■■□□ 2.04
LIMCH1-211ENST00000509638 FGF17O60258 216 aa27.81■■■□□ 2.04
LIMCH1-211ENST00000509638 ALDOCP09972 364 aaKnown RBP27.81■■■□□ 2.04
LIMCH1-211ENST00000509638 DIO3P55073 304 aa27.81■■■□□ 2.04
LIMCH1-211ENST00000509638 MC1RQ01726 317 aa27.81■■■□□ 2.04
LIMCH1-211ENST00000509638 ID2Q02363 134 aa27.81■■■□□ 2.04
LIMCH1-211ENST00000509638 FAM71E1Q6IPT2 247 aa27.81■■■□□ 2.04
LIMCH1-211ENST00000509638 MRGPREQ86SM8 312 aa27.81■■■□□ 2.04
LIMCH1-211ENST00000509638 RAB43Q86YS6 212 aa27.81■■■□□ 2.04
LIMCH1-211ENST00000509638 ADAMTS17Q8TE56 1095 aa27.81■■■□□ 2.04
LIMCH1-211ENST00000509638 TANKQ92844 425 aa27.81■■■□□ 2.04
LIMCH1-211ENST00000509638 CLDN16Q9Y5I7 305 aa27.81■■■□□ 2.04
LIMCH1-211ENST00000509638 USP24Q9UPU5 2620 aa27.8■■■□□ 2.04
LIMCH1-211ENST00000509638 WASHC1A8K0Z3 465 aa27.8■■■□□ 2.04
LIMCH1-211ENST00000509638 NKX2-8O15522 239 aa27.8■■■□□ 2.04
LIMCH1-211ENST00000509638 CTNSO60931 367 aa27.8■■■□□ 2.04
LIMCH1-211ENST00000509638 IGHEP01854 428 aa27.8■■■□□ 2.04
LIMCH1-211ENST00000509638 G6PDP11413 515 aa27.8■■■□□ 2.04
LIMCH1-211ENST00000509638 PRPS2P11908 318 aa27.8■■■□□ 2.04
LIMCH1-211ENST00000509638 PPP2R1BP30154 601 aa27.8■■■□□ 2.04
LIMCH1-211ENST00000509638 FOLH1Q04609 750 aa27.8■■■□□ 2.04
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms