RNA–Protein interactions for RNA: ENST00000360019.7

CLN3-206, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,840 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-206ENST00000360019 WDR60Q8WVS4 1066 aa17.64■□□□□ 0.41
CLN3-206ENST00000360019 TMEM125Q96AQ2 219 aa17.64■□□□□ 0.41
CLN3-206ENST00000360019 CIDECQ96AQ7 238 aaPredicted RBP17.64■□□□□ 0.41
CLN3-206ENST00000360019 CCDC124Q96CT7 223 aaKnown RBP17.64■□□□□ 0.41
CLN3-206ENST00000360019 CGREF1Q99674 301 aa17.64■□□□□ 0.41
CLN3-206ENST00000360019 MAPKAP1Q9BPZ7 522 aa17.64■□□□□ 0.41
CLN3-206ENST00000360019 C5AR2Q9P296 337 aa17.64■□□□□ 0.41
CLN3-206ENST00000360019 PCDHGB2Q9Y5G2 931 aa17.64■□□□□ 0.41
CLN3-206ENST00000360019 PCDHA9Q9Y5H5 950 aa17.64■□□□□ 0.41
CLN3-206ENST00000360019 A0A096LPI6 279 aa17.63■□□□□ 0.41
CLN3-206ENST00000360019 PRSS51A0A1B0GVH4 220 aa17.63■□□□□ 0.41
CLN3-206ENST00000360019 A0A1W2PR48 441 aa17.63■□□□□ 0.41
CLN3-206ENST00000360019 PRORSD1PA6NEY8 169 aa17.63■□□□□ 0.41
CLN3-206ENST00000360019 A8MU76 341 aa17.63■□□□□ 0.41
CLN3-206ENST00000360019 TBX19O60806 448 aa17.63■□□□□ 0.41
CLN3-206ENST00000360019 DNAJB6O75190 326 aa17.63■□□□□ 0.41
CLN3-206ENST00000360019 PRKRAO75569 313 aaKnown RBP17.63■□□□□ 0.41
CLN3-206ENST00000360019 IL1RNP18510 177 aa17.63■□□□□ 0.41
CLN3-206ENST00000360019 ALDH9A1P49189 494 aa17.63■□□□□ 0.41
CLN3-206ENST00000360019 HSD11B2P80365 405 aa17.63■□□□□ 0.41
CLN3-206ENST00000360019 TCF15Q12870 199 aa17.63■□□□□ 0.41
CLN3-206ENST00000360019 TMEM71Q6P5X7 295 aa17.63■□□□□ 0.41
CLN3-206ENST00000360019 KLHL6Q8WZ60 621 aa17.63■□□□□ 0.41
CLN3-206ENST00000360019 SLC41A2Q96JW4 573 aa17.63■□□□□ 0.41
CLN3-206ENST00000360019 SERINC2Q96SA4 455 aa17.63■□□□□ 0.41
CLN3-206ENST00000360019 NLNQ9BYT8 704 aa17.63■□□□□ 0.41
CLN3-206ENST00000360019 ROGDIQ9GZN7 287 aa17.63■□□□□ 0.41
CLN3-206ENST00000360019 DENND2DQ9H6A0 471 aaPredicted RBP17.63■□□□□ 0.41
CLN3-206ENST00000360019 ATAD3AQ9NVI7 634 aa17.63■□□□□ 0.41
CLN3-206ENST00000360019 FBXW2Q9UKT8 454 aa17.63■□□□□ 0.41
CLN3-206ENST00000360019 PCDHB14Q9Y5E9 798 aa17.63■□□□□ 0.41
CLN3-206ENST00000360019 SLC22A7Q9Y694 548 aa17.63■□□□□ 0.41
CLN3-206ENST00000360019 RALGAPA1Q6GYQ0 2036 aa17.63■□□□□ 0.41
CLN3-206ENST00000360019 RNASET2O00584 256 aaKnown RBP17.63■□□□□ 0.41
CLN3-206ENST00000360019 RFXANKO14593 260 aa17.63■□□□□ 0.41
CLN3-206ENST00000360019 MAP3K7O43318 606 aa17.63■□□□□ 0.41
CLN3-206ENST00000360019 ERN1O75460 977 aaKnown RBP17.63■□□□□ 0.41
CLN3-206ENST00000360019 MED26O95402 600 aa17.63■□□□□ 0.41
CLN3-206ENST00000360019 CPNE6O95741 557 aa17.63■□□□□ 0.41
CLN3-206ENST00000360019 GSNP06396 782 aa17.63■□□□□ 0.41
CLN3-206ENST00000360019 ZNF806P0C7X5 589 aa17.63■□□□□ 0.41
CLN3-206ENST00000360019 GRK6P43250 576 aa17.63■□□□□ 0.41
CLN3-206ENST00000360019 ANXA8L1Q5VT79 327 aa17.63■□□□□ 0.41
CLN3-206ENST00000360019 FAM180BQ6P0A1 224 aa17.63■□□□□ 0.41
CLN3-206ENST00000360019 D2HGDHQ8N465 521 aa17.63■□□□□ 0.41
CLN3-206ENST00000360019 FAM47BQ8NA70 645 aa17.63■□□□□ 0.41
CLN3-206ENST00000360019 FAM156AQ8NDB6 213 aa17.63■□□□□ 0.41
CLN3-206ENST00000360019 PRSS33Q8NF86 280 aa17.63■□□□□ 0.41
CLN3-206ENST00000360019 DNAJB8Q8NHS0 232 aa17.63■□□□□ 0.41
CLN3-206ENST00000360019 CCDC115Q96NT0 180 aa17.63■□□□□ 0.41
CLN3-206ENST00000360019 ANKRD27Q96NW4 1050 aa17.63■□□□□ 0.41
CLN3-206ENST00000360019 LRRN3Q9H3W5 708 aa17.63■□□□□ 0.41
CLN3-206ENST00000360019 LYARQ9NX58 379 aaKnown RBP17.63■□□□□ 0.41
CLN3-206ENST00000360019 GMPR2Q9P2T1 348 aaKnown RBP17.63■□□□□ 0.41
CLN3-206ENST00000360019 CD300AQ9UGN4 299 aa17.63■□□□□ 0.41
CLN3-206ENST00000360019 BTNL2Q9UIR0 455 aa17.63■□□□□ 0.41
CLN3-206ENST00000360019 NUP214P35658 2090 aaPredicted RBP17.62■□□□□ 0.41
CLN3-206ENST00000360019 WDFY3Q8IZQ1 3526 aa17.62■□□□□ 0.41
CLN3-206ENST00000360019 ZNF860A6NHJ4 632 aa17.62■□□□□ 0.41
CLN3-206ENST00000360019 WASHC1A8K0Z3 465 aa17.62■□□□□ 0.41
CLN3-206ENST00000360019 TXNDC9O14530 226 aa17.62■□□□□ 0.41
CLN3-206ENST00000360019 CDX4O14627 284 aaPredicted RBP17.62■□□□□ 0.41
CLN3-206ENST00000360019 GALR3O60755 368 aaPredicted RBP17.62■□□□□ 0.41
CLN3-206ENST00000360019 AIFM1O95831 613 aa17.62■□□□□ 0.41
CLN3-206ENST00000360019 DRD2P14416 443 aa17.62■□□□□ 0.41
CLN3-206ENST00000360019 MSX2P35548 267 aaPredicted RBP17.62■□□□□ 0.41
CLN3-206ENST00000360019 MTPNP58546 118 aa17.62■□□□□ 0.41
CLN3-206ENST00000360019 RUNX2Q13950 521 aa17.62■□□□□ 0.41
CLN3-206ENST00000360019 SELPLGQ14242 412 aa17.62■□□□□ 0.41
CLN3-206ENST00000360019 C18orf63Q68DL7 685 aa17.62■□□□□ 0.41
CLN3-206ENST00000360019 SHISA5Q8N114 240 aa17.62■□□□□ 0.41
CLN3-206ENST00000360019 ZNF764Q96H86 408 aaPredicted RBP17.62■□□□□ 0.41
CLN3-206ENST00000360019 C10orf90Q96M02 699 aa17.62■□□□□ 0.41
CLN3-206ENST00000360019 PANX1Q96RD7 426 aa17.62■□□□□ 0.41
CLN3-206ENST00000360019 FAIM2Q9BWQ8 316 aa17.62■□□□□ 0.41
CLN3-206ENST00000360019 ZNF768Q9H5H4 540 aaKnown RBP17.62■□□□□ 0.41
CLN3-206ENST00000360019 RXFP3Q9NSD7 469 aa17.62■□□□□ 0.41
CLN3-206ENST00000360019 KCMF1Q9P0J7 381 aa17.62■□□□□ 0.41
CLN3-206ENST00000360019 POMPQ9Y244 141 aa17.62■□□□□ 0.41
CLN3-206ENST00000360019 NAALAD2Q9Y3Q0 740 aa17.62■□□□□ 0.41
CLN3-206ENST00000360019 OTOGLQ3ZCN5 2332 aa17.62■□□□□ 0.41
CLN3-206ENST00000360019 PROM1O43490 865 aa17.61■□□□□ 0.41
CLN3-206ENST00000360019 CPSF4O95639 269 aaKnown RBP17.61■□□□□ 0.41
CLN3-206ENST00000360019 TRPC1P48995 793 aa17.61■□□□□ 0.41
CLN3-206ENST00000360019 HNRNPFP52597 415 aaKnown RBP17.61■□□□□ 0.41
CLN3-206ENST00000360019 OLR1P78380 273 aa17.61■□□□□ 0.41
CLN3-206ENST00000360019 KPNB1Q14974 876 aaKnown RBP17.61■□□□□ 0.41
CLN3-206ENST00000360019 SAMD4BQ5PRF9 694 aaKnown RBP17.61■□□□□ 0.41
CLN3-206ENST00000360019 KMT5CQ86Y97 462 aa17.61■□□□□ 0.41
CLN3-206ENST00000360019 DTWD1Q8N5C7 304 aa17.61■□□□□ 0.41
CLN3-206ENST00000360019 VPS37AQ8NEZ2 397 aa17.61■□□□□ 0.41
CLN3-206ENST00000360019 AURKBQ96GD4 344 aaPredicted RBP17.61■□□□□ 0.41
CLN3-206ENST00000360019 LRFN3Q9BTN0 628 aa17.61■□□□□ 0.41
CLN3-206ENST00000360019 IKZF5Q9H5V7 419 aa17.61■□□□□ 0.41
CLN3-206ENST00000360019 SLAMF7Q9NQ25 335 aa17.61■□□□□ 0.41
CLN3-206ENST00000360019 ASCC3Q8N3C0 2202 aaKnown RBP17.61■□□□□ 0.41
CLN3-206ENST00000360019 C15orf38-AP3S2A0A0A6YYH1 394 aa17.61■□□□□ 0.41
CLN3-206ENST00000360019 GLOD5A6NK44 160 aa17.61■□□□□ 0.41
CLN3-206ENST00000360019 H3BMH7 237 aa17.61■□□□□ 0.41
CLN3-206ENST00000360019 TOX3O15405 576 aaPredicted RBP17.61■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms