RNA–Protein interactions for RNA: ENST00000231656.12

CDX1-201, Transcript of caudal type homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CDX1, Length 1,758 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-201ENST00000231656 CACNA1HO95180 2353 aa21.53■■□□□ 1.04
CDX1-201ENST00000231656 A0A1B0GTQ1 180 aa21.53■■□□□ 1.04
CDX1-201ENST00000231656 FAM221BA6H8Z2 402 aa21.53■■□□□ 1.04
CDX1-201ENST00000231656 PRR33A8MZF0 331 aa21.53■■□□□ 1.04
CDX1-201ENST00000231656 ISM1B1AKI9 464 aa21.53■■□□□ 1.04
CDX1-201ENST00000231656 UPK1AO00322 258 aa21.53■■□□□ 1.04
CDX1-201ENST00000231656 PRKD3O94806 890 aa21.53■■□□□ 1.04
CDX1-201ENST00000231656 GIMD1P0DJR0 217 aa21.53■■□□□ 1.04
CDX1-201ENST00000231656 TXNL4AP83876 142 aaKnown RBP21.53■■□□□ 1.04
CDX1-201ENST00000231656 GAB1Q13480 694 aa21.53■■□□□ 1.04
CDX1-201ENST00000231656 PTOV1Q86YD1 416 aa21.53■■□□□ 1.04
CDX1-201ENST00000231656 GOT1L1Q8NHS2 421 aaPredicted RBP21.53■■□□□ 1.04
CDX1-201ENST00000231656 SLC47A1Q96FL8 570 aa21.53■■□□□ 1.04
CDX1-201ENST00000231656 F2RL3Q96RI0 385 aa21.53■■□□□ 1.04
CDX1-201ENST00000231656 BDH2Q9BUT1 245 aa21.53■■□□□ 1.04
CDX1-201ENST00000231656 MAGIXQ9H6Y5 334 aa21.53■■□□□ 1.04
CDX1-201ENST00000231656 YY1AP1Q9H869 796 aa21.53■■□□□ 1.04
CDX1-201ENST00000231656 ATAD3AQ9NVI7 634 aa21.53■■□□□ 1.04
CDX1-201ENST00000231656 PCDH15Q96QU1 1955 aa21.52■■□□□ 1.04
CDX1-201ENST00000231656 OR6C74A6NCV1 312 aa21.52■■□□□ 1.04
CDX1-201ENST00000231656 DEAF1O75398 565 aaPredicted RBP21.52■■□□□ 1.04
CDX1-201ENST00000231656 SERPINA1P01009 418 aa21.52■■□□□ 1.04
CDX1-201ENST00000231656 EPHA8P29322 1005 aaPredicted RBP21.52■■□□□ 1.04
CDX1-201ENST00000231656 BSGP35613 385 aa21.52■■□□□ 1.04
CDX1-201ENST00000231656 PRSS53Q2L4Q9 553 aa21.52■■□□□ 1.04
CDX1-201ENST00000231656 MPEG1Q2M385 716 aa21.52■■□□□ 1.04
CDX1-201ENST00000231656 TRIM61Q5EBN2 209 aa21.52■■□□□ 1.04
CDX1-201ENST00000231656 C6orf132Q5T0Z8 1188 aa21.52■■□□□ 1.04
CDX1-201ENST00000231656 ZCCHC8Q6NZY4 707 aaKnown RBP21.52■■□□□ 1.04
CDX1-201ENST00000231656 SLC23A3Q6PIS1 610 aa21.52■■□□□ 1.04
CDX1-201ENST00000231656 CARM1Q86X55 608 aa21.52■■□□□ 1.04
CDX1-201ENST00000231656 FAM20CQ8IXL6 584 aa21.52■■□□□ 1.04
CDX1-201ENST00000231656 OR2L3Q8NG85 312 aa21.52■■□□□ 1.04
CDX1-201ENST00000231656 ZFP90Q8TF47 636 aa21.52■■□□□ 1.04
CDX1-201ENST00000231656 POP5Q969H6 163 aaKnown RBP21.52■■□□□ 1.04
CDX1-201ENST00000231656 SLC22A18Q96BI1 424 aa21.52■■□□□ 1.04
CDX1-201ENST00000231656 PPCDCQ96CD2 204 aa21.52■■□□□ 1.04
CDX1-201ENST00000231656 CHST8Q9H2A9 424 aa21.52■■□□□ 1.04
CDX1-201ENST00000231656 VPS4AQ9UN37 437 aa21.52■■□□□ 1.04
CDX1-201ENST00000231656 SLC6A14Q9UN76 642 aa21.52■■□□□ 1.04
CDX1-201ENST00000231656 VGLL3A8MV65 326 aa21.51■■□□□ 1.03
CDX1-201ENST00000231656 IL3P08700 152 aa21.51■■□□□ 1.03
CDX1-201ENST00000231656 NUBP1P53384 320 aa21.51■■□□□ 1.03
CDX1-201ENST00000231656 KIR2DS3Q14952 304 aa21.51■■□□□ 1.03
CDX1-201ENST00000231656 VMACQ2NL98 169 aa21.51■■□□□ 1.03
CDX1-201ENST00000231656 C14orf28Q4W4Y0 310 aa21.51■■□□□ 1.03
CDX1-201ENST00000231656 ERICH5Q6P6B1 374 aa21.51■■□□□ 1.03
CDX1-201ENST00000231656 KANSL1Q7Z3B3 1105 aa21.51■■□□□ 1.03
CDX1-201ENST00000231656 OR4A15Q8NGL6 344 aa21.51■■□□□ 1.03
CDX1-201ENST00000231656 OR10G6Q8NH81 332 aa21.51■■□□□ 1.03
CDX1-201ENST00000231656 VPS50Q96JG6 964 aa21.51■■□□□ 1.03
CDX1-201ENST00000231656 GAREM1Q9H706 876 aa21.51■■□□□ 1.03
CDX1-201ENST00000231656 IL21RQ9HBE5 538 aa21.51■■□□□ 1.03
CDX1-201ENST00000231656 MRPS30Q9NP92 439 aaKnown RBP21.51■■□□□ 1.03
CDX1-201ENST00000231656 ZNF282Q9UDV7 671 aaPredicted RBP21.51■■□□□ 1.03
CDX1-201ENST00000231656 R4GN57 208 aa21.51■■□□□ 1.03
CDX1-201ENST00000231656 LCMT2O60294 686 aaKnown RBP21.51■■□□□ 1.03
CDX1-201ENST00000231656 POLR2CP19387 275 aaPredicted RBP21.51■■□□□ 1.03
CDX1-201ENST00000231656 PPIBP23284 216 aaKnown RBP21.51■■□□□ 1.03
CDX1-201ENST00000231656 CLCN2P51788 898 aa21.51■■□□□ 1.03
CDX1-201ENST00000231656 ABATP80404 500 aa21.51■■□□□ 1.03
CDX1-201ENST00000231656 MYBPC1Q00872 1141 aa21.51■■□□□ 1.03
CDX1-201ENST00000231656 ADRM1Q16186 407 aa21.51■■□□□ 1.03
CDX1-201ENST00000231656 FLVCR1-AS1Q8TAF5 88 aa21.51■■□□□ 1.03
CDX1-201ENST00000231656 PNPT1Q8TCS8 783 aaKnown RBP21.51■■□□□ 1.03
CDX1-201ENST00000231656 TFAP2CQ92754 450 aa21.51■■□□□ 1.03
CDX1-201ENST00000231656 CIDECQ96AQ7 238 aaPredicted RBP21.51■■□□□ 1.03
CDX1-201ENST00000231656 SPATA9Q9BWV2 254 aa21.51■■□□□ 1.03
CDX1-201ENST00000231656 UTS2RQ9UKP6 389 aa21.51■■□□□ 1.03
CDX1-201ENST00000231656 RNF103-CHMP3A0A140T963 221 aa21.5■■□□□ 1.03
CDX1-201ENST00000231656 EI24O14681 340 aa21.5■■□□□ 1.03
CDX1-201ENST00000231656 OR1F1O43749 312 aa21.5■■□□□ 1.03
CDX1-201ENST00000231656 CCNDBP1O95273 360 aa21.5■■□□□ 1.03
CDX1-201ENST00000231656 ABCB1P08183 1280 aaPredicted RBP21.5■■□□□ 1.03
CDX1-201ENST00000231656 CMPK1P30085 196 aa21.5■■□□□ 1.03
CDX1-201ENST00000231656 HBA1P69905 142 aa21.5■■□□□ 1.03
CDX1-201ENST00000231656 BIRC2Q13490 618 aa21.5■■□□□ 1.03
CDX1-201ENST00000231656 CCNYL2Q5T2Q4 361 aa21.5■■□□□ 1.03
CDX1-201ENST00000231656 GATAD2AQ86YP4 633 aa21.5■■□□□ 1.03
CDX1-201ENST00000231656 SAP25Q8TEE9 199 aa21.5■■□□□ 1.03
CDX1-201ENST00000231656 LOXL4Q96JB6 756 aa21.5■■□□□ 1.03
CDX1-201ENST00000231656 OR2A14Q96R47 310 aa21.5■■□□□ 1.03
CDX1-201ENST00000231656 UCK1Q9HA47 277 aa21.5■■□□□ 1.03
CDX1-201ENST00000231656 SLC6A20Q9NP91 592 aa21.5■■□□□ 1.03
CDX1-201ENST00000231656 LHX9Q9NQ69 397 aa21.5■■□□□ 1.03
CDX1-201ENST00000231656 HRASLS2Q9NWW9 162 aa21.5■■□□□ 1.03
CDX1-201ENST00000231656 CORO2BQ9UQ03 480 aa21.5■■□□□ 1.03
CDX1-201ENST00000231656 GPR179Q6PRD1 2367 aa21.49■■□□□ 1.03
CDX1-201ENST00000231656 TRBC2A0A5B9 178 aa21.49■■□□□ 1.03
CDX1-201ENST00000231656 RTCAO00442 366 aaKnown RBP21.49■■□□□ 1.03
CDX1-201ENST00000231656 C6orf47O95873 294 aa21.49■■□□□ 1.03
CDX1-201ENST00000231656 KIAA1614Q5VZ46 1190 aa21.49■■□□□ 1.03
CDX1-201ENST00000231656 PLD3Q8IV08 490 aa21.49■■□□□ 1.03
CDX1-201ENST00000231656 ST13P4Q8IZP2 240 aaPredicted RBP21.49■■□□□ 1.03
CDX1-201ENST00000231656 MMP21Q8N119 569 aa21.49■■□□□ 1.03
CDX1-201ENST00000231656 EID3Q8N140 333 aa21.49■■□□□ 1.03
CDX1-201ENST00000231656 CLEC4FQ8N1N0 589 aa21.49■■□□□ 1.03
CDX1-201ENST00000231656 CREB3L4Q8TEY5 395 aa21.49■■□□□ 1.03
CDX1-201ENST00000231656 PYURFQ96I23 114 aa21.49■■□□□ 1.03
CDX1-201ENST00000231656 DPH7Q9BTV6 452 aa21.49■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 99.9 ms