RNA–Protein interactions for RNA: ENST00000602011.5

SHKBP1-227, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 897 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-227ENST00000602011 SCN3AQ9NY46 2000 aa16.66■□□□□ 0.26
SHKBP1-227ENST00000602011 ZFATQ9P243 1243 aa16.66■□□□□ 0.26
SHKBP1-227ENST00000602011 MRPS33Q9Y291 106 aaKnown RBP16.66■□□□□ 0.26
SHKBP1-227ENST00000602011 NCOA6Q14686 2063 aaPredicted RBP16.66■□□□□ 0.26
SHKBP1-227ENST00000602011 GTF3C1Q12789 2109 aa16.66■□□□□ 0.26
SHKBP1-227ENST00000602011 USP27XA6NNY8 438 aa16.65■□□□□ 0.26
SHKBP1-227ENST00000602011 FOXO6A8MYZ6 492 aa16.65■□□□□ 0.26
SHKBP1-227ENST00000602011 TFECO14948 347 aaPredicted RBP16.65■□□□□ 0.26
SHKBP1-227ENST00000602011 GUCA1CO95843 209 aa16.65■□□□□ 0.26
SHKBP1-227ENST00000602011 ITGA8P53708 1063 aa16.65■□□□□ 0.26
SHKBP1-227ENST00000602011 BTG2P78543 158 aa16.65■□□□□ 0.26
SHKBP1-227ENST00000602011 RBBP5Q15291 538 aaKnown RBP16.65■□□□□ 0.26
SHKBP1-227ENST00000602011 ZNF468Q5VIY5 522 aaPredicted RBP16.65■□□□□ 0.26
SHKBP1-227ENST00000602011 ARHGAP11AQ6P4F7 1023 aa16.65■□□□□ 0.26
SHKBP1-227ENST00000602011 RGS9BPQ6ZS82 235 aa16.65■□□□□ 0.26
SHKBP1-227ENST00000602011 SYDE1Q6ZW31 735 aaPredicted RBP16.65■□□□□ 0.26
SHKBP1-227ENST00000602011 KIF2BQ8N4N8 673 aa16.65■□□□□ 0.26
SHKBP1-227ENST00000602011 CPSF7Q8N684 471 aaKnown RBP16.65■□□□□ 0.26
SHKBP1-227ENST00000602011 ZFP62Q8NB50 900 aaPredicted RBP16.65■□□□□ 0.26
SHKBP1-227ENST00000602011 VMP1Q96GC9 406 aa16.65■□□□□ 0.26
SHKBP1-227ENST00000602011 TREX2Q9BQ50 279 aaPredicted RBP16.65■□□□□ 0.26
SHKBP1-227ENST00000602011 NT5DC2Q9H857 520 aa16.65■□□□□ 0.26
SHKBP1-227ENST00000602011 TIMMDC1Q9NPL8 285 aa16.65■□□□□ 0.26
SHKBP1-227ENST00000602011 ASIC3Q9UHC3 531 aa16.65■□□□□ 0.26
SHKBP1-227ENST00000602011 PPT2Q9UMR5 302 aa16.65■□□□□ 0.26
SHKBP1-227ENST00000602011 YARS2Q9Y2Z4 477 aaKnown RBP16.65■□□□□ 0.26
SHKBP1-227ENST00000602011 MTORP42345 2549 aa16.65■□□□□ 0.26
SHKBP1-227ENST00000602011 CACNA1CQ13936 2221 aa16.64■□□□□ 0.25
SHKBP1-227ENST00000602011 ZFAND5O76080 213 aa16.64■□□□□ 0.25
SHKBP1-227ENST00000602011 TFEBP19484 476 aa16.64■□□□□ 0.25
SHKBP1-227ENST00000602011 KIR3DL1P43629 444 aa16.64■□□□□ 0.25
SHKBP1-227ENST00000602011 RAB8AP61006 207 aa16.64■□□□□ 0.25
SHKBP1-227ENST00000602011 OLR1P78380 273 aa16.64■□□□□ 0.25
SHKBP1-227ENST00000602011 CCZ1BP86790 482 aa16.64■□□□□ 0.25
SHKBP1-227ENST00000602011 CCZ1P86791 482 aaPredicted RBP16.64■□□□□ 0.25
SHKBP1-227ENST00000602011 MORF4L2Q15014 288 aa16.64■□□□□ 0.25
SHKBP1-227ENST00000602011 SBSNQ6UWP8 590 aa16.64■□□□□ 0.25
SHKBP1-227ENST00000602011 ZNF227Q86WZ6 799 aa16.64■□□□□ 0.25
SHKBP1-227ENST00000602011 SULF2Q8IWU5 870 aa16.64■□□□□ 0.25
SHKBP1-227ENST00000602011 CHERPQ8IWX8 916 aaKnown RBP16.64■□□□□ 0.25
SHKBP1-227ENST00000602011 ANKRD53Q8N9V6 530 aa16.64■□□□□ 0.25
SHKBP1-227ENST00000602011 APCDD1LQ8NCL9 501 aa16.64■□□□□ 0.25
SHKBP1-227ENST00000602011 GAL3ST3Q96A11 431 aa16.64■□□□□ 0.25
SHKBP1-227ENST00000602011 VPS39Q96JC1 886 aa16.64■□□□□ 0.25
SHKBP1-227ENST00000602011 RUNDC3BQ96NL0 473 aa16.64■□□□□ 0.25
SHKBP1-227ENST00000602011 OSBPL9Q96SU4 736 aa16.64■□□□□ 0.25
SHKBP1-227ENST00000602011 MCCC2Q9HCC0 563 aa16.64■□□□□ 0.25
SHKBP1-227ENST00000602011 RYDENQ9NUL5 291 aaKnown RBP16.64■□□□□ 0.25
SHKBP1-227ENST00000602011 SLC22A14Q9Y267 594 aa16.64■□□□□ 0.25
SHKBP1-227ENST00000602011 ADAM10O14672 748 aa16.63■□□□□ 0.25
SHKBP1-227ENST00000602011 PEX1O43933 1283 aa16.63■□□□□ 0.25
SHKBP1-227ENST00000602011 DNAJB6O75190 326 aa16.63■□□□□ 0.25
SHKBP1-227ENST00000602011 MAOAP21397 527 aa16.63■□□□□ 0.25
SHKBP1-227ENST00000602011 MEOX1P50221 254 aa16.63■□□□□ 0.25
SHKBP1-227ENST00000602011 HYAL2Q12891 473 aa16.63■□□□□ 0.25
SHKBP1-227ENST00000602011 PPP1R3AQ16821 1122 aa16.63■□□□□ 0.25
SHKBP1-227ENST00000602011 KCTD19Q17RG1 926 aaPredicted RBP16.63■□□□□ 0.25
SHKBP1-227ENST00000602011 RNFT1Q5M7Z0 435 aa16.63■□□□□ 0.25
SHKBP1-227ENST00000602011 ADAMTSL2Q86TH1 951 aa16.63■□□□□ 0.25
SHKBP1-227ENST00000602011 ZNF595Q8IYB9 648 aa16.63■□□□□ 0.25
SHKBP1-227ENST00000602011 KLHDC8AQ8IYD2 350 aa16.63■□□□□ 0.25
SHKBP1-227ENST00000602011 CYP4Z2PQ8N1L4 340 aa16.63■□□□□ 0.25
SHKBP1-227ENST00000602011 KRT78Q8N1N4 520 aa16.63■□□□□ 0.25
SHKBP1-227ENST00000602011 CA13Q8N1Q1 262 aa16.63■□□□□ 0.25
SHKBP1-227ENST00000602011 TMEM132CQ8N3T6 1108 aa16.63■□□□□ 0.25
SHKBP1-227ENST00000602011 CREB3L4Q8TEY5 395 aa16.63■□□□□ 0.25
SHKBP1-227ENST00000602011 SDCCAG3Q96C92 435 aa16.63■□□□□ 0.25
SHKBP1-227ENST00000602011 TP63Q9H3D4 680 aaPredicted RBP16.63■□□□□ 0.25
SHKBP1-227ENST00000602011 NECTIN3Q9NQS3 549 aa16.63■□□□□ 0.25
SHKBP1-227ENST00000602011 NSMCE4AQ9NXX6 385 aa16.63■□□□□ 0.25
SHKBP1-227ENST00000602011 NF1P21359 2839 aa16.63■□□□□ 0.25
SHKBP1-227ENST00000602011 ITGA10O75578 1167 aa16.62■□□□□ 0.25
SHKBP1-227ENST00000602011 TUBB4AP04350 444 aa16.62■□□□□ 0.25
SHKBP1-227ENST00000602011 C1GALT1C1LP0DN25 315 aa16.62■□□□□ 0.25
SHKBP1-227ENST00000602011 ZNF37AP17032 561 aaPredicted RBP16.62■□□□□ 0.25
SHKBP1-227ENST00000602011 HNF4AP41235 474 aa16.62■□□□□ 0.25
SHKBP1-227ENST00000602011 SSR4P51571 173 aa16.62■□□□□ 0.25
SHKBP1-227ENST00000602011 EFTUD2Q15029 972 aaKnown RBP eCLIP16.62■□□□□ 0.25
SHKBP1-227ENST00000602011 CDKL4Q5MAI5 379 aa16.62■□□□□ 0.25
SHKBP1-227ENST00000602011 TMIGD1Q6UXZ0 262 aa16.62■□□□□ 0.25
SHKBP1-227ENST00000602011 SPNS3Q6ZMD2 512 aa16.62■□□□□ 0.25
SHKBP1-227ENST00000602011 ACAD11Q709F0 780 aa16.62■□□□□ 0.25
SHKBP1-227ENST00000602011 TMPRSS11BQ86T26 416 aa16.62■□□□□ 0.25
SHKBP1-227ENST00000602011 SCUBE1Q8IWY4 988 aa16.62■□□□□ 0.25
SHKBP1-227ENST00000602011 TCAIMQ8N3R3 496 aa16.62■□□□□ 0.25
SHKBP1-227ENST00000602011 LILRB4Q8NHJ6 448 aa16.62■□□□□ 0.25
SHKBP1-227ENST00000602011 TSNARE1Q96NA8 513 aa16.62■□□□□ 0.25
SHKBP1-227ENST00000602011 EGFL8Q99944 293 aa16.62■□□□□ 0.25
SHKBP1-227ENST00000602011 RHBGQ9H310 441 aa16.62■□□□□ 0.25
SHKBP1-227ENST00000602011 POPDC3Q9HBV1 291 aa16.62■□□□□ 0.25
SHKBP1-227ENST00000602011 PLSCR2Q9NRY7 297 aa16.62■□□□□ 0.25
SHKBP1-227ENST00000602011 GPRC5BQ9NZH0 403 aa16.62■□□□□ 0.25
SHKBP1-227ENST00000602011 FBXW2Q9UKT8 454 aa16.62■□□□□ 0.25
SHKBP1-227ENST00000602011 OARD1Q9Y530 152 aa16.62■□□□□ 0.25
SHKBP1-227ENST00000602011 ITPR3Q14573 2671 aa16.61■□□□□ 0.25
SHKBP1-227ENST00000602011 TRBV11-1A0A0K0K1C0 115 aa16.61■□□□□ 0.25
SHKBP1-227ENST00000602011 A0A1B0GTH9 108 aa16.61■□□□□ 0.25
SHKBP1-227ENST00000602011 LRIT2A6NDA9 550 aa16.61■□□□□ 0.25
SHKBP1-227ENST00000602011 B3GALT2O43825 422 aa16.61■□□□□ 0.25
SHKBP1-227ENST00000602011 CLEC3AO75596 197 aa16.61■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 63.1 ms