RNA–Protein interactions for RNA: ENST00000556413.1

SCFD1-219, Transcript of sec1 family domain containing 1, humanhuman

TSL 3

Gene SCFD1, Length 512 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-219ENST00000556413 LOC102723996A0A087X1L8 192 aa2.73□□□□□ -1.97
SCFD1-219ENST00000556413 ANKUB1A6NFN9 424 aa2.73□□□□□ -1.97
SCFD1-219ENST00000556413 MPHOSPH10O00566 681 aaKnown RBP2.73□□□□□ -1.97
SCFD1-219ENST00000556413 CXCL11O14625 94 aa2.73□□□□□ -1.97
SCFD1-219ENST00000556413 PHF1O43189 567 aaPredicted RBP2.73□□□□□ -1.97
SCFD1-219ENST00000556413 PRKAB2O43741 272 aa2.73□□□□□ -1.97
SCFD1-219ENST00000556413 PRAMEF11O60813 436 aa2.73□□□□□ -1.97
SCFD1-219ENST00000556413 ENTPD3O75355 529 aa2.73□□□□□ -1.97
SCFD1-219ENST00000556413 IDH1O75874 414 aaKnown RBP2.73□□□□□ -1.97
SCFD1-219ENST00000556413 PGK1P00558 417 aa2.73□□□□□ -1.97
SCFD1-219ENST00000556413 PGK2P07205 417 aa2.73□□□□□ -1.97
SCFD1-219ENST00000556413 OR2T7P0C7T2 308 aa2.73□□□□□ -1.97
SCFD1-219ENST00000556413 VPREB1P12018 145 aa2.73□□□□□ -1.97
SCFD1-219ENST00000556413 FOSL2P15408 326 aa2.73□□□□□ -1.97
SCFD1-219ENST00000556413 RPL35AP18077 110 aaKnown RBP2.73□□□□□ -1.97
SCFD1-219ENST00000556413 KLK2P20151 261 aa2.73□□□□□ -1.97
SCFD1-219ENST00000556413 SOX3P41225 446 aa2.73□□□□□ -1.97
SCFD1-219ENST00000556413 NRIP1P48552 1158 aa2.73□□□□□ -1.97
SCFD1-219ENST00000556413 PRMT2P55345 433 aa2.73□□□□□ -1.97
SCFD1-219ENST00000556413 IRX4P78413 519 aa2.73□□□□□ -1.97
SCFD1-219ENST00000556413 CDH18Q13634 790 aa2.73□□□□□ -1.97
SCFD1-219ENST00000556413 TAB1Q15750 504 aa2.73□□□□□ -1.97
SCFD1-219ENST00000556413 MEA1Q16626 185 aa2.73□□□□□ -1.97
SCFD1-219ENST00000556413 PLEKHS1Q5SXH7 462 aa2.73□□□□□ -1.97
SCFD1-219ENST00000556413 FHL5Q5TD97 284 aa2.73□□□□□ -1.97
SCFD1-219ENST00000556413 DMKNQ6E0U4 476 aaPredicted RBP2.73□□□□□ -1.97
SCFD1-219ENST00000556413 LCLAT1Q6UWP7 414 aa2.73□□□□□ -1.97
SCFD1-219ENST00000556413 C4orf50Q6ZRC1 276 aa2.73□□□□□ -1.97
SCFD1-219ENST00000556413 PHC2Q8IXK0 858 aa2.73□□□□□ -1.97
SCFD1-219ENST00000556413 ZBED8Q8IZ13 594 aa2.73□□□□□ -1.97
SCFD1-219ENST00000556413 KLHDC1Q8N7A1 406 aa2.73□□□□□ -1.97
SCFD1-219ENST00000556413 POC5Q8NA72 575 aa2.73□□□□□ -1.97
SCFD1-219ENST00000556413 FRAT1Q92837 279 aaPredicted RBP2.73□□□□□ -1.97
SCFD1-219ENST00000556413 NSUN4Q96CB9 384 aaKnown RBP2.73□□□□□ -1.97
SCFD1-219ENST00000556413 IDI2Q9BXS1 227 aa2.73□□□□□ -1.97
SCFD1-219ENST00000556413 RPAP3Q9H6T3 665 aaPredicted RBP2.73□□□□□ -1.97
SCFD1-219ENST00000556413 ZCCHC17Q9NP64 241 aaKnown RBP2.73□□□□□ -1.97
SCFD1-219ENST00000556413 TNFRSF19Q9NS68 423 aa2.73□□□□□ -1.97
SCFD1-219ENST00000556413 STAU2Q9NUL3 570 aaKnown RBP eCLIP2.73□□□□□ -1.97
SCFD1-219ENST00000556413 ANAPC11Q9NYG5 84 aa2.73□□□□□ -1.97
SCFD1-219ENST00000556413 NYAP2Q9P242 653 aa2.73□□□□□ -1.97
SCFD1-219ENST00000556413 ADD3Q9UEY8 706 aaKnown RBP2.73□□□□□ -1.97
SCFD1-219ENST00000556413 C19orf25Q9UFG5 118 aaPredicted RBP2.73□□□□□ -1.97
SCFD1-219ENST00000556413 VSIG4Q9Y279 399 aa2.73□□□□□ -1.97
SCFD1-219ENST00000556413 ZNF256Q9Y2P7 627 aaPredicted RBP2.73□□□□□ -1.97
SCFD1-219ENST00000556413 DOCK1Q14185 1865 aa2.73□□□□□ -1.97
SCFD1-219ENST00000556413 SIPA1L1O43166 1804 aa2.72□□□□□ -1.97
SCFD1-219ENST00000556413 DNAH12Q6ZR08 3092 aa2.72□□□□□ -1.97
SCFD1-219ENST00000556413 GPR75-ASB3A0A0A6YYF3 556 aa2.72□□□□□ -1.97
SCFD1-219ENST00000556413 hCG_1807616A0A1W2PRN6 198 aa2.72□□□□□ -1.97
SCFD1-219ENST00000556413 SNURFLB1AK76 121 aa2.72□□□□□ -1.97
SCFD1-219ENST00000556413 CEP290O15078 2479 aa2.72□□□□□ -1.97
SCFD1-219ENST00000556413 BCL10O95999 233 aa2.72□□□□□ -1.97
SCFD1-219ENST00000556413 PRB2P02812 416 aaPredicted RBP2.72□□□□□ -1.97
SCFD1-219ENST00000556413 MYOGP15173 224 aa2.72□□□□□ -1.97
SCFD1-219ENST00000556413 PTPN3P26045 913 aa2.72□□□□□ -1.97
SCFD1-219ENST00000556413 SLC9A3P48764 834 aa2.72□□□□□ -1.97
SCFD1-219ENST00000556413 BACE1P56817 501 aa2.72□□□□□ -1.97
SCFD1-219ENST00000556413 SNAP25P60880 206 aa2.72□□□□□ -1.97
SCFD1-219ENST00000556413 PCLAFQ15004 111 aa2.72□□□□□ -1.97
SCFD1-219ENST00000556413 FAM189A2Q15884 450 aa2.72□□□□□ -1.97
SCFD1-219ENST00000556413 EXT1Q16394 746 aa2.72□□□□□ -1.97
SCFD1-219ENST00000556413 CA9Q16790 459 aa2.72□□□□□ -1.97
SCFD1-219ENST00000556413 PRR30Q53SZ7 412 aaPredicted RBP2.72□□□□□ -1.97
SCFD1-219ENST00000556413 IGSF11Q5DX21 431 aa2.72□□□□□ -1.97
SCFD1-219ENST00000556413 FKBP1CQ5VVH2 108 aa2.72□□□□□ -1.97
SCFD1-219ENST00000556413 KRT79Q5XKE5 535 aa2.72□□□□□ -1.97
SCFD1-219ENST00000556413 NAA16Q6N069 864 aaPredicted RBP2.72□□□□□ -1.97
SCFD1-219ENST00000556413 C1orf131Q8NDD1 294 aaKnown RBP2.72□□□□□ -1.97
SCFD1-219ENST00000556413 PTPMT1Q8WUK0 201 aaPredicted RBP2.72□□□□□ -1.97
SCFD1-219ENST00000556413 SDR42E1Q8WUS8 393 aa2.72□□□□□ -1.97
SCFD1-219ENST00000556413 PSMB7Q99436 277 aa2.72□□□□□ -1.97
SCFD1-219ENST00000556413 LPAR4Q99677 370 aa2.72□□□□□ -1.97
SCFD1-219ENST00000556413 SDF4Q9BRK5 362 aa2.72□□□□□ -1.97
SCFD1-219ENST00000556413 MAK16Q9BXY0 300 aaKnown RBP2.72□□□□□ -1.97
SCFD1-219ENST00000556413 CHMP4AQ9BY43 222 aa2.72□□□□□ -1.97
SCFD1-219ENST00000556413 TBC1D17Q9HA65 648 aa2.72□□□□□ -1.97
SCFD1-219ENST00000556413 TRPV4Q9HBA0 871 aa2.72□□□□□ -1.97
SCFD1-219ENST00000556413 IL1RAPL2Q9NP60 686 aa2.72□□□□□ -1.97
SCFD1-219ENST00000556413 GKN1Q9NS71 199 aa2.72□□□□□ -1.97
SCFD1-219ENST00000556413 TBC1D22BQ9NU19 505 aa2.72□□□□□ -1.97
SCFD1-219ENST00000556413 GTSE1Q9NYZ3 720 aa2.72□□□□□ -1.97
SCFD1-219ENST00000556413 MORF4L1Q9UBU8 362 aa2.72□□□□□ -1.97
SCFD1-219ENST00000556413 VPS28Q9UK41 221 aa2.72□□□□□ -1.97
SCFD1-219ENST00000556413 ISY1Q9ULR0 285 aaKnown RBP2.72□□□□□ -1.97
SCFD1-219ENST00000556413 EXOC6BQ9Y2D4 811 aa2.72□□□□□ -1.97
SCFD1-219ENST00000556413 WBP11Q9Y2W2 641 aaKnown RBP2.72□□□□□ -1.97
SCFD1-219ENST00000556413 LAMB1P07942 1786 aa2.72□□□□□ -1.97
SCFD1-219ENST00000556413 UMODL1Q5DID0 1318 aa2.71□□□□□ -1.98
SCFD1-219ENST00000556413 SALL1Q9NSC2 1324 aa2.71□□□□□ -1.98
SCFD1-219ENST00000556413 PLXNB2O15031 1838 aa2.71□□□□□ -1.98
SCFD1-219ENST00000556413 TMEM221A6NGB7 291 aa2.71□□□□□ -1.98
SCFD1-219ENST00000556413 EPOPA6NHQ4 379 aa2.71□□□□□ -1.98
SCFD1-219ENST00000556413 KBTBD13C9JR72 458 aa2.71□□□□□ -1.98
SCFD1-219ENST00000556413 G3V2L1 256 aa2.71□□□□□ -1.98
SCFD1-219ENST00000556413 FPGTO14772 594 aa2.71□□□□□ -1.98
SCFD1-219ENST00000556413 TEX28O15482 410 aa2.71□□□□□ -1.98
SCFD1-219ENST00000556413 TSPAN1O60635 241 aa2.71□□□□□ -1.98
SCFD1-219ENST00000556413 CIAO1O76071 339 aa2.71□□□□□ -1.98
SCFD1-219ENST00000556413 SLCO2B1O94956 709 aa2.71□□□□□ -1.98
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms