RNA–Protein interactions for RNA: ENST00000543627.1

DDB1-222, Transcript of damage specific DNA binding protein 1, human

TSL 5

Gene DDB1, Length 540 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDB1-222	ENST00000543627	LANCL3	Q6ZV70	420 aa		10.44	□□□□□ -0.74
DDB1-222	ENST00000543627	RPS27L	Q71UM5	84 aa	Known RBP	10.44	□□□□□ -0.74
DDB1-222	ENST00000543627	RNF175	Q8N4F7	328 aa		10.44	□□□□□ -0.74
DDB1-222	ENST00000543627	CCDC63	Q8NA47	563 aa		10.44	□□□□□ -0.74
DDB1-222	ENST00000543627	OR11G2	Q8NGC1	345 aa		10.44	□□□□□ -0.74
DDB1-222	ENST00000543627	OR2W6P	Q8NHA6	318 aa		10.44	□□□□□ -0.74
DDB1-222	ENST00000543627	EPS8L3	Q8TE67	593 aa	Known RBP	10.44	□□□□□ -0.74
DDB1-222	ENST00000543627	CREB3L4	Q8TEY5	395 aa		10.44	□□□□□ -0.74
DDB1-222	ENST00000543627	MRPL57	Q9BQC6	102 aa	Known RBP	10.44	□□□□□ -0.74
DDB1-222	ENST00000543627	SARG	Q9BW04	601 aa		10.44	□□□□□ -0.74
DDB1-222	ENST00000543627	SLC6A16	Q9GZN6	736 aa		10.44	□□□□□ -0.74
DDB1-222	ENST00000543627	VN1R1	Q9GZP7	353 aa		10.44	□□□□□ -0.74
DDB1-222	ENST00000543627	REXO4	Q9GZR2	422 aa	Known RBP	10.44	□□□□□ -0.74
DDB1-222	ENST00000543627	MRPL46	Q9H2W6	279 aa	Known RBP	10.44	□□□□□ -0.74
DDB1-222	ENST00000543627	EPB41L4B	Q9H329	900 aa		10.44	□□□□□ -0.74
DDB1-222	ENST00000543627	SEMA4B	Q9NPR2	832 aa	Predicted RBP	10.44	□□□□□ -0.74
DDB1-222	ENST00000543627	TMEM216	Q9P0N5	145 aa		10.44	□□□□□ -0.74
DDB1-222	ENST00000543627	ZNF451	Q9Y4E5	1061 aa		10.44	□□□□□ -0.74
DDB1-222	ENST00000543627	SCN2A	Q99250	2005 aa		10.44	□□□□□ -0.74
DDB1-222	ENST00000543627	TNRC6A	Q8NDV7	1962 aa	Known RBP	10.44	□□□□□ -0.74
DDB1-222	ENST00000543627	SMG1	Q96Q15	3661 aa	Known RBP	10.44	□□□□□ -0.74
DDB1-222	ENST00000543627	IGLV3-12	A0A075B6K2	115 aa		10.43	□□□□□ -0.74
DDB1-222	ENST00000543627	MYOCOS	A0A1B0GUC4	107 aa		10.43	□□□□□ -0.74
DDB1-222	ENST00000543627	LRIT2	A6NDA9	550 aa		10.43	□□□□□ -0.74
DDB1-222	ENST00000543627		A8MUI8	341 aa		10.43	□□□□□ -0.74
DDB1-222	ENST00000543627	RTCA	O00442	366 aa	Known RBP	10.43	□□□□□ -0.74
DDB1-222	ENST00000543627	B3GALT2	O43825	422 aa		10.43	□□□□□ -0.74
DDB1-222	ENST00000543627	CLEC3A	O75596	197 aa		10.43	□□□□□ -0.74
DDB1-222	ENST00000543627	WFS1	O76024	890 aa		10.43	□□□□□ -0.74
DDB1-222	ENST00000543627	SEC24D	O94855	1032 aa	Predicted RBP	10.43	□□□□□ -0.74
DDB1-222	ENST00000543627	FH	P07954	510 aa		10.43	□□□□□ -0.74
DDB1-222	ENST00000543627	TNFRSF8	P28908	595 aa		10.43	□□□□□ -0.74
DDB1-222	ENST00000543627	HSD17B3	P37058	310 aa		10.43	□□□□□ -0.74
DDB1-222	ENST00000543627	MAGEA12	P43365	314 aa		10.43	□□□□□ -0.74
DDB1-222	ENST00000543627	CSRP3	P50461	194 aa		10.43	□□□□□ -0.74
DDB1-222	ENST00000543627	CCNG1	P51959	295 aa		10.43	□□□□□ -0.74
DDB1-222	ENST00000543627	RAP1GDS1	P52306	607 aa		10.43	□□□□□ -0.74
DDB1-222	ENST00000543627	CDH13	P55290	713 aa		10.43	□□□□□ -0.74
DDB1-222	ENST00000543627	TGM3	Q08188	693 aa		10.43	□□□□□ -0.74
DDB1-222	ENST00000543627	HYAL2	Q12891	473 aa		10.43	□□□□□ -0.74
DDB1-222	ENST00000543627	KLRB1	Q12918	225 aa		10.43	□□□□□ -0.74
DDB1-222	ENST00000543627	NSDHL	Q15738	373 aa		10.43	□□□□□ -0.74
DDB1-222	ENST00000543627	NADK2	Q4G0N4	442 aa		10.43	□□□□□ -0.74
DDB1-222	ENST00000543627	SGO1	Q5FBB7	561 aa		10.43	□□□□□ -0.74
DDB1-222	ENST00000543627	ATG14	Q6ZNE5	492 aa		10.43	□□□□□ -0.74
DDB1-222	ENST00000543627	TIFAB	Q6ZNK6	161 aa		10.43	□□□□□ -0.74
DDB1-222	ENST00000543627	LINC00696	Q6ZRV3	163 aa		10.43	□□□□□ -0.74
DDB1-222	ENST00000543627	NDUFAF7	Q7L592	441 aa		10.43	□□□□□ -0.74
DDB1-222	ENST00000543627	SIRT6	Q8N6T7	355 aa		10.43	□□□□□ -0.74
DDB1-222	ENST00000543627	EIF1AD	Q8N9N8	165 aa	Known RBP	10.43	□□□□□ -0.74
DDB1-222	ENST00000543627	UBE2E3	Q969T4	207 aa		10.43	□□□□□ -0.74
DDB1-222	ENST00000543627	GAL3ST3	Q96A11	431 aa		10.43	□□□□□ -0.74
DDB1-222	ENST00000543627	TBC1D20	Q96BZ9	403 aa		10.43	□□□□□ -0.74
DDB1-222	ENST00000543627	MS4A6E	Q96DS6	147 aa		10.43	□□□□□ -0.74
DDB1-222	ENST00000543627	PTCHD1	Q96NR3	888 aa		10.43	□□□□□ -0.74
DDB1-222	ENST00000543627	NSUN5	Q96P11	429 aa	Known RBP	10.43	□□□□□ -0.74
DDB1-222	ENST00000543627	MTERF1	Q99551	399 aa	Known RBP	10.43	□□□□□ -0.74
DDB1-222	ENST00000543627	TGIF2	Q9GZN2	237 aa		10.43	□□□□□ -0.74
DDB1-222	ENST00000543627	OR51B5	Q9H339	312 aa		10.43	□□□□□ -0.74
DDB1-222	ENST00000543627	EHD1	Q9H4M9	534 aa		10.43	□□□□□ -0.74
DDB1-222	ENST00000543627	NT5DC2	Q9H857	520 aa		10.43	□□□□□ -0.74
DDB1-222	ENST00000543627	PTGFRN	Q9P2B2	879 aa		10.43	□□□□□ -0.74
DDB1-222	ENST00000543627	RNF11	Q9Y3C5	154 aa		10.43	□□□□□ -0.74
DDB1-222	ENST00000543627	MED13	Q9UHV7	2174 aa		10.43	□□□□□ -0.74
DDB1-222	ENST00000543627	PCSK5	Q92824	1860 aa		10.42	□□□□□ -0.74
DDB1-222	ENST00000543627		A0A088AWK7	358 aa		10.42	□□□□□ -0.74
DDB1-222	ENST00000543627	TTLL8	A6PVC2	850 aa		10.42	□□□□□ -0.74
DDB1-222	ENST00000543627	C4orf51	C9J302	202 aa		10.42	□□□□□ -0.74
DDB1-222	ENST00000543627	PRMT3	O60678	531 aa		10.42	□□□□□ -0.74
DDB1-222	ENST00000543627	SUPT7L	O94864	414 aa		10.42	□□□□□ -0.74
DDB1-222	ENST00000543627	CLDN9	O95484	217 aa		10.42	□□□□□ -0.74
DDB1-222	ENST00000543627	HP	P00738	406 aa		10.42	□□□□□ -0.74
DDB1-222	ENST00000543627	ALPP	P05187	535 aa		10.42	□□□□□ -0.74
DDB1-222	ENST00000543627	CELA2A	P08217	269 aa		10.42	□□□□□ -0.74
DDB1-222	ENST00000543627	COX6A1	P12074	109 aa		10.42	□□□□□ -0.74
DDB1-222	ENST00000543627	RNH1	P13489	461 aa	Known RBP	10.42	□□□□□ -0.74
DDB1-222	ENST00000543627	ZNF10	P21506	573 aa	Predicted RBP	10.42	□□□□□ -0.74
DDB1-222	ENST00000543627	JAK1	P23458	1154 aa		10.42	□□□□□ -0.74
DDB1-222	ENST00000543627	CERS1	P27544	350 aa		10.42	□□□□□ -0.74
DDB1-222	ENST00000543627	HPD	P32754	393 aa	Predicted RBP	10.42	□□□□□ -0.74
DDB1-222	ENST00000543627	NEK2	P51955	445 aa		10.42	□□□□□ -0.74
DDB1-222	ENST00000543627	OR4D2	P58180	307 aa		10.42	□□□□□ -0.74
DDB1-222	ENST00000543627	BTG2	P78543	158 aa		10.42	□□□□□ -0.74
DDB1-222	ENST00000543627	PHEX	P78562	749 aa		10.42	□□□□□ -0.74
DDB1-222	ENST00000543627	RUNX2	Q13950	521 aa		10.42	□□□□□ -0.74
DDB1-222	ENST00000543627	NAA30	Q147X3	362 aa	Predicted RBP	10.42	□□□□□ -0.74
DDB1-222	ENST00000543627	MYBPC3	Q14896	1274 aa		10.42	□□□□□ -0.74
DDB1-222	ENST00000543627	ABRAXAS2	Q15018	415 aa		10.42	□□□□□ -0.74
DDB1-222	ENST00000543627	PCBP2	Q15366	365 aa	Known RBP eCLIP	10.42	□□□□□ -0.74
DDB1-222	ENST00000543627	TBCC	Q15814	346 aa		10.42	□□□□□ -0.74
DDB1-222	ENST00000543627	AP5B1	Q2VPB7	878 aa		10.42	□□□□□ -0.74
DDB1-222	ENST00000543627	BTBD16	Q32M84	506 aa		10.42	□□□□□ -0.74
DDB1-222	ENST00000543627	AGAP7P	Q5VUJ5	663 aa		10.42	□□□□□ -0.74
DDB1-222	ENST00000543627	GRHL2	Q6ISB3	625 aa		10.42	□□□□□ -0.74
DDB1-222	ENST00000543627	NIPAL1	Q6NVV3	410 aa		10.42	□□□□□ -0.74
DDB1-222	ENST00000543627	CHSY3	Q70JA7	882 aa		10.42	□□□□□ -0.74
DDB1-222	ENST00000543627	VN1R5	Q7Z5H4	357 aa		10.42	□□□□□ -0.74
DDB1-222	ENST00000543627	CPEB2	Q7Z5Q1	589 aa	Known RBP	10.42	□□□□□ -0.74
DDB1-222	ENST00000543627	MILR1	Q7Z6M3	343 aa		10.42	□□□□□ -0.74
DDB1-222	ENST00000543627	KBTBD2	Q8IY47	623 aa		10.42	□□□□□ -0.74

Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms