RNA–Protein interactions for RNA: ENST00000514313.1

NUP54-215, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-215ENST00000514313 SLCO4A1Q96BD0 722 aa6.57□□□□□ -1.36
NUP54-215ENST00000514313 MARK4Q96L34 752 aa6.57□□□□□ -1.36
NUP54-215ENST00000514313 LRRC2Q9BYS8 371 aa6.57□□□□□ -1.36
NUP54-215ENST00000514313 DDX47Q9H0S4 455 aaKnown RBP6.57□□□□□ -1.36
NUP54-215ENST00000514313 PPANQ9NQ55 473 aaKnown RBP6.57□□□□□ -1.36
NUP54-215ENST00000514313 PIGVQ9NUD9 493 aa6.57□□□□□ -1.36
NUP54-215ENST00000514313 PANK4Q9NVE7 773 aa6.57□□□□□ -1.36
NUP54-215ENST00000514313 PRDM4Q9UKN5 801 aa6.57□□□□□ -1.36
NUP54-215ENST00000514313 MACROD2A1Z1Q3 448 aa6.56□□□□□ -1.36
NUP54-215ENST00000514313 ZNF732B4DXR9 585 aa6.56□□□□□ -1.36
NUP54-215ENST00000514313 MAGEB2O15479 319 aa6.56□□□□□ -1.36
NUP54-215ENST00000514313 MLNRO43193 412 aa6.56□□□□□ -1.36
NUP54-215ENST00000514313 ATP6V1G1O75348 118 aa6.56□□□□□ -1.36
NUP54-215ENST00000514313 CLN5O75503 358 aa6.56□□□□□ -1.36
NUP54-215ENST00000514313 TGFAP01135 160 aa6.56□□□□□ -1.36
NUP54-215ENST00000514313 MT-ND2P03891 347 aa6.56□□□□□ -1.36
NUP54-215ENST00000514313 MMP10P09238 476 aa6.56□□□□□ -1.36
NUP54-215ENST00000514313 HPDP32754 393 aaPredicted RBP6.56□□□□□ -1.36
NUP54-215ENST00000514313 CNN1P51911 297 aaKnown RBP6.56□□□□□ -1.36
NUP54-215ENST00000514313 FOXG1P55316 489 aaPredicted RBP6.56□□□□□ -1.36
NUP54-215ENST00000514313 OR1D5P58170 312 aa6.56□□□□□ -1.36
NUP54-215ENST00000514313 POLR2FP61218 127 aaKnown RBP6.56□□□□□ -1.36
NUP54-215ENST00000514313 ARL16Q0P5N6 197 aa6.56□□□□□ -1.36
NUP54-215ENST00000514313 GAMTQ14353 236 aa6.56□□□□□ -1.36
NUP54-215ENST00000514313 WBP2NLQ6ICG8 309 aa6.56□□□□□ -1.36
NUP54-215ENST00000514313 CD164L2Q6UWJ8 174 aa6.56□□□□□ -1.36
NUP54-215ENST00000514313 DLEU7Q6UYE1 221 aa6.56□□□□□ -1.36
NUP54-215ENST00000514313 GDPD4Q6W3E5 623 aa6.56□□□□□ -1.36
NUP54-215ENST00000514313 ZDHHC17Q8IUH5 632 aa6.56□□□□□ -1.36
NUP54-215ENST00000514313 GPC2Q8N158 579 aa6.56□□□□□ -1.36
NUP54-215ENST00000514313 FBXW8Q8N3Y1 598 aa6.56□□□□□ -1.36
NUP54-215ENST00000514313 OR2T11Q8NH01 316 aa6.56□□□□□ -1.36
NUP54-215ENST00000514313 NXPE2Q96DL1 559 aa6.56□□□□□ -1.36
NUP54-215ENST00000514313 FBXL4Q9UKA2 621 aa6.56□□□□□ -1.36
NUP54-215ENST00000514313 CCPG1Q9ULG6 757 aa6.56□□□□□ -1.36
NUP54-215ENST00000514313 DOCK7Q96N67 2140 aa6.56□□□□□ -1.36
NUP54-215ENST00000514313 KIAA1210Q9ULL0 1709 aa6.56□□□□□ -1.36
NUP54-215ENST00000514313 A0A087WUV0 522 aaPredicted RBP6.55□□□□□ -1.36
NUP54-215ENST00000514313 TRBV4-1A0A0J9YWV2 114 aa6.55□□□□□ -1.36
NUP54-215ENST00000514313 CFAP73A6NFT4 308 aa6.55□□□□□ -1.36
NUP54-215ENST00000514313 A8MVM7 634 aa6.55□□□□□ -1.36
NUP54-215ENST00000514313 ACOT8O14734 319 aa6.55□□□□□ -1.36
NUP54-215ENST00000514313 EXTL3O43909 919 aa6.55□□□□□ -1.36
NUP54-215ENST00000514313 GMNNO75496 209 aa6.55□□□□□ -1.36
NUP54-215ENST00000514313 KRT33AO76009 404 aa6.55□□□□□ -1.36
NUP54-215ENST00000514313 B4GALT1P15291 398 aa6.55□□□□□ -1.36
NUP54-215ENST00000514313 RPA1P27694 616 aa6.55□□□□□ -1.36
NUP54-215ENST00000514313 GPC3P51654 580 aa6.55□□□□□ -1.36
NUP54-215ENST00000514313 ERVFC1-1P60608 527 aa6.55□□□□□ -1.36
NUP54-215ENST00000514313 OR6B2Q6IFH4 312 aa6.55□□□□□ -1.36
NUP54-215ENST00000514313 C19orf48Q6RUI8 117 aa6.55□□□□□ -1.36
NUP54-215ENST00000514313 WDR88Q6ZMY6 472 aa6.55□□□□□ -1.36
NUP54-215ENST00000514313 C17orf107Q6ZR85 190 aa6.55□□□□□ -1.36
NUP54-215ENST00000514313 BTN2A1Q7KYR7 527 aa6.55□□□□□ -1.36
NUP54-215ENST00000514313 SMIM29Q86T20 159 aa6.55□□□□□ -1.36
NUP54-215ENST00000514313 TEX9Q8N6V9 391 aa6.55□□□□□ -1.36
NUP54-215ENST00000514313 SIDT2Q8NBJ9 832 aaKnown RBP6.55□□□□□ -1.36
NUP54-215ENST00000514313 RNF149Q8NC42 400 aa6.55□□□□□ -1.36
NUP54-215ENST00000514313 SPATA18Q8TC71 538 aa6.55□□□□□ -1.36
NUP54-215ENST00000514313 APOBEC4Q8WW27 367 aaKnown RBP6.55□□□□□ -1.36
NUP54-215ENST00000514313 C10orf90Q96M02 699 aa6.55□□□□□ -1.36
NUP54-215ENST00000514313 LPAR4Q99677 370 aa6.55□□□□□ -1.36
NUP54-215ENST00000514313 WACQ9BTA9 647 aa6.55□□□□□ -1.36
NUP54-215ENST00000514313 FAM49AQ9H0Q0 323 aaPredicted RBP6.55□□□□□ -1.36
NUP54-215ENST00000514313 GPN1Q9HCN4 374 aaPredicted RBP6.55□□□□□ -1.36
NUP54-215ENST00000514313 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP6.55□□□□□ -1.36
NUP54-215ENST00000514313 KCNN3Q9UGI6 736 aa6.55□□□□□ -1.36
NUP54-215ENST00000514313 DNPEPQ9ULA0 475 aa6.55□□□□□ -1.36
NUP54-215ENST00000514313 SATB2Q9UPW6 733 aa6.55□□□□□ -1.36
NUP54-215ENST00000514313 CLCA3PQ9Y6N3 262 aa6.55□□□□□ -1.36
NUP54-215ENST00000514313 ARHGAP42A6NI28 874 aa6.54□□□□□ -1.36
NUP54-215ENST00000514313 TEX28O15482 410 aa6.54□□□□□ -1.36
NUP54-215ENST00000514313 FGF17O60258 216 aa6.54□□□□□ -1.36
NUP54-215ENST00000514313 MT-ATP6P00846 226 aa6.54□□□□□ -1.36
NUP54-215ENST00000514313 EDN1P05305 212 aa6.54□□□□□ -1.36
NUP54-215ENST00000514313 F7P08709 466 aaPredicted RBP6.54□□□□□ -1.36
NUP54-215ENST00000514313 ODC1P11926 461 aa6.54□□□□□ -1.36
NUP54-215ENST00000514313 ACP1P24666 158 aa6.54□□□□□ -1.36
NUP54-215ENST00000514313 CALRP27797 417 aaKnown RBP6.54□□□□□ -1.36
NUP54-215ENST00000514313 OR1D2P34982 312 aa6.54□□□□□ -1.36
NUP54-215ENST00000514313 MAGEA11P43364 429 aa6.54□□□□□ -1.36
NUP54-215ENST00000514313 PITPNBP48739 271 aa6.54□□□□□ -1.36
NUP54-215ENST00000514313 MSLNQ13421 630 aaPredicted RBP6.54□□□□□ -1.36
NUP54-215ENST00000514313 ITGA9Q13797 1035 aa6.54□□□□□ -1.36
NUP54-215ENST00000514313 GIT2Q14161 759 aa6.54□□□□□ -1.36
NUP54-215ENST00000514313 KRT31Q15323 416 aa6.54□□□□□ -1.36
NUP54-215ENST00000514313 ZNF74Q16587 644 aa6.54□□□□□ -1.36
NUP54-215ENST00000514313 EPC2Q52LR7 807 aa6.54□□□□□ -1.36
NUP54-215ENST00000514313 ARHGEF16Q5VV41 709 aa6.54□□□□□ -1.36
NUP54-215ENST00000514313 FCRLAQ7L513 359 aa6.54□□□□□ -1.36
NUP54-215ENST00000514313 FAM89BQ8N5H3 189 aa6.54□□□□□ -1.36
NUP54-215ENST00000514313 Q8N9P0 234 aaPredicted RBP6.54□□□□□ -1.36
NUP54-215ENST00000514313 MRPL38Q96DV4 380 aaKnown RBP6.54□□□□□ -1.36
NUP54-215ENST00000514313 SAMD8Q96LT4 415 aa6.54□□□□□ -1.36
NUP54-215ENST00000514313 NSMCE2Q96MF7 247 aa6.54□□□□□ -1.36
NUP54-215ENST00000514313 GUCD1Q96NT3 240 aa6.54□□□□□ -1.36
NUP54-215ENST00000514313 RNF186Q9NXI6 227 aa6.54□□□□□ -1.36
NUP54-215ENST00000514313 NDUFA13Q9P0J0 144 aa6.54□□□□□ -1.36
NUP54-215ENST00000514313 RGSL1A5PLK6 1076 aa6.53□□□□□ -1.36
NUP54-215ENST00000514313 P2RY10O00398 339 aa6.53□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 59.7 ms