RNA–Protein interactions for RNA: ENST00000641587.1

PHGDH-222, Transcript of phosphoglycerate dehydrogenase, human

Gene PHGDH, Length 566 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PHGDH-222	ENST00000641587	SOS1	Q07889	1333 aa	Predicted RBP	13.64	□□□□□ -0.23
PHGDH-222	ENST00000641587	MRC1	P22897	1456 aa		13.64	□□□□□ -0.23
PHGDH-222	ENST00000641587	TM4SF1	P30408	202 aa		13.64	□□□□□ -0.23
PHGDH-222	ENST00000641587	NRXN2	Q9P2S2	1712 aa		13.64	□□□□□ -0.23
PHGDH-222	ENST00000641587	PRELP	P51888	382 aa		13.63	□□□□□ -0.23
PHGDH-222	ENST00000641587	NFIX	Q14938	502 aa		13.63	□□□□□ -0.23
PHGDH-222	ENST00000641587	KLRG1	Q96E93	195 aa		13.63	□□□□□ -0.23
PHGDH-222	ENST00000641587	SLC52A2	Q9HAB3	445 aa		13.63	□□□□□ -0.23
PHGDH-222	ENST00000641587	ZBTB1	Q9Y2K1	713 aa		13.63	□□□□□ -0.23
PHGDH-222	ENST00000641587	DLEC1	Q9Y238	1755 aa		13.63	□□□□□ -0.23
PHGDH-222	ENST00000641587	KDM2B	Q8NHM5	1336 aa		13.63	□□□□□ -0.23
PHGDH-222	ENST00000641587	COL15A1	P39059	1388 aa		13.62	□□□□□ -0.23
PHGDH-222	ENST00000641587	CARMIL3	Q8ND23	1372 aa		13.62	□□□□□ -0.23
PHGDH-222	ENST00000641587	CCDC88A	Q3V6T2	1871 aa		13.62	□□□□□ -0.23
PHGDH-222	ENST00000641587	ZPR1	O75312	459 aa		13.62	□□□□□ -0.23
PHGDH-222	ENST00000641587	HMOX1	P09601	288 aa		13.62	□□□□□ -0.23
PHGDH-222	ENST00000641587	CYP19A1	P11511	503 aa	Predicted RBP	13.62	□□□□□ -0.23
PHGDH-222	ENST00000641587	AKAP4	Q5JQC9	854 aa		13.62	□□□□□ -0.23
PHGDH-222	ENST00000641587	BCL2L12	Q9HB09	334 aa		13.62	□□□□□ -0.23
PHGDH-222	ENST00000641587	TIAM2	Q8IVF5	1701 aa		13.61	□□□□□ -0.23
PHGDH-222	ENST00000641587	RNMT	O43148	476 aa	Known RBP	13.61	□□□□□ -0.23
PHGDH-222	ENST00000641587	FSTL1	Q12841	308 aa		13.61	□□□□□ -0.23
PHGDH-222	ENST00000641587	ZNF316	A6NFI3	1004 aa	Predicted RBP	13.6	□□□□□ -0.23
PHGDH-222	ENST00000641587	COL13A1	Q5TAT6	717 aa	Predicted RBP	13.6	□□□□□ -0.23
PHGDH-222	ENST00000641587	UBR2	Q8IWV8	1755 aa		13.6	□□□□□ -0.23
PHGDH-222	ENST00000641587	JMY	Q8N9B5	988 aa		13.59	□□□□□ -0.23
PHGDH-222	ENST00000641587	NARF	Q9UHQ1	456 aa		13.59	□□□□□ -0.23
PHGDH-222	ENST00000641587	KNSTRN	Q9Y448	316 aa		13.59	□□□□□ -0.23
PHGDH-222	ENST00000641587	ANKRD31	Q8N7Z5	1873 aa		13.59	□□□□□ -0.23
PHGDH-222	ENST00000641587	SERPINB2	P05120	415 aa		13.58	□□□□□ -0.24
PHGDH-222	ENST00000641587	CANX	P27824	592 aa	Known RBP	13.58	□□□□□ -0.24
PHGDH-222	ENST00000641587	MTHFSD	Q2M296	383 aa	Known RBP	13.58	□□□□□ -0.24
PHGDH-222	ENST00000641587	AMER1	Q5JTC6	1135 aa	Predicted RBP	13.58	□□□□□ -0.24
PHGDH-222	ENST00000641587	COL11A2	P13942	1736 aa	Predicted RBP	13.58	□□□□□ -0.24
PHGDH-222	ENST00000641587	NFKBIE	O00221	500 aa		13.57	□□□□□ -0.24
PHGDH-222	ENST00000641587	BICDL1	Q6ZP65	573 aa		13.57	□□□□□ -0.24
PHGDH-222	ENST00000641587	C2CD5	Q86YS7	1000 aa		13.57	□□□□□ -0.24
PHGDH-222	ENST00000641587	SMC1B	Q8NDV3	1235 aa		13.57	□□□□□ -0.24
PHGDH-222	ENST00000641587	SCN7A	Q01118	1682 aa		13.56	□□□□□ -0.24
PHGDH-222	ENST00000641587	CAPN15	O75808	1086 aa		13.56	□□□□□ -0.24
PHGDH-222	ENST00000641587	LMNB1	P20700	586 aa		13.56	□□□□□ -0.24
PHGDH-222	ENST00000641587	CCDC24	Q8N4L8	307 aa		13.56	□□□□□ -0.24
PHGDH-222	ENST00000641587	GLTPD2	A6NH11	291 aa		13.55	□□□□□ -0.24
PHGDH-222	ENST00000641587	TTLL6	Q8N841	843 aa		13.55	□□□□□ -0.24
PHGDH-222	ENST00000641587	ZNF219	Q9P2Y4	722 aa	Predicted RBP	13.55	□□□□□ -0.24
PHGDH-222	ENST00000641587	CACNA1S	Q13698	1873 aa		13.55	□□□□□ -0.24
PHGDH-222	ENST00000641587	TBC1D9B	Q66K14	1250 aa		13.54	□□□□□ -0.24
PHGDH-222	ENST00000641587	ZC3H4	Q9UPT8	1303 aa	Known RBP	13.54	□□□□□ -0.24
PHGDH-222	ENST00000641587	SIPA1L3	O60292	1781 aa	Predicted RBP	13.53	□□□□□ -0.24
PHGDH-222	ENST00000641587	POTEC	B2RU33	542 aa		13.53	□□□□□ -0.24
PHGDH-222	ENST00000641587	VEGFA	P15692	232 aa	Predicted RBP	13.53	□□□□□ -0.24
PHGDH-222	ENST00000641587	EIF5	P55010	431 aa	Known RBP	13.53	□□□□□ -0.24
PHGDH-222	ENST00000641587	VSIG10	Q8N0Z9	540 aa		13.53	□□□□□ -0.24
PHGDH-222	ENST00000641587	ZNF330	Q9Y3S2	320 aa	Predicted RBP	13.53	□□□□□ -0.24
PHGDH-222	ENST00000641587	KIF7	Q2M1P5	1343 aa		13.53	□□□□□ -0.24
PHGDH-222	ENST00000641587	FER1L6	Q2WGJ9	1857 aa		13.53	□□□□□ -0.24
PHGDH-222	ENST00000641587		H0YIN7	160 aa		13.52	□□□□□ -0.25
PHGDH-222	ENST00000641587	CNGB1	Q14028	1251 aa	Predicted RBP	13.52	□□□□□ -0.25
PHGDH-222	ENST00000641587	CC2D1B	Q5T0F9	858 aa	Known RBP	13.52	□□□□□ -0.25
PHGDH-222	ENST00000641587	ZNF622	Q969S3	477 aa	Known RBP eCLIP	13.52	□□□□□ -0.25	2e-6	■■■□□ 15.2
PHGDH-222	ENST00000641587	ZNF496	Q96IT1	587 aa	Predicted RBP	13.52	□□□□□ -0.25
PHGDH-222	ENST00000641587	COL3A1	P02461	1466 aa	Predicted RBP	13.52	□□□□□ -0.25
PHGDH-222	ENST00000641587	DICER1	Q9UPY3	1922 aa	Known RBP	13.52	□□□□□ -0.25
PHGDH-222	ENST00000641587	HEG1	Q9ULI3	1381 aa		13.51	□□□□□ -0.25
PHGDH-222	ENST00000641587	C21orf2	O43822	256 aa		13.51	□□□□□ -0.25
PHGDH-222	ENST00000641587	DIAPH1	O60610	1272 aa	Known RBP	13.51	□□□□□ -0.25
PHGDH-222	ENST00000641587	HSPA1A	P0DMV8	641 aa	Known RBP	13.51	□□□□□ -0.25
PHGDH-222	ENST00000641587	HSPA1B	P0DMV9	641 aa	Known RBP	13.51	□□□□□ -0.25
PHGDH-222	ENST00000641587	TNS4	Q8IZW8	715 aa		13.51	□□□□□ -0.25
PHGDH-222	ENST00000641587	TTC5	Q8N0Z6	440 aa		13.51	□□□□□ -0.25
PHGDH-222	ENST00000641587	TBC1D2B	Q9UPU7	963 aa		13.51	□□□□□ -0.25
PHGDH-222	ENST00000641587	SLX4	Q8IY92	1834 aa		13.5	□□□□□ -0.25
PHGDH-222	ENST00000641587	PRR5L	Q6MZQ0	368 aa		13.5	□□□□□ -0.25
PHGDH-222	ENST00000641587	IL17RE	Q8NFR9	667 aa		13.5	□□□□□ -0.25
PHGDH-222	ENST00000641587	BCOR	Q6W2J9	1755 aa		13.5	□□□□□ -0.25
PHGDH-222	ENST00000641587	PER1	O15534	1290 aa	Predicted RBP	13.49	□□□□□ -0.25
PHGDH-222	ENST00000641587	STARD3NL	O95772	234 aa		13.49	□□□□□ -0.25
PHGDH-222	ENST00000641587	A1BG	P04217	495 aa		13.49	□□□□□ -0.25
PHGDH-222	ENST00000641587	POTEI	P0CG38	1075 aa		13.49	□□□□□ -0.25
PHGDH-222	ENST00000641587	POTEJ	P0CG39	1038 aa		13.49	□□□□□ -0.25
PHGDH-222	ENST00000641587	U2SURP	O15042	1029 aa	Known RBP	13.48	□□□□□ -0.25
PHGDH-222	ENST00000641587	KCNQ3	O43525	872 aa		13.48	□□□□□ -0.25
PHGDH-222	ENST00000641587	PIP4K2A	P48426	406 aa	Predicted RBP	13.48	□□□□□ -0.25
PHGDH-222	ENST00000641587	TEF	Q10587	303 aa		13.48	□□□□□ -0.25
PHGDH-222	ENST00000641587	ERFE	Q4G0M1	354 aa		13.48	□□□□□ -0.25
PHGDH-222	ENST00000641587	ZNF790	Q6PG37	636 aa		13.48	□□□□□ -0.25
PHGDH-222	ENST00000641587		A0A087WZG4	1122 aa		13.47	□□□□□ -0.25
PHGDH-222	ENST00000641587	CAMTA2	O94983	1202 aa		13.47	□□□□□ -0.25
PHGDH-222	ENST00000641587	BRIP1	Q9BX63	1249 aa		13.47	□□□□□ -0.25
PHGDH-222	ENST00000641587	ARFGEF2	Q9Y6D5	1785 aa		13.47	□□□□□ -0.25
PHGDH-222	ENST00000641587	GNAT3	A8MTJ3	354 aa		13.46	□□□□□ -0.25
PHGDH-222	ENST00000641587	DDN	O94850	711 aa	Predicted RBP	13.46	□□□□□ -0.25
PHGDH-222	ENST00000641587	PDE6B	P35913	854 aa		13.46	□□□□□ -0.25
PHGDH-222	ENST00000641587	IL6ST	P40189	918 aa	Predicted RBP	13.46	□□□□□ -0.25
PHGDH-222	ENST00000641587	CNBD1	Q8NA66	436 aa		13.46	□□□□□ -0.25
PHGDH-222	ENST00000641587	PRAMEF22	A3QJZ6	481 aa		13.45	□□□□□ -0.26
PHGDH-222	ENST00000641587	DPY19L2	Q6NUT2	758 aa		13.45	□□□□□ -0.26
PHGDH-222	ENST00000641587	PRPF40B	Q6NWY9	871 aa	Known RBP	13.45	□□□□□ -0.26
PHGDH-222	ENST00000641587	TAOK3	Q9H2K8	898 aa		13.45	□□□□□ -0.26
PHGDH-222	ENST00000641587	MKRN1	Q9UHC7	482 aa	Known RBP	13.45	□□□□□ -0.26

Retrieved 100 of 20,778 RNA–protein pairs in 54.7 ms