RNA–Protein interactions for RNA: ENST00000637823.1

CLN6-223, Transcript of CLN6, transmembrane ER protein, humanhuman

TSL 5

Gene CLN6, Length 717 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-223ENST00000637823 ABCC4O15439 1325 aa14.95□□□□□ -0.02
CLN6-223ENST00000637823 PRAMEF22A3QJZ6 481 aa14.95□□□□□ -0.02
CLN6-223ENST00000637823 FLIIQ13045 1269 aa14.95□□□□□ -0.02
CLN6-223ENST00000637823 VSIG10Q8N0Z9 540 aa14.95□□□□□ -0.02
CLN6-223ENST00000637823 TMEM57Q8N5G2 664 aa14.95□□□□□ -0.02
CLN6-223ENST00000637823 SYTL4Q96C24 671 aaPredicted RBP14.95□□□□□ -0.02
CLN6-223ENST00000637823 CCDC136Q96JN2 1154 aa14.95□□□□□ -0.02
CLN6-223ENST00000637823 CHMP4BQ9H444 224 aaKnown RBP14.95□□□□□ -0.02
CLN6-223ENST00000637823 DDX21Q9NR30 783 aaKnown RBP eCLIP14.95□□□□□ -0.02
CLN6-223ENST00000637823 HYPKQ9NX55 129 aa14.95□□□□□ -0.02
CLN6-223ENST00000637823 CHPF2Q9P2E5 772 aa14.95□□□□□ -0.02
CLN6-223ENST00000637823 DDX19BQ9UMR2 479 aa14.95□□□□□ -0.02
CLN6-223ENST00000637823 SBF2Q86WG5 1849 aa14.94□□□□□ -0.02
CLN6-223ENST00000637823 PTCD1O75127 700 aaKnown RBP14.94□□□□□ -0.02
CLN6-223ENST00000637823 SEPT12Q8IYM1 358 aa14.94□□□□□ -0.02
CLN6-223ENST00000637823 USP16Q9Y5T5 823 aa14.94□□□□□ -0.02
CLN6-223ENST00000637823 BRWD3Q6RI45 1802 aa14.94□□□□□ -0.02
CLN6-223ENST00000637823 RGS12O14924 1447 aa14.93□□□□□ -0.02
CLN6-223ENST00000637823 FKBP5Q13451 457 aaPredicted RBP14.93□□□□□ -0.02
CLN6-223ENST00000637823 INTS3Q68E01 1043 aaKnown RBP14.93□□□□□ -0.02
CLN6-223ENST00000637823 ITPRIPQ8IWB1 547 aa14.93□□□□□ -0.02
CLN6-223ENST00000637823 ACSBG1Q96GR2 724 aa14.93□□□□□ -0.02
CLN6-223ENST00000637823 ERBB4Q15303 1308 aa14.92□□□□□ -0.02
CLN6-223ENST00000637823 RBM6P78332 1123 aaKnown RBP14.92□□□□□ -0.02
CLN6-223ENST00000637823 PDIA6Q15084 440 aa14.92□□□□□ -0.02
CLN6-223ENST00000637823 B4GALNT3Q6L9W6 998 aa14.92□□□□□ -0.02
CLN6-223ENST00000637823 PHAXQ9H814 394 aaKnown RBP14.92□□□□□ -0.02
CLN6-223ENST00000637823 N4BP2Q86UW6 1770 aaPredicted RBP14.92□□□□□ -0.02
CLN6-223ENST00000637823 SMARCC1Q92922 1105 aaPredicted RBP14.91□□□□□ -0.02
CLN6-223ENST00000637823 RBM42Q9BTD8 480 aaKnown RBP14.91□□□□□ -0.02
CLN6-223ENST00000637823 NHSQ6T4R5 1651 aa14.9□□□□□ -0.02
CLN6-223ENST00000637823 CCT4P50991 539 aaKnown RBP14.9□□□□□ -0.02
CLN6-223ENST00000637823 PROSER3Q2NL68 480 aa14.9□□□□□ -0.02
CLN6-223ENST00000637823 ZBTB7BO15156 539 aaPredicted RBP14.89□□□□□ -0.03
CLN6-223ENST00000637823 KCNQ2O43526 872 aa14.89□□□□□ -0.03
CLN6-223ENST00000637823 STARD3NLO95772 234 aa14.89□□□□□ -0.03
CLN6-223ENST00000637823 DDX58O95786 925 aaKnown RBP14.89□□□□□ -0.03
CLN6-223ENST00000637823 ANXA1P04083 346 aa14.89□□□□□ -0.03
CLN6-223ENST00000637823 ZBTB40Q9NUA8 1239 aa14.89□□□□□ -0.03
CLN6-223ENST00000637823 ZNF831Q5JPB2 1677 aa14.89□□□□□ -0.03
CLN6-223ENST00000637823 BTAF1O14981 1849 aa14.89□□□□□ -0.03
CLN6-223ENST00000637823 PXDNLA1KZ92 1463 aa14.89□□□□□ -0.03
CLN6-223ENST00000637823 F6X3S4 739 aa14.88□□□□□ -0.03
CLN6-223ENST00000637823 TJP1Q07157 1748 aa14.87□□□□□ -0.03
CLN6-223ENST00000637823 MYL6BP14649 208 aa14.87□□□□□ -0.03
CLN6-223ENST00000637823 SLC4A10Q6U841 1118 aa14.87□□□□□ -0.03
CLN6-223ENST00000637823 KSR2Q6VAB6 950 aa14.87□□□□□ -0.03
CLN6-223ENST00000637823 DNAJC10Q8IXB1 793 aa14.87□□□□□ -0.03
CLN6-223ENST00000637823 CICQ96RK0 1608 aaPredicted RBP14.87□□□□□ -0.03
CLN6-223ENST00000637823 PI4KAP2A4QPH2 592 aa14.86□□□□□ -0.03
CLN6-223ENST00000637823 NBPF26B4DH59 902 aa14.86□□□□□ -0.03
CLN6-223ENST00000637823 A1BGP04217 495 aa14.86□□□□□ -0.03
CLN6-223ENST00000637823 RXRBP28702 533 aa14.86□□□□□ -0.03
CLN6-223ENST00000637823 NBPF14Q5TI25 921 aa14.86□□□□□ -0.03
CLN6-223ENST00000637823 NBPF10Q6P3W6 841 aaKnown RBP14.86□□□□□ -0.03
CLN6-223ENST00000637823 FAM196AQ6ZSG2 479 aa14.86□□□□□ -0.03
CLN6-223ENST00000637823 KRT27Q7Z3Y8 459 aa14.86□□□□□ -0.03
CLN6-223ENST00000637823 LRP10Q7Z4F1 713 aa14.86□□□□□ -0.03
CLN6-223ENST00000637823 NBPF15Q8N660 670 aa14.86□□□□□ -0.03
CLN6-223ENST00000637823 PI4KAP1Q8N8J0 262 aa14.86□□□□□ -0.03
CLN6-223ENST00000637823 XAGE3Q8WTP9 111 aa14.86□□□□□ -0.03
CLN6-223ENST00000637823 DNAAF4Q8WXU2 420 aa14.86□□□□□ -0.03
CLN6-223ENST00000637823 SLC4A9Q96Q91 983 aa14.86□□□□□ -0.03
CLN6-223ENST00000637823 ADCY9O60503 1353 aa14.85□□□□□ -0.03
CLN6-223ENST00000637823 CYP19A1P11511 503 aaPredicted RBP14.85□□□□□ -0.03
CLN6-223ENST00000637823 AIMP1Q12904 312 aaKnown RBP14.85□□□□□ -0.03
CLN6-223ENST00000637823 FAM182BQ5T319 152 aa14.85□□□□□ -0.03
CLN6-223ENST00000637823 COPS6Q7L5N1 327 aa14.85□□□□□ -0.03
CLN6-223ENST00000637823 PALLDQ8WX93 1383 aa14.85□□□□□ -0.03
CLN6-223ENST00000637823 LOC102724428A0A0B4J2F2 783 aa14.84□□□□□ -0.03
CLN6-223ENST00000637823 SIK1P57059 783 aa14.84□□□□□ -0.03
CLN6-223ENST00000637823 ANKRD13DQ6ZTN6 518 aa14.84□□□□□ -0.03
CLN6-223ENST00000637823 SRCIN1Q9C0H9 1055 aa14.84□□□□□ -0.03
CLN6-223ENST00000637823 MAP3K2Q9Y2U5 619 aa14.84□□□□□ -0.03
CLN6-223ENST00000637823 PCDHB15Q9Y5E8 787 aa14.84□□□□□ -0.03
CLN6-223ENST00000637823 ATP10DQ9P241 1426 aa14.83□□□□□ -0.03
CLN6-223ENST00000637823 ATP6V1AP38606 617 aa14.83□□□□□ -0.04
CLN6-223ENST00000637823 PIP4K2AP48426 406 aaPredicted RBP14.83□□□□□ -0.04
CLN6-223ENST00000637823 BEND3Q5T5X7 828 aa14.83□□□□□ -0.04
CLN6-223ENST00000637823 CENPQQ7L2Z9 268 aaPredicted RBP14.83□□□□□ -0.04
CLN6-223ENST00000637823 RIC3Q7Z5B4 369 aa14.83□□□□□ -0.04
CLN6-223ENST00000637823 BCL11BQ9C0K0 894 aaPredicted RBP14.83□□□□□ -0.04
CLN6-223ENST00000637823 RWDD1Q9H446 243 aaPredicted RBP14.83□□□□□ -0.04
CLN6-223ENST00000637823 RGS17Q9UGC6 210 aaPredicted RBP14.83□□□□□ -0.04
CLN6-223ENST00000637823 ARFGEF2Q9Y6D5 1785 aa14.83□□□□□ -0.04
CLN6-223ENST00000637823 ALDH1L1O75891 902 aa14.82□□□□□ -0.04
CLN6-223ENST00000637823 GNAI3P08754 354 aa14.82□□□□□ -0.04
CLN6-223ENST00000637823 PLBD2Q8NHP8 589 aa14.82□□□□□ -0.04
CLN6-223ENST00000637823 LY75O60449 1722 aa14.82□□□□□ -0.04
CLN6-223ENST00000637823 COL5A3P25940 1745 aaPredicted RBP14.82□□□□□ -0.04
CLN6-223ENST00000637823 MYH14Q7Z406 1995 aaKnown RBP14.82□□□□□ -0.04
CLN6-223ENST00000637823 AFDNP55196 1824 aaKnown RBP14.81□□□□□ -0.04
CLN6-223ENST00000637823 PTF1AQ7RTS3 328 aa14.81□□□□□ -0.04
CLN6-223ENST00000637823 METTL22Q9BUU2 404 aaPredicted RBP14.81□□□□□ -0.04
CLN6-223ENST00000637823 KDM2BQ8NHM5 1336 aa14.81□□□□□ -0.04
CLN6-223ENST00000637823 RREB1Q92766 1687 aa14.81□□□□□ -0.04
CLN6-223ENST00000637823 NUP188Q5SRE5 1749 aa14.8□□□□□ -0.04
CLN6-223ENST00000637823 IGHDP01880 384 aa14.8□□□□□ -0.04
CLN6-223ENST00000637823 NEXNQ0ZGT2 675 aa14.8□□□□□ -0.04
CLN6-223ENST00000637823 HDAC1Q13547 482 aaPredicted RBP14.8□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 64.9 ms