RNA–Protein interactions for RNA: ENST00000623007.3

LDB3-208, Transcript of LIM domain binding 3, humanhuman

TSL 1 (best) BASIC

Gene LDB3, Length 1,664 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3-208ENST00000623007 PI4KAP2A4QPH2 592 aa20.29■□□□□ 0.84
LDB3-208ENST00000623007 MSH5O43196 834 aa20.29■□□□□ 0.84
LDB3-208ENST00000623007 BEND3Q5T5X7 828 aa20.29■□□□□ 0.84
LDB3-208ENST00000623007 PI4KAP1Q8N8J0 262 aa20.29■□□□□ 0.84
LDB3-208ENST00000623007 USP44Q9H0E7 712 aa20.29■□□□□ 0.84
LDB3-208ENST00000623007 HSP90AB4PQ58FF6 505 aa20.29■□□□□ 0.84
LDB3-208ENST00000623007 CDCA7Q9BWT1 371 aaPredicted RBP20.29■□□□□ 0.84
LDB3-208ENST00000623007 PLCH1Q4KWH8 1693 aa20.28■□□□□ 0.84
LDB3-208ENST00000623007 ADCY9O60503 1353 aa20.27■□□□□ 0.84
LDB3-208ENST00000623007 RAB11FIP3O75154 756 aa20.27■□□□□ 0.84
LDB3-208ENST00000623007 NEXNQ0ZGT2 675 aa20.27■□□□□ 0.84
LDB3-208ENST00000623007 LARP1Q6PKG0 1096 aaKnown RBP20.27■□□□□ 0.84
LDB3-208ENST00000623007 LINS1Q8NG48 757 aa20.27■□□□□ 0.84
LDB3-208ENST00000623007 STRN4Q9NRL3 753 aa20.27■□□□□ 0.84
LDB3-208ENST00000623007 TOM1O60784 492 aa20.26■□□□□ 0.83
LDB3-208ENST00000623007 BECN1Q14457 450 aa20.26■□□□□ 0.83
LDB3-208ENST00000623007 SSH3Q8TE77 659 aa20.25■□□□□ 0.83
LDB3-208ENST00000623007 ZNF496Q96IT1 587 aaPredicted RBP20.25■□□□□ 0.83
LDB3-208ENST00000623007 OSBPL3Q9H4L5 887 aa20.25■□□□□ 0.83
LDB3-208ENST00000623007 BTG4Q9NY30 223 aa20.25■□□□□ 0.83
LDB3-208ENST00000623007 UBR2Q8IWV8 1755 aa20.25■□□□□ 0.83
LDB3-208ENST00000623007 PAPPAQ13219 1627 aa20.25■□□□□ 0.83
LDB3-208ENST00000623007 C5P01031 1676 aa20.24■□□□□ 0.83
LDB3-208ENST00000623007 CASC1Q6TDU7 716 aa20.24■□□□□ 0.83
LDB3-208ENST00000623007 TBC1D32Q96NH3 1257 aa20.24■□□□□ 0.83
LDB3-208ENST00000623007 ANP32EQ9BTT0 268 aa20.24■□□□□ 0.83
LDB3-208ENST00000623007 LRRCC1Q9C099 1032 aa20.24■□□□□ 0.83
LDB3-208ENST00000623007 MAP3K2Q9Y2U5 619 aa20.24■□□□□ 0.83
LDB3-208ENST00000623007 LRRFIP2Q9Y608 721 aaKnown RBP20.24■□□□□ 0.83
LDB3-208ENST00000623007 SHANK3Q9BYB0 1731 aa20.24■□□□□ 0.83
LDB3-208ENST00000623007 LRP6O75581 1613 aa20.23■□□□□ 0.83
LDB3-208ENST00000623007 SLC39A6Q13433 755 aa20.23■□□□□ 0.83
LDB3-208ENST00000623007 MTX1Q13505 466 aa20.23■□□□□ 0.83
LDB3-208ENST00000623007 PLEKHM2Q8IWE5 1019 aa20.23■□□□□ 0.83
LDB3-208ENST00000623007 TEX13AQ9BXU3 409 aaPredicted RBP20.23■□□□□ 0.83
LDB3-208ENST00000623007 PHLPP1O60346 1717 aa20.23■□□□□ 0.83
LDB3-208ENST00000623007 C9orf78Q9NZ63 289 aaPredicted RBP20.22■□□□□ 0.83
LDB3-208ENST00000623007 THRAP3Q9Y2W1 955 aaKnown RBP20.22■□□□□ 0.83
LDB3-208ENST00000623007 UTYO14607 1347 aa20.22■□□□□ 0.83
LDB3-208ENST00000623007 CDC45O75419 566 aa20.22■□□□□ 0.83
LDB3-208ENST00000623007 PDIA6Q15084 440 aa20.22■□□□□ 0.83
LDB3-208ENST00000623007 RIC3Q7Z5B4 369 aa20.22■□□□□ 0.83
LDB3-208ENST00000623007 POLA2Q14181 598 aa20.21■□□□□ 0.83
LDB3-208ENST00000623007 TTC22Q5TAA0 569 aa20.21■□□□□ 0.83
LDB3-208ENST00000623007 AOX1Q06278 1338 aa20.21■□□□□ 0.83
LDB3-208ENST00000623007 DISP2A7MBM2 1401 aa20.21■□□□□ 0.83
LDB3-208ENST00000623007 COL16A1Q07092 1604 aaPredicted RBP20.2■□□□□ 0.83
LDB3-208ENST00000623007 TNS2Q63HR2 1409 aa20.2■□□□□ 0.82
LDB3-208ENST00000623007 VSIG10Q8N0Z9 540 aa20.19■□□□□ 0.82
LDB3-208ENST00000623007 ERC1Q8IUD2 1116 aa20.19■□□□□ 0.82
LDB3-208ENST00000623007 TMOD3Q9NYL9 352 aa20.19■□□□□ 0.82
LDB3-208ENST00000623007 COL15A1P39059 1388 aa20.18■□□□□ 0.82
LDB3-208ENST00000623007 GRM8O00222 908 aa20.18■□□□□ 0.82
LDB3-208ENST00000623007 ANKRD13DQ6ZTN6 518 aa20.18■□□□□ 0.82
LDB3-208ENST00000623007 METTL22Q9BUU2 404 aaPredicted RBP20.18■□□□□ 0.82
LDB3-208ENST00000623007 C22orf23Q9BZE7 217 aa20.18■□□□□ 0.82
LDB3-208ENST00000623007 PROSER3Q2NL68 480 aa20.17■□□□□ 0.82
LDB3-208ENST00000623007 DDX54Q8TDD1 881 aaKnown RBP20.17■□□□□ 0.82
LDB3-208ENST00000623007 KIF1BPQ96EK5 621 aa20.17■□□□□ 0.82
LDB3-208ENST00000623007 WNK3Q9BYP7 1800 aa20.17■□□□□ 0.82
LDB3-208ENST00000623007 NWD2Q9ULI1 1742 aa20.16■□□□□ 0.82
LDB3-208ENST00000623007 PNMA6EA0A0J9YXQ4 647 aa20.16■□□□□ 0.82
LDB3-208ENST00000623007 SRGAP3O43295 1099 aa20.16■□□□□ 0.82
LDB3-208ENST00000623007 SEC24BO95487 1268 aa20.16■□□□□ 0.82
LDB3-208ENST00000623007 PPP1R42Q7Z4L9 355 aa20.16■□□□□ 0.82
LDB3-208ENST00000623007 GLI3P10071 1580 aa20.16■□□□□ 0.82
LDB3-208ENST00000623007 KCPQ6ZWJ8 1503 aa20.16■□□□□ 0.82
LDB3-208ENST00000623007 PRAMEF22A3QJZ6 481 aa20.16■□□□□ 0.82
LDB3-208ENST00000623007 ANXA1P04083 346 aa20.16■□□□□ 0.82
LDB3-208ENST00000623007 RBM25P49756 843 aaKnown RBP20.16■□□□□ 0.82
LDB3-208ENST00000623007 COPS6Q7L5N1 327 aa20.16■□□□□ 0.82
LDB3-208ENST00000623007 PLBD2Q8NHP8 589 aa20.16■□□□□ 0.82
LDB3-208ENST00000623007 XAGE3Q8WTP9 111 aa20.16■□□□□ 0.82
LDB3-208ENST00000623007 EXOC5O00471 708 aa20.15■□□□□ 0.82
LDB3-208ENST00000623007 NBPF7P0C2Y1 421 aaPredicted RBP20.15■□□□□ 0.82
LDB3-208ENST00000623007 USP16Q9Y5T5 823 aa20.15■□□□□ 0.82
LDB3-208ENST00000623007 MFAP1P55081 439 aaKnown RBP20.14■□□□□ 0.81
LDB3-208ENST00000623007 STAP2Q9UGK3 403 aa20.14■□□□□ 0.81
LDB3-208ENST00000623007 MYL6BP14649 208 aa20.13■□□□□ 0.81
LDB3-208ENST00000623007 PDE1AP54750 535 aa20.13■□□□□ 0.81
LDB3-208ENST00000623007 LRP10Q7Z4F1 713 aa20.13■□□□□ 0.81
LDB3-208ENST00000623007 EXOC6BQ9Y2D4 811 aa20.13■□□□□ 0.81
LDB3-208ENST00000623007 SURF6O75683 361 aaKnown RBP20.13■□□□□ 0.81
LDB3-208ENST00000623007 AIMP1Q12904 312 aaKnown RBP20.13■□□□□ 0.81
LDB3-208ENST00000623007 NEURL1BA8MQ27 555 aa20.12■□□□□ 0.81
LDB3-208ENST00000623007 MX1P20591 662 aa20.12■□□□□ 0.81
LDB3-208ENST00000623007 TBC1D9Q6ZT07 1266 aa20.12■□□□□ 0.81
LDB3-208ENST00000623007 IL27Q8NEV9 243 aa20.12■□□□□ 0.81
LDB3-208ENST00000623007 NRAPQ86VF7 1730 aa20.11■□□□□ 0.81
LDB3-208ENST00000623007 SALL3Q9BXA9 1300 aa20.11■□□□□ 0.81
LDB3-208ENST00000623007 GSPT1P15170 499 aaKnown RBP20.11■□□□□ 0.81
LDB3-208ENST00000623007 MYT1Q01538 1121 aa20.11■□□□□ 0.81
LDB3-208ENST00000623007 GCKRQ14397 625 aa20.11■□□□□ 0.81
LDB3-208ENST00000623007 TOGARAM1Q9Y4F4 1720 aa20.11■□□□□ 0.81
LDB3-208ENST00000623007 ARFGEF2Q9Y6D5 1785 aa20.1■□□□□ 0.81
LDB3-208ENST00000623007 USP35Q9P2H5 1018 aa20.1■□□□□ 0.81
LDB3-208ENST00000623007 REC8O95072 547 aa20.1■□□□□ 0.81
LDB3-208ENST00000623007 STARD3NLO95772 234 aa20.1■□□□□ 0.81
LDB3-208ENST00000623007 RHPN1Q8TCX5 695 aa20.1■□□□□ 0.81
LDB3-208ENST00000623007 APBB1O00213 710 aa20.09■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms