RNA–Protein interactions for RNA: ENST00000597995.1

TRIM28-212, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 702 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-212ENST00000597995 PER1O15534 1290 aaPredicted RBP16.94■□□□□ 0.3
TRIM28-212ENST00000597995 DIAPH1O60610 1272 aaKnown RBP16.94■□□□□ 0.3
TRIM28-212ENST00000597995 MTHFSDQ2M296 383 aaKnown RBP16.94■□□□□ 0.3
TRIM28-212ENST00000597995 KDM2BQ8NHM5 1336 aa16.94■□□□□ 0.3
TRIM28-212ENST00000597995 NFIXQ14938 502 aa16.93■□□□□ 0.3
TRIM28-212ENST00000597995 DNAJC5GQ8N7S2 189 aa16.93■□□□□ 0.3
TRIM28-212ENST00000597995 RNF181Q9P0P0 153 aa16.93■□□□□ 0.3
TRIM28-212ENST00000597995 COL15A1P39059 1388 aa16.92■□□□□ 0.3
TRIM28-212ENST00000597995 KCPQ6ZWJ8 1503 aa16.92■□□□□ 0.3
TRIM28-212ENST00000597995 C16orf71Q8IYS4 520 aaPredicted RBP16.92■□□□□ 0.3
TRIM28-212ENST00000597995 ZBTB1Q9Y2K1 713 aa16.92■□□□□ 0.3
TRIM28-212ENST00000597995 FSTL1Q12841 308 aa16.91■□□□□ 0.3
TRIM28-212ENST00000597995 BCL2L12Q9HB09 334 aa16.91■□□□□ 0.3
TRIM28-212ENST00000597995 STARD3NLO95772 234 aa16.9■□□□□ 0.3
TRIM28-212ENST00000597995 SERPINB2P05120 415 aa16.9■□□□□ 0.3
TRIM28-212ENST00000597995 VIRMAQ69YN4 1812 aaKnown RBP16.9■□□□□ 0.3
TRIM28-212ENST00000597995 ZC3H4Q9UPT8 1303 aaKnown RBP16.9■□□□□ 0.3
TRIM28-212ENST00000597995 SBF1O95248 1867 aa16.89■□□□□ 0.29
TRIM28-212ENST00000597995 CC2D1BQ5T0F9 858 aaKnown RBP16.89■□□□□ 0.29
TRIM28-212ENST00000597995 NRXN2Q9P2S2 1712 aa16.89■□□□□ 0.29
TRIM28-212ENST00000597995 AFDNP55196 1824 aaKnown RBP16.89■□□□□ 0.29
TRIM28-212ENST00000597995 A0A087WZG4 1122 aa16.88■□□□□ 0.29
TRIM28-212ENST00000597995 EIF5P55010 431 aaKnown RBP16.88■□□□□ 0.29
TRIM28-212ENST00000597995 TTC5Q8N0Z6 440 aa16.88■□□□□ 0.29
TRIM28-212ENST00000597995 RRAGCQ9HB90 399 aa16.88■□□□□ 0.29
TRIM28-212ENST00000597995 NPC1L1Q9UHC9 1359 aa16.88■□□□□ 0.29
TRIM28-212ENST00000597995 CANXP27824 592 aaKnown RBP16.87■□□□□ 0.29
TRIM28-212ENST00000597995 TTLL6Q8N841 843 aa16.87■□□□□ 0.29
TRIM28-212ENST00000597995 TEX13AQ9BXU3 409 aaPredicted RBP16.87■□□□□ 0.29
TRIM28-212ENST00000597995 UBR2Q8IWV8 1755 aa16.87■□□□□ 0.29
TRIM28-212ENST00000597995 GNAT3A8MTJ3 354 aa16.86■□□□□ 0.29
TRIM28-212ENST00000597995 H0YIN7 160 aa16.86■□□□□ 0.29
TRIM28-212ENST00000597995 LMNB1P20700 586 aa16.86■□□□□ 0.29
TRIM28-212ENST00000597995 GAS2L2Q8NHY3 880 aa16.86■□□□□ 0.29
TRIM28-212ENST00000597995 PDZRN3Q9UPQ7 1066 aa16.86■□□□□ 0.29
TRIM28-212ENST00000597995 RASSF7Q02833 373 aa16.85■□□□□ 0.29
TRIM28-212ENST00000597995 TEFQ10587 303 aa16.85■□□□□ 0.29
TRIM28-212ENST00000597995 ZNF790Q6PG37 636 aa16.85■□□□□ 0.29
TRIM28-212ENST00000597995 C2CD5Q86YS7 1000 aa16.85■□□□□ 0.29
TRIM28-212ENST00000597995 IL17REQ8NFR9 667 aa16.85■□□□□ 0.29
TRIM28-212ENST00000597995 ZNF496Q96IT1 587 aaPredicted RBP16.84■□□□□ 0.29
TRIM28-212ENST00000597995 HEG1Q9ULI3 1381 aa16.84■□□□□ 0.29
TRIM28-212ENST00000597995 COL3A1P02461 1466 aaPredicted RBP16.84■□□□□ 0.29
TRIM28-212ENST00000597995 TNRC6CQ9HCJ0 1690 aaKnown RBP16.84■□□□□ 0.29
TRIM28-212ENST00000597995 WDR90Q96KV7 1748 aa16.84■□□□□ 0.29
TRIM28-212ENST00000597995 DLEC1Q9Y238 1755 aa16.84■□□□□ 0.29
TRIM28-212ENST00000597995 GLTPD2A6NH11 291 aa16.83■□□□□ 0.28
TRIM28-212ENST00000597995 U2SURPO15042 1029 aaKnown RBP16.83■□□□□ 0.28
TRIM28-212ENST00000597995 IL6STP40189 918 aaPredicted RBP16.83■□□□□ 0.28
TRIM28-212ENST00000597995 SMC1BQ8NDV3 1235 aa16.83■□□□□ 0.28
TRIM28-212ENST00000597995 KLRG1Q96E93 195 aa16.83■□□□□ 0.28
TRIM28-212ENST00000597995 VEGFAP15692 232 aaPredicted RBP16.82■□□□□ 0.28
TRIM28-212ENST00000597995 TBC1D9BQ66K14 1250 aa16.82■□□□□ 0.28
TRIM28-212ENST00000597995 BICDL1Q6ZP65 573 aa16.82■□□□□ 0.28
TRIM28-212ENST00000597995 JMYQ8N9B5 988 aa16.82■□□□□ 0.28
TRIM28-212ENST00000597995 BRIP1Q9BX63 1249 aa16.82■□□□□ 0.28
TRIM28-212ENST00000597995 CARMIL3Q8ND23 1372 aa16.81■□□□□ 0.28
TRIM28-212ENST00000597995 PDE6BP35913 854 aa16.81■□□□□ 0.28
TRIM28-212ENST00000597995 PRELPP51888 382 aa16.81■□□□□ 0.28
TRIM28-212ENST00000597995 FMNL2Q96PY5 1086 aa16.81■□□□□ 0.28
TRIM28-212ENST00000597995 CEMIPQ8WUJ3 1361 aa16.8■□□□□ 0.28
TRIM28-212ENST00000597995 NFKBIEO00221 500 aa16.8■□□□□ 0.28
TRIM28-212ENST00000597995 TBC1D2BQ9UPU7 963 aa16.8■□□□□ 0.28
TRIM28-212ENST00000597995 HTRA3P83110 453 aa16.79■□□□□ 0.28
TRIM28-212ENST00000597995 PRR5LQ6MZQ0 368 aa16.79■□□□□ 0.28
TRIM28-212ENST00000597995 NPM2Q86SE8 214 aaKnown RBP16.79■□□□□ 0.28
TRIM28-212ENST00000597995 SIPA1L3O60292 1781 aaPredicted RBP16.79■□□□□ 0.28
TRIM28-212ENST00000597995 ZNF622Q969S3 477 aaKnown RBP eCLIP16.78■□□□□ 0.28
TRIM28-212ENST00000597995 BTBD11A6QL63 1104 aa16.77■□□□□ 0.28
TRIM28-212ENST00000597995 CAMTA2O94983 1202 aa16.77■□□□□ 0.28
TRIM28-212ENST00000597995 A1BGP04217 495 aa16.77■□□□□ 0.28
TRIM28-212ENST00000597995 DPY19L2Q6NUT2 758 aa16.77■□□□□ 0.28
TRIM28-212ENST00000597995 CFAP53Q96M91 514 aa16.77■□□□□ 0.28
TRIM28-212ENST00000597995 SETDB2Q96T68 719 aa16.77■□□□□ 0.28
TRIM28-212ENST00000597995 ZNF330Q9Y3S2 320 aaPredicted RBP16.77■□□□□ 0.28
TRIM28-212ENST00000597995 CCDC88AQ3V6T2 1871 aa16.76■□□□□ 0.27
TRIM28-212ENST00000597995 ANKRD31Q8N7Z5 1873 aa16.76■□□□□ 0.27
TRIM28-212ENST00000597995 SCN7AQ01118 1682 aa16.76■□□□□ 0.27
TRIM28-212ENST00000597995 PHACTR3Q96KR7 559 aa16.76■□□□□ 0.27
TRIM28-212ENST00000597995 RSPH6AQ9H0K4 717 aa16.76■□□□□ 0.27
TRIM28-212ENST00000597995 LTBP3Q9NS15 1303 aa16.75■□□□□ 0.27
TRIM28-212ENST00000597995 C21orf2O43822 256 aa16.75■□□□□ 0.27
TRIM28-212ENST00000597995 PRKAR2BP31323 418 aa16.75■□□□□ 0.27
TRIM28-212ENST00000597995 CNGB1Q14028 1251 aaPredicted RBP16.75■□□□□ 0.27
TRIM28-212ENST00000597995 STYK1Q6J9G0 422 aa16.75■□□□□ 0.27
TRIM28-212ENST00000597995 CNKSR1Q969H4 720 aa16.75■□□□□ 0.27
TRIM28-212ENST00000597995 NUDCQ9Y266 331 aa16.75■□□□□ 0.27
TRIM28-212ENST00000597995 POTECB2RU33 542 aa16.74■□□□□ 0.27
TRIM28-212ENST00000597995 KCNQ3O43525 872 aa16.74■□□□□ 0.27
TRIM28-212ENST00000597995 ST5P78524 1137 aa16.74■□□□□ 0.27
TRIM28-212ENST00000597995 ERFEQ4G0M1 354 aa16.74■□□□□ 0.27
TRIM28-212ENST00000597995 CLEC4GQ6UXB4 293 aa16.74■□□□□ 0.27
TRIM28-212ENST00000597995 DZIP3Q86Y13 1208 aaKnown RBP16.74■□□□□ 0.27
TRIM28-212ENST00000597995 CNBD1Q8NA66 436 aa16.74■□□□□ 0.27
TRIM28-212ENST00000597995 USP16Q9Y5T5 823 aa16.74■□□□□ 0.27
TRIM28-212ENST00000597995 TIAM2Q8IVF5 1701 aa16.73■□□□□ 0.27
TRIM28-212ENST00000597995 NPHP1O15259 732 aa16.73■□□□□ 0.27
TRIM28-212ENST00000597995 SRGNP10124 158 aa16.73■□□□□ 0.27
TRIM28-212ENST00000597995 SOGA3Q5TF21 947 aa16.73■□□□□ 0.27
TRIM28-212ENST00000597995 CCDC24Q8N4L8 307 aa16.73■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 492.6 ms