RNA–Protein interactions for RNA: ENST00000597649.5

SHKBP1-215, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 781 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-215ENST00000597649 NFIXQ14938 502 aa22.44■■□□□ 1.18
SHKBP1-215ENST00000597649 BCL2L12Q9HB09 334 aa22.44■■□□□ 1.18
SHKBP1-215ENST00000597649 KDM2BQ8NHM5 1336 aa22.43■■□□□ 1.18
SHKBP1-215ENST00000597649 RNMTO43148 476 aaKnown RBP22.43■■□□□ 1.18
SHKBP1-215ENST00000597649 RASSF7Q02833 373 aa22.43■■□□□ 1.18
SHKBP1-215ENST00000597649 KNSTRNQ9Y448 316 aa22.43■■□□□ 1.18
SHKBP1-215ENST00000597649 AMER1Q5JTC6 1135 aaPredicted RBP22.42■■□□□ 1.18
SHKBP1-215ENST00000597649 KLRG1Q96E93 195 aa22.42■■□□□ 1.18
SHKBP1-215ENST00000597649 NARFQ9UHQ1 456 aa22.42■■□□□ 1.18
SHKBP1-215ENST00000597649 ZBTB1Q9Y2K1 713 aa22.42■■□□□ 1.18
SHKBP1-215ENST00000597649 SCN11AQ9UI33 1791 aa22.4■■□□□ 1.18
SHKBP1-215ENST00000597649 HMOX1P09601 288 aa22.4■■□□□ 1.18
SHKBP1-215ENST00000597649 JMYQ8N9B5 988 aa22.4■■□□□ 1.18
SHKBP1-215ENST00000597649 SBF1O95248 1867 aa22.39■■□□□ 1.18
SHKBP1-215ENST00000597649 MTHFSDQ2M296 383 aaKnown RBP22.39■■□□□ 1.17
SHKBP1-215ENST00000597649 WDR90Q96KV7 1748 aa22.38■■□□□ 1.17
SHKBP1-215ENST00000597649 SERPINB2P05120 415 aa22.38■■□□□ 1.17
SHKBP1-215ENST00000597649 COL15A1P39059 1388 aa22.38■■□□□ 1.17
SHKBP1-215ENST00000597649 COL13A1Q5TAT6 717 aaPredicted RBP22.37■■□□□ 1.17
SHKBP1-215ENST00000597649 MRC1P22897 1456 aa22.35■■□□□ 1.17
SHKBP1-215ENST00000597649 LMNB1P20700 586 aa22.35■■□□□ 1.17
SHKBP1-215ENST00000597649 CANXP27824 592 aaKnown RBP22.35■■□□□ 1.17
SHKBP1-215ENST00000597649 VSIG10Q8N0Z9 540 aa22.35■■□□□ 1.17
SHKBP1-215ENST00000597649 TTLL6Q8N841 843 aa22.35■■□□□ 1.17
SHKBP1-215ENST00000597649 GLTPD2A6NH11 291 aa22.34■■□□□ 1.17
SHKBP1-215ENST00000597649 C2CD5Q86YS7 1000 aa22.34■■□□□ 1.17
SHKBP1-215ENST00000597649 SMC1BQ8NDV3 1235 aa22.34■■□□□ 1.17
SHKBP1-215ENST00000597649 CARMIL3Q8ND23 1372 aa22.34■■□□□ 1.17
SHKBP1-215ENST00000597649 AFDNP55196 1824 aaKnown RBP22.34■■□□□ 1.17
SHKBP1-215ENST00000597649 NFKBIEO00221 500 aa22.33■■□□□ 1.17
SHKBP1-215ENST00000597649 ZC3H4Q9UPT8 1303 aaKnown RBP22.32■■□□□ 1.16
SHKBP1-215ENST00000597649 NRXN2Q9P2S2 1712 aa22.32■■□□□ 1.16
SHKBP1-215ENST00000597649 EIF5P55010 431 aaKnown RBP22.32■■□□□ 1.16
SHKBP1-215ENST00000597649 BICDL1Q6ZP65 573 aa22.32■■□□□ 1.16
SHKBP1-215ENST00000597649 POTECB2RU33 542 aa22.31■■□□□ 1.16
SHKBP1-215ENST00000597649 PER1O15534 1290 aaPredicted RBP22.31■■□□□ 1.16
SHKBP1-215ENST00000597649 VEGFAP15692 232 aaPredicted RBP22.31■■□□□ 1.16
SHKBP1-215ENST00000597649 H0YIN7 160 aa22.3■■□□□ 1.16
SHKBP1-215ENST00000597649 DIAPH1O60610 1272 aaKnown RBP22.29■■□□□ 1.16
SHKBP1-215ENST00000597649 TBC1D9BQ66K14 1250 aa22.29■■□□□ 1.16
SHKBP1-215ENST00000597649 KIF7Q2M1P5 1343 aa22.29■■□□□ 1.16
SHKBP1-215ENST00000597649 TNRC6CQ9HCJ0 1690 aaKnown RBP22.28■■□□□ 1.16
SHKBP1-215ENST00000597649 STARD3NLO95772 234 aa22.28■■□□□ 1.16
SHKBP1-215ENST00000597649 CCDC24Q8N4L8 307 aa22.28■■□□□ 1.16
SHKBP1-215ENST00000597649 IL17REQ8NFR9 667 aa22.28■■□□□ 1.16
SHKBP1-215ENST00000597649 ZNF496Q96IT1 587 aaPredicted RBP22.28■■□□□ 1.16
SHKBP1-215ENST00000597649 ZEB1P37275 1124 aaPredicted RBP22.26■■□□□ 1.15
SHKBP1-215ENST00000597649 CC2D1BQ5T0F9 858 aaKnown RBP22.26■■□□□ 1.15
SHKBP1-215ENST00000597649 ZNF622Q969S3 477 aaKnown RBP eCLIP22.26■■□□□ 1.15
SHKBP1-215ENST00000597649 TBC1D2BQ9UPU7 963 aa22.26■■□□□ 1.15
SHKBP1-215ENST00000597649 A0A087WZG4 1122 aa22.25■■□□□ 1.15
SHKBP1-215ENST00000597649 TTC5Q8N0Z6 440 aa22.25■■□□□ 1.15
SHKBP1-215ENST00000597649 ZNF219Q9P2Y4 722 aaPredicted RBP22.25■■□□□ 1.15
SHKBP1-215ENST00000597649 C21orf2O43822 256 aa22.24■■□□□ 1.15
SHKBP1-215ENST00000597649 PRR5LQ6MZQ0 368 aa22.24■■□□□ 1.15
SHKBP1-215ENST00000597649 ZNF790Q6PG37 636 aa22.24■■□□□ 1.15
SHKBP1-215ENST00000597649 BRIP1Q9BX63 1249 aa22.24■■□□□ 1.15
SHKBP1-215ENST00000597649 DLEC1Q9Y238 1755 aa22.24■■□□□ 1.15
SHKBP1-215ENST00000597649 VIRMAQ69YN4 1812 aaKnown RBP22.23■■□□□ 1.15
SHKBP1-215ENST00000597649 UBR2Q8IWV8 1755 aa22.22■■□□□ 1.15
SHKBP1-215ENST00000597649 A1BGP04217 495 aa22.22■■□□□ 1.15
SHKBP1-215ENST00000597649 HEG1Q9ULI3 1381 aa22.22■■□□□ 1.15
SHKBP1-215ENST00000597649 PDE6BP35913 854 aa22.21■■□□□ 1.15
SHKBP1-215ENST00000597649 ZNF330Q9Y3S2 320 aaPredicted RBP22.21■■□□□ 1.15
SHKBP1-215ENST00000597649 CCDC88AQ3V6T2 1871 aa22.2■■□□□ 1.14
SHKBP1-215ENST00000597649 GNAT3A8MTJ3 354 aa22.2■■□□□ 1.14
SHKBP1-215ENST00000597649 KCNQ3O43525 872 aa22.2■■□□□ 1.14
SHKBP1-215ENST00000597649 IL6STP40189 918 aaPredicted RBP22.2■■□□□ 1.14
SHKBP1-215ENST00000597649 TEFQ10587 303 aa22.2■■□□□ 1.14
SHKBP1-215ENST00000597649 TEX13AQ9BXU3 409 aaPredicted RBP22.2■■□□□ 1.14
SHKBP1-215ENST00000597649 ANKRD31Q8N7Z5 1873 aa22.2■■□□□ 1.14
SHKBP1-215ENST00000597649 U2SURPO15042 1029 aaKnown RBP22.19■■□□□ 1.14
SHKBP1-215ENST00000597649 CAPN15O75808 1086 aa22.19■■□□□ 1.14
SHKBP1-215ENST00000597649 CAMTA2O94983 1202 aa22.19■■□□□ 1.14
SHKBP1-215ENST00000597649 ERFEQ4G0M1 354 aa22.19■■□□□ 1.14
SHKBP1-215ENST00000597649 DPY19L2Q6NUT2 758 aa22.19■■□□□ 1.14
SHKBP1-215ENST00000597649 TNS4Q8IZW8 715 aa22.19■■□□□ 1.14
SHKBP1-215ENST00000597649 PDZRN3Q9UPQ7 1066 aa22.19■■□□□ 1.14
SHKBP1-215ENST00000597649 COL3A1P02461 1466 aaPredicted RBP22.18■■□□□ 1.14
SHKBP1-215ENST00000597649 HSPA1AP0DMV8 641 aaKnown RBP22.18■■□□□ 1.14
SHKBP1-215ENST00000597649 HSPA1BP0DMV9 641 aaKnown RBP22.18■■□□□ 1.14
SHKBP1-215ENST00000597649 CNGB1Q14028 1251 aaPredicted RBP22.18■■□□□ 1.14
SHKBP1-215ENST00000597649 GAS2L2Q8NHY3 880 aa22.17■■□□□ 1.14
SHKBP1-215ENST00000597649 PHACTR3Q96KR7 559 aa22.17■■□□□ 1.14
SHKBP1-215ENST00000597649 FMNL2Q96PY5 1086 aa22.17■■□□□ 1.14
SHKBP1-215ENST00000597649 SETDB2Q96T68 719 aa22.17■■□□□ 1.14
SHKBP1-215ENST00000597649 POTEIP0CG38 1075 aa22.16■■□□□ 1.14
SHKBP1-215ENST00000597649 POTEJP0CG39 1038 aa22.16■■□□□ 1.14
SHKBP1-215ENST00000597649 USP16Q9Y5T5 823 aa22.16■■□□□ 1.14
SHKBP1-215ENST00000597649 TIAM2Q8IVF5 1701 aa22.16■■□□□ 1.14
SHKBP1-215ENST00000597649 LTBP3Q9NS15 1303 aa22.15■■□□□ 1.14
SHKBP1-215ENST00000597649 DDNO94850 711 aaPredicted RBP22.15■■□□□ 1.14
SHKBP1-215ENST00000597649 SRGNP10124 158 aa22.15■■□□□ 1.14
SHKBP1-215ENST00000597649 CEMIPQ8WUJ3 1361 aa22.14■■□□□ 1.14
SHKBP1-215ENST00000597649 PIP4K2AP48426 406 aaPredicted RBP22.14■■□□□ 1.13
SHKBP1-215ENST00000597649 STYK1Q6J9G0 422 aa22.14■■□□□ 1.13
SHKBP1-215ENST00000597649 PRPF40BQ6NWY9 871 aaKnown RBP22.14■■□□□ 1.13
SHKBP1-215ENST00000597649 CNBD1Q8NA66 436 aa22.14■■□□□ 1.13
SHKBP1-215ENST00000597649 TAOK3Q9H2K8 898 aa22.14■■□□□ 1.13
SHKBP1-215ENST00000597649 COL11A2P13942 1736 aaPredicted RBP22.14■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms