RNA–Protein interactions for RNA: ENST00000597618.5

TRIM28-210, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 609 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-210ENST00000597618 TIAM2Q8IVF5 1701 aa13.91□□□□□ -0.18
TRIM28-210ENST00000597618 AEBP1Q8IUX7 1158 aa13.91□□□□□ -0.18
TRIM28-210ENST00000597618 DNAJC10Q8IXB1 793 aa13.91□□□□□ -0.18
TRIM28-210ENST00000597618 NARFQ9UHQ1 456 aa13.91□□□□□ -0.18
TRIM28-210ENST00000597618 COL15A1P39059 1388 aa13.91□□□□□ -0.18
TRIM28-210ENST00000597618 NRXN2Q9P2S2 1712 aa13.9□□□□□ -0.18
TRIM28-210ENST00000597618 NFKBIEO00221 500 aa13.9□□□□□ -0.18
TRIM28-210ENST00000597618 DPY19L2Q6NUT2 758 aa13.9□□□□□ -0.18
TRIM28-210ENST00000597618 C2CD5Q86YS7 1000 aa13.9□□□□□ -0.18
TRIM28-210ENST00000597618 DLEC1Q9Y238 1755 aa13.9□□□□□ -0.18
TRIM28-210ENST00000597618 H0YIN7 160 aa13.89□□□□□ -0.19
TRIM28-210ENST00000597618 SERPINB2P05120 415 aa13.89□□□□□ -0.19
TRIM28-210ENST00000597618 CYP19A1P11511 503 aaPredicted RBP13.89□□□□□ -0.19
TRIM28-210ENST00000597618 SLC52A2Q9HAB3 445 aa13.89□□□□□ -0.19
TRIM28-210ENST00000597618 AKAP4Q5JQC9 854 aa13.88□□□□□ -0.19
TRIM28-210ENST00000597618 SULT6B1Q6IMI4 303 aa13.88□□□□□ -0.19
TRIM28-210ENST00000597618 POLR3GLQ9BT43 218 aa13.88□□□□□ -0.19
TRIM28-210ENST00000597618 CREBZFQ9NS37 354 aa13.88□□□□□ -0.19
TRIM28-210ENST00000597618 MRC1P22897 1456 aa13.87□□□□□ -0.19
TRIM28-210ENST00000597618 CARMIL3Q8ND23 1372 aa13.87□□□□□ -0.19
TRIM28-210ENST00000597618 POTECB2RU33 542 aa13.87□□□□□ -0.19
TRIM28-210ENST00000597618 ZBTB1Q9Y2K1 713 aa13.87□□□□□ -0.19
TRIM28-210ENST00000597618 AFDNP55196 1824 aaKnown RBP13.87□□□□□ -0.19
TRIM28-210ENST00000597618 SCN11AQ9UI33 1791 aa13.86□□□□□ -0.19
TRIM28-210ENST00000597618 ERFEQ4G0M1 354 aa13.86□□□□□ -0.19
TRIM28-210ENST00000597618 CHADLQ6NUI6 762 aa13.86□□□□□ -0.19
TRIM28-210ENST00000597618 BCL2L12Q9HB09 334 aa13.86□□□□□ -0.19
TRIM28-210ENST00000597618 PDZRN3Q9UPQ7 1066 aa13.86□□□□□ -0.19
TRIM28-210ENST00000597618 VSIG10Q8N0Z9 540 aa13.85□□□□□ -0.19
TRIM28-210ENST00000597618 MKRN1Q9UHC7 482 aaKnown RBP13.85□□□□□ -0.19
TRIM28-210ENST00000597618 PDE6BP35913 854 aa13.84□□□□□ -0.19
TRIM28-210ENST00000597618 SLC39A6Q13433 755 aa13.84□□□□□ -0.19
TRIM28-210ENST00000597618 MORC1Q86VD1 984 aa13.84□□□□□ -0.19
TRIM28-210ENST00000597618 LTBP3Q9NS15 1303 aa13.84□□□□□ -0.19
TRIM28-210ENST00000597618 A0A087WZG4 1122 aa13.83□□□□□ -0.2
TRIM28-210ENST00000597618 RNMTO43148 476 aaKnown RBP13.83□□□□□ -0.2
TRIM28-210ENST00000597618 C21orf2O43822 256 aa13.83□□□□□ -0.2
TRIM28-210ENST00000597618 IL13P35225 146 aa13.83□□□□□ -0.2
TRIM28-210ENST00000597618 BICDL1Q6ZP65 573 aa13.83□□□□□ -0.2
TRIM28-210ENST00000597618 ZNF622Q969S3 477 aaKnown RBP eCLIP13.83□□□□□ -0.2
TRIM28-210ENST00000597618 BRIP1Q9BX63 1249 aa13.83□□□□□ -0.2
TRIM28-210ENST00000597618 TAOK3Q9H2K8 898 aa13.83□□□□□ -0.2
TRIM28-210ENST00000597618 PANK3Q9H999 370 aa13.83□□□□□ -0.2
TRIM28-210ENST00000597618 LGR6Q9HBX8 967 aa13.83□□□□□ -0.2
TRIM28-210ENST00000597618 PRDM10Q9NQV6 1147 aa13.83□□□□□ -0.2
TRIM28-210ENST00000597618 CNTNAP1P78357 1384 aa13.83□□□□□ -0.2
TRIM28-210ENST00000597618 STARD3NLO95772 234 aa13.82□□□□□ -0.2
TRIM28-210ENST00000597618 CANXP27824 592 aaKnown RBP13.82□□□□□ -0.2
TRIM28-210ENST00000597618 AIDAQ96BJ3 306 aa13.82□□□□□ -0.2
TRIM28-210ENST00000597618 IQCA1LA6NCM1 817 aa13.81□□□□□ -0.2
TRIM28-210ENST00000597618 FOXN1O15353 648 aa13.81□□□□□ -0.2
TRIM28-210ENST00000597618 EIF5P55010 431 aaKnown RBP13.81□□□□□ -0.2
TRIM28-210ENST00000597618 SOGA3Q5TF21 947 aa13.81□□□□□ -0.2
TRIM28-210ENST00000597618 ZNF219Q9P2Y4 722 aaPredicted RBP13.81□□□□□ -0.2
TRIM28-210ENST00000597618 TIMELESSQ9UNS1 1208 aa13.81□□□□□ -0.2
TRIM28-210ENST00000597618 DDNO94850 711 aaPredicted RBP13.8□□□□□ -0.2
TRIM28-210ENST00000597618 POTEIP0CG38 1075 aa13.8□□□□□ -0.2
TRIM28-210ENST00000597618 POTEJP0CG39 1038 aa13.8□□□□□ -0.2
TRIM28-210ENST00000597618 CTCFP49711 727 aaPredicted RBP13.8□□□□□ -0.2
TRIM28-210ENST00000597618 TBC1D9BQ66K14 1250 aa13.8□□□□□ -0.2
TRIM28-210ENST00000597618 PRR5LQ6MZQ0 368 aa13.8□□□□□ -0.2
TRIM28-210ENST00000597618 LDHDQ86WU2 507 aa13.8□□□□□ -0.2
TRIM28-210ENST00000597618 TTC5Q8N0Z6 440 aa13.8□□□□□ -0.2
TRIM28-210ENST00000597618 PASKQ96RG2 1323 aa13.8□□□□□ -0.2
TRIM28-210ENST00000597618 CCDC88AQ3V6T2 1871 aa13.8□□□□□ -0.2
TRIM28-210ENST00000597618 CNKSR1Q969H4 720 aa13.79□□□□□ -0.2
TRIM28-210ENST00000597618 DICER1Q9UPY3 1922 aaKnown RBP13.79□□□□□ -0.2
TRIM28-210ENST00000597618 SCN7AQ01118 1682 aa13.79□□□□□ -0.2
TRIM28-210ENST00000597618 COL11A2P13942 1736 aaPredicted RBP13.78□□□□□ -0.2
TRIM28-210ENST00000597618 FER1L6Q2WGJ9 1857 aa13.78□□□□□ -0.2
TRIM28-210ENST00000597618 STYK1Q6J9G0 422 aa13.78□□□□□ -0.2
TRIM28-210ENST00000597618 CNBD1Q8NA66 436 aa13.78□□□□□ -0.2
TRIM28-210ENST00000597618 L3MBTL3Q96JM7 780 aaPredicted RBP13.78□□□□□ -0.2
TRIM28-210ENST00000597618 UBR2Q8IWV8 1755 aa13.78□□□□□ -0.2
TRIM28-210ENST00000597618 ANKRD31Q8N7Z5 1873 aa13.78□□□□□ -0.2
TRIM28-210ENST00000597618 TMEM88BA6NKF7 163 aa13.77□□□□□ -0.21
TRIM28-210ENST00000597618 NPHP1O15259 732 aa13.77□□□□□ -0.21
TRIM28-210ENST00000597618 ST5P78524 1137 aa13.77□□□□□ -0.21
TRIM28-210ENST00000597618 PRPF40BQ6NWY9 871 aaKnown RBP13.77□□□□□ -0.21
TRIM28-210ENST00000597618 HMOX1P09601 288 aa13.76□□□□□ -0.21
TRIM28-210ENST00000597618 VEGFBP49765 207 aa13.76□□□□□ -0.21
TRIM28-210ENST00000597618 MTHFSDQ2M296 383 aaKnown RBP13.76□□□□□ -0.21
TRIM28-210ENST00000597618 NPM2Q86SE8 214 aaKnown RBP13.76□□□□□ -0.21
TRIM28-210ENST00000597618 CCDC24Q8N4L8 307 aa13.76□□□□□ -0.21
TRIM28-210ENST00000597618 MASTLQ96GX5 879 aa13.76□□□□□ -0.21
TRIM28-210ENST00000597618 SETDB2Q96T68 719 aa13.76□□□□□ -0.21
TRIM28-210ENST00000597618 TEX13AQ9BXU3 409 aaPredicted RBP13.76□□□□□ -0.21
TRIM28-210ENST00000597618 TAF1DQ9H5J8 278 aaPredicted RBP13.76□□□□□ -0.21
TRIM28-210ENST00000597618 ZNF330Q9Y3S2 320 aaPredicted RBP13.76□□□□□ -0.21
TRIM28-210ENST00000597618 KNSTRNQ9Y448 316 aa13.76□□□□□ -0.21
TRIM28-210ENST00000597618 HEG1Q9ULI3 1381 aa13.75□□□□□ -0.21
TRIM28-210ENST00000597618 SLC34A2O95436 690 aa13.75□□□□□ -0.21
TRIM28-210ENST00000597618 SRGNP10124 158 aa13.75□□□□□ -0.21
TRIM28-210ENST00000597618 IL6STP40189 918 aaPredicted RBP13.75□□□□□ -0.21
TRIM28-210ENST00000597618 EIF4G2P78344 907 aaKnown RBP eCLIP13.75□□□□□ -0.21
TRIM28-210ENST00000597618 WBP1LQ9NX94 342 aa13.75□□□□□ -0.21
TRIM28-210ENST00000597618 TBC1D2BQ9UPU7 963 aa13.75□□□□□ -0.21
TRIM28-210ENST00000597618 CCDC93Q567U6 631 aa13.74□□□□□ -0.21
TRIM28-210ENST00000597618 ZNF496Q96IT1 587 aaPredicted RBP13.74□□□□□ -0.21
TRIM28-210ENST00000597618 SCN4AP35499 1836 aa13.74□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 131.2 ms