RNA–Protein interactions for RNA: ENST00000590454.2

R3HDM4-206, Transcript of R3H domain containing 4, humanhuman

TSL 3

Gene R3HDM4, Length 1,006 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
R3HDM4-206ENST00000590454 KIF13BQ9NQT8 1826 aa28.36■■■□□ 2.13
R3HDM4-206ENST00000590454 NEFMP07197 916 aa28.35■■■□□ 2.13
R3HDM4-206ENST00000590454 RFC4P35249 363 aa28.35■■■□□ 2.13
R3HDM4-206ENST00000590454 IL17REQ8NFR9 667 aa28.35■■■□□ 2.13
R3HDM4-206ENST00000590454 PARP3Q9Y6F1 533 aa28.35■■■□□ 2.13
R3HDM4-206ENST00000590454 ERVV-2B6SEH9 535 aa28.34■■■□□ 2.13
R3HDM4-206ENST00000590454 GYS1P13807 737 aa28.34■■■□□ 2.13
R3HDM4-206ENST00000590454 SLC4A9Q96Q91 983 aa28.34■■■□□ 2.13
R3HDM4-206ENST00000590454 KIAA1551Q9HCM1 1747 aa28.33■■■□□ 2.13
R3HDM4-206ENST00000590454 RPS6KA4O75676 772 aa28.33■■■□□ 2.13
R3HDM4-206ENST00000590454 TMPOP42166 694 aaKnown RBP28.33■■■□□ 2.13
R3HDM4-206ENST00000590454 DCTN1Q14203 1278 aa28.33■■■□□ 2.13
R3HDM4-206ENST00000590454 N4BP2Q86UW6 1770 aaPredicted RBP28.32■■■□□ 2.12
R3HDM4-206ENST00000590454 MCM10Q7L590 875 aa28.32■■■□□ 2.12
R3HDM4-206ENST00000590454 RBM46Q8TBY0 533 aaKnown RBP28.32■■■□□ 2.12
R3HDM4-206ENST00000590454 CNTNAP4Q9C0A0 1308 aa28.32■■■□□ 2.12
R3HDM4-206ENST00000590454 C16orf71Q8IYS4 520 aaPredicted RBP28.31■■■□□ 2.12
R3HDM4-206ENST00000590454 APAF1O14727 1248 aa28.3■■■□□ 2.12
R3HDM4-206ENST00000590454 CABP4P57796 275 aa28.3■■■□□ 2.12
R3HDM4-206ENST00000590454 NEUROD2Q15784 382 aa28.3■■■□□ 2.12
R3HDM4-206ENST00000590454 C9orf131Q5VYM1 1079 aa28.3■■■□□ 2.12
R3HDM4-206ENST00000590454 NFATC2IPQ8NCF5 419 aa28.3■■■□□ 2.12
R3HDM4-206ENST00000590454 KCNA3P22001 575 aa28.29■■■□□ 2.12
R3HDM4-206ENST00000590454 RIPK4P57078 832 aa28.29■■■□□ 2.12
R3HDM4-206ENST00000590454 THUMPD2Q9BTF0 503 aaKnown RBP28.28■■■□□ 2.12
R3HDM4-206ENST00000590454 PIM2Q9P1W9 311 aa28.28■■■□□ 2.12
R3HDM4-206ENST00000590454 MRC1P22897 1456 aa28.27■■■□□ 2.12
R3HDM4-206ENST00000590454 CEMIPQ8WUJ3 1361 aa28.27■■■□□ 2.12
R3HDM4-206ENST00000590454 C4AP0C0L4 1744 aa28.27■■■□□ 2.12
R3HDM4-206ENST00000590454 SLC52A2Q9HAB3 445 aa28.27■■■□□ 2.12
R3HDM4-206ENST00000590454 ZNF831Q5JPB2 1677 aa28.26■■■□□ 2.12
R3HDM4-206ENST00000590454 FSTL1Q12841 308 aa28.26■■■□□ 2.11
R3HDM4-206ENST00000590454 RTF1Q92541 710 aaKnown RBP28.25■■■□□ 2.11
R3HDM4-206ENST00000590454 KDM2BQ8NHM5 1336 aa28.24■■■□□ 2.11
R3HDM4-206ENST00000590454 HTATSF1O43719 755 aaKnown RBP28.24■■■□□ 2.11
R3HDM4-206ENST00000590454 DALRD3Q5D0E6 543 aaKnown RBP28.24■■■□□ 2.11
R3HDM4-206ENST00000590454 KLRG1Q96E93 195 aa28.24■■■□□ 2.11
R3HDM4-206ENST00000590454 TRIM35Q9UPQ4 493 aa28.24■■■□□ 2.11
R3HDM4-206ENST00000590454 SIPA1L3O60292 1781 aaPredicted RBP28.24■■■□□ 2.11
R3HDM4-206ENST00000590454 TEFQ10587 303 aa28.2■■■□□ 2.1
R3HDM4-206ENST00000590454 JMYQ8N9B5 988 aa28.2■■■□□ 2.1
R3HDM4-206ENST00000590454 RNF181Q9P0P0 153 aa28.2■■■□□ 2.1
R3HDM4-206ENST00000590454 COL5A3P25940 1745 aaPredicted RBP28.19■■■□□ 2.1
R3HDM4-206ENST00000590454 WDR90Q96KV7 1748 aa28.19■■■□□ 2.1
R3HDM4-206ENST00000590454 PTCD1O75127 700 aaKnown RBP28.19■■■□□ 2.1
R3HDM4-206ENST00000590454 CRKLP46109 303 aaKnown RBP28.19■■■□□ 2.1
R3HDM4-206ENST00000590454 HTRA3P83110 453 aa28.19■■■□□ 2.1
R3HDM4-206ENST00000590454 SLC39A6Q13433 755 aa28.19■■■□□ 2.1
R3HDM4-206ENST00000590454 BRCA1P38398 1863 aaKnown RBP28.19■■■□□ 2.1
R3HDM4-206ENST00000590454 FKBP8Q14318 412 aa28.18■■■□□ 2.1
R3HDM4-206ENST00000590454 RRAGCQ9HB90 399 aa28.18■■■□□ 2.1
R3HDM4-206ENST00000590454 SRP68Q9UHB9 627 aaKnown RBP28.18■■■□□ 2.1
R3HDM4-206ENST00000590454 KCPQ6ZWJ8 1503 aa28.17■■■□□ 2.1
R3HDM4-206ENST00000590454 USP42Q9H9J4 1324 aaKnown RBP28.17■■■□□ 2.1
R3HDM4-206ENST00000590454 DDR1Q08345 913 aa28.16■■■□□ 2.1
R3HDM4-206ENST00000590454 ARFGEF1Q9Y6D6 1849 aa28.15■■■□□ 2.1
R3HDM4-206ENST00000590454 LMOD3Q0VAK6 560 aa28.15■■■□□ 2.1
R3HDM4-206ENST00000590454 MIS18AQ9NYP9 233 aa28.15■■■□□ 2.1
R3HDM4-206ENST00000590454 SALL2Q9Y467 1007 aaPredicted RBP28.15■■■□□ 2.1
R3HDM4-206ENST00000590454 KCNQ3O43525 872 aa28.14■■■□□ 2.1
R3HDM4-206ENST00000590454 CHRNA5P30532 468 aa28.14■■■□□ 2.1
R3HDM4-206ENST00000590454 COL13A1Q5TAT6 717 aaPredicted RBP28.14■■■□□ 2.1
R3HDM4-206ENST00000590454 MYH14Q7Z406 1995 aaKnown RBP28.12■■■□□ 2.09
R3HDM4-206ENST00000590454 BTBD11A6QL63 1104 aa28.12■■■□□ 2.09
R3HDM4-206ENST00000590454 TAF7Q15545 349 aaPredicted RBP28.12■■■□□ 2.09
R3HDM4-206ENST00000590454 SMC1BQ8NDV3 1235 aa28.12■■■□□ 2.09
R3HDM4-206ENST00000590454 TM4SF1P30408 202 aa28.11■■■□□ 2.09
R3HDM4-206ENST00000590454 POLRMTO00411 1230 aaKnown RBP28.1■■■□□ 2.09
R3HDM4-206ENST00000590454 ZPR1O75312 459 aa28.09■■■□□ 2.09
R3HDM4-206ENST00000590454 INTS5Q6P9B9 1019 aaKnown RBP28.09■■■□□ 2.09
R3HDM4-206ENST00000590454 ZNF790Q6PG37 636 aa28.09■■■□□ 2.09
R3HDM4-206ENST00000590454 UBR2Q8IWV8 1755 aa28.09■■■□□ 2.09
R3HDM4-206ENST00000590454 ZC3H4Q9UPT8 1303 aaKnown RBP28.08■■■□□ 2.09
R3HDM4-206ENST00000590454 WWC1Q8IX03 1113 aa28.07■■■□□ 2.08
R3HDM4-206ENST00000590454 CCDC27Q2M243 656 aa28.06■■■□□ 2.08
R3HDM4-206ENST00000590454 ZNF496Q96IT1 587 aaPredicted RBP28.06■■■□□ 2.08
R3HDM4-206ENST00000590454 KDM3BQ7LBC6 1761 aa28.06■■■□□ 2.08
R3HDM4-206ENST00000590454 USPL1Q5W0Q7 1092 aa28.05■■■□□ 2.08
R3HDM4-206ENST00000590454 TNS4Q8IZW8 715 aa28.04■■■□□ 2.08
R3HDM4-206ENST00000590454 TTC5Q8N0Z6 440 aa28.04■■■□□ 2.08
R3HDM4-206ENST00000590454 LAS1LQ9Y4W2 734 aaKnown RBP28.04■■■□□ 2.08
R3HDM4-206ENST00000590454 TNRC6CQ9HCJ0 1690 aaKnown RBP28.03■■■□□ 2.08
R3HDM4-206ENST00000590454 TJP1Q07157 1748 aa28.03■■■□□ 2.08
R3HDM4-206ENST00000590454 VEGFAP15692 232 aaPredicted RBP28.02■■■□□ 2.08
R3HDM4-206ENST00000590454 LMNB1P20700 586 aa28.02■■■□□ 2.08
R3HDM4-206ENST00000590454 RASSF7Q02833 373 aa28.02■■■□□ 2.08
R3HDM4-206ENST00000590454 NCBP3Q53F19 620 aaKnown RBP28.02■■■□□ 2.08
R3HDM4-206ENST00000590454 DNAJC10Q8IXB1 793 aa28.02■■■□□ 2.08
R3HDM4-206ENST00000590454 SOS1Q07889 1333 aaPredicted RBP28.01■■■□□ 2.07
R3HDM4-206ENST00000590454 GLTPD2A6NH11 291 aa28.01■■■□□ 2.07
R3HDM4-206ENST00000590454 CHL1O00533 1208 aa28.01■■■□□ 2.07
R3HDM4-206ENST00000590454 CAPN15O75808 1086 aa28.01■■■□□ 2.07
R3HDM4-206ENST00000590454 TSPYL4Q9UJ04 414 aa28.01■■■□□ 2.07
R3HDM4-206ENST00000590454 ZNF853P0CG23 659 aa28■■■□□ 2.07
R3HDM4-206ENST00000590454 NFIXQ14938 502 aa27.99■■■□□ 2.07
R3HDM4-206ENST00000590454 NARFQ9UHQ1 456 aa27.99■■■□□ 2.07
R3HDM4-206ENST00000590454 SBF1O95248 1867 aa27.99■■■□□ 2.07
R3HDM4-206ENST00000590454 HEG1Q9ULI3 1381 aa27.99■■■□□ 2.07
R3HDM4-206ENST00000590454 PRAMEF22A3QJZ6 481 aa27.98■■■□□ 2.07
R3HDM4-206ENST00000590454 FMNL2Q96PY5 1086 aa27.98■■■□□ 2.07
Retrieved 100 of 20,778 RNA–protein pairs in 114.8 ms