RNA–Protein interactions for RNA: ENST00000582594.5

PPP4R1-222, Transcript of protein phosphatase 4 regulatory subunit 1, human

TSL 1 (best)

Gene PPP4R1, Length 2,982 nt, Biotype retained intron, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PPP4R1-222	ENST00000582594	ZSCAN20	P17040	1043 aa	Predicted RBP	11.5	□□□□□ -0.57
PPP4R1-222	ENST00000582594	RASEF	Q8IZ41	740 aa		11.5	□□□□□ -0.57
PPP4R1-222	ENST00000582594	KCNF1	Q9H3M0	494 aa		11.5	□□□□□ -0.57
PPP4R1-222	ENST00000582594	SMC3	Q9UQE7	1217 aa		11.5	□□□□□ -0.57
PPP4R1-222	ENST00000582594	SNX14	Q9Y5W7	946 aa		11.5	□□□□□ -0.57
PPP4R1-222	ENST00000582594	CRB1	P82279	1406 aa		11.5	□□□□□ -0.57
PPP4R1-222	ENST00000582594	UBE2H	P62256	183 aa		11.49	□□□□□ -0.57
PPP4R1-222	ENST00000582594	DNM1	Q05193	864 aa	Known RBP	11.49	□□□□□ -0.57
PPP4R1-222	ENST00000582594	DMTN	Q08495	405 aa		11.49	□□□□□ -0.57
PPP4R1-222	ENST00000582594	MTHFSD	Q2M296	383 aa	Known RBP	11.49	□□□□□ -0.57
PPP4R1-222	ENST00000582594	TUBGCP6	Q96RT7	1819 aa		11.49	□□□□□ -0.57
PPP4R1-222	ENST00000582594	F13A1	P00488	732 aa		11.49	□□□□□ -0.57
PPP4R1-222	ENST00000582594	FLII	Q13045	1269 aa		11.49	□□□□□ -0.57
PPP4R1-222	ENST00000582594	RUFY3	Q7L099	469 aa		11.49	□□□□□ -0.57
PPP4R1-222	ENST00000582594	CCDC83	Q8IWF9	413 aa		11.49	□□□□□ -0.57
PPP4R1-222	ENST00000582594	SPG7	Q9UQ90	795 aa		11.49	□□□□□ -0.57
PPP4R1-222	ENST00000582594	CCDC61	Q9Y6R9	512 aa		11.49	□□□□□ -0.57
PPP4R1-222	ENST00000582594	RIOK3	O14730	519 aa	Known RBP	11.49	□□□□□ -0.57
PPP4R1-222	ENST00000582594	TMEM87A	Q8NBN3	555 aa		11.49	□□□□□ -0.57
PPP4R1-222	ENST00000582594	GNAI3	P08754	354 aa		11.48	□□□□□ -0.57
PPP4R1-222	ENST00000582594	BCL11B	Q9C0K0	894 aa	Predicted RBP	11.48	□□□□□ -0.57
PPP4R1-222	ENST00000582594	SPTLC3	Q9NUV7	552 aa		11.48	□□□□□ -0.57
PPP4R1-222	ENST00000582594	STAP2	Q9UGK3	403 aa		11.48	□□□□□ -0.57
PPP4R1-222	ENST00000582594	IGSF3	O75054	1194 aa		11.48	□□□□□ -0.57
PPP4R1-222	ENST00000582594	GTF2F1	P35269	517 aa	Known RBP eCLIP	11.48	□□□□□ -0.57
PPP4R1-222	ENST00000582594	CWC27	Q6UX04	472 aa	Known RBP	11.48	□□□□□ -0.57
PPP4R1-222	ENST00000582594	SSH2	Q76I76	1423 aa		11.48	□□□□□ -0.57
PPP4R1-222	ENST00000582594	RIMS1	Q86UR5	1692 aa	Known RBP	11.48	□□□□□ -0.57
PPP4R1-222	ENST00000582594	VPS37C	A5D8V6	355 aa	Predicted RBP	11.47	□□□□□ -0.57
PPP4R1-222	ENST00000582594	SURF6	O75683	361 aa	Known RBP	11.47	□□□□□ -0.57
PPP4R1-222	ENST00000582594	LETM1	O95202	739 aa	Predicted RBP	11.47	□□□□□ -0.57
PPP4R1-222	ENST00000582594	PDCL2	Q8N4E4	241 aa		11.47	□□□□□ -0.57
PPP4R1-222	ENST00000582594	MAP3K19	Q56UN5	1328 aa		11.47	□□□□□ -0.57
PPP4R1-222	ENST00000582594	PRR36	Q9H6K5	1346 aa		11.47	□□□□□ -0.57
PPP4R1-222	ENST00000582594	CAST	P20810	708 aa	Known RBP	11.47	□□□□□ -0.57
PPP4R1-222	ENST00000582594	U2AF2	P26368	475 aa	Known RBP eCLIP	11.47	□□□□□ -0.57
PPP4R1-222	ENST00000582594	GJB2	P29033	226 aa		11.47	□□□□□ -0.57
PPP4R1-222	ENST00000582594	KIAA1524	Q8TCG1	905 aa		11.47	□□□□□ -0.57
PPP4R1-222	ENST00000582594	FUCA2	Q9BTY2	467 aa		11.47	□□□□□ -0.57
PPP4R1-222	ENST00000582594	PLEKHG5	O94827	1062 aa		11.46	□□□□□ -0.57
PPP4R1-222	ENST00000582594	CAMK4	Q16566	473 aa		11.46	□□□□□ -0.57
PPP4R1-222	ENST00000582594	TTC14	Q96N46	770 aa		11.46	□□□□□ -0.57
PPP4R1-222	ENST00000582594	LIMCH1	Q9UPQ0	1083 aa		11.46	□□□□□ -0.57
PPP4R1-222	ENST00000582594	FER1L4	A9Z1Z3	1794 aa		11.46	□□□□□ -0.57
PPP4R1-222	ENST00000582594	MET	P08581	1390 aa		11.46	□□□□□ -0.57
PPP4R1-222	ENST00000582594	RAD50	Q92878	1312 aa		11.46	□□□□□ -0.57
PPP4R1-222	ENST00000582594	SGSM2	O43147	1006 aa		11.46	□□□□□ -0.57
PPP4R1-222	ENST00000582594	ZSCAN21	Q9Y5A6	473 aa	Predicted RBP	11.46	□□□□□ -0.57
PPP4R1-222	ENST00000582594	UBTFL1	P0CB47	393 aa	Predicted RBP	11.46	□□□□□ -0.58
PPP4R1-222	ENST00000582594	PTGS1	P23219	599 aa		11.46	□□□□□ -0.58
PPP4R1-222	ENST00000582594	CHAF1A	Q13111	956 aa	Predicted RBP	11.46	□□□□□ -0.58
PPP4R1-222	ENST00000582594	LSG1	Q9H089	658 aa	Known RBP	11.46	□□□□□ -0.58
PPP4R1-222	ENST00000582594	FAM173B	Q6P4H8	233 aa		11.45	□□□□□ -0.58
PPP4R1-222	ENST00000582594	USP44	Q9H0E7	712 aa		11.45	□□□□□ -0.58
PPP4R1-222	ENST00000582594	TTC21B	Q7Z4L5	1316 aa		11.45	□□□□□ -0.58
PPP4R1-222	ENST00000582594	DLC1	Q96QB1	1528 aa		11.45	□□□□□ -0.58
PPP4R1-222	ENST00000582594		A0A0U1RQG5	324 aa	Predicted RBP	11.45	□□□□□ -0.58
PPP4R1-222	ENST00000582594	MLEC	Q14165	292 aa		11.45	□□□□□ -0.58
PPP4R1-222	ENST00000582594	PPP1R42	Q7Z4L9	355 aa		11.45	□□□□□ -0.58
PPP4R1-222	ENST00000582594	FERMT3	Q86UX7	667 aa		11.45	□□□□□ -0.58
PPP4R1-222	ENST00000582594	NECAB1	Q8N987	351 aa		11.45	□□□□□ -0.58
PPP4R1-222	ENST00000582594	PI4K2B	Q8TCG2	481 aa		11.45	□□□□□ -0.58
PPP4R1-222	ENST00000582594	ADCK5	Q3MIX3	580 aa		11.44	□□□□□ -0.58
PPP4R1-222	ENST00000582594	UTP14C	Q5TAP6	766 aa	Known RBP	11.44	□□□□□ -0.58
PPP4R1-222	ENST00000582594	MTMR6	Q9Y217	621 aa		11.44	□□□□□ -0.58
PPP4R1-222	ENST00000582594	CCDC30	Q5VVM6	783 aa		11.44	□□□□□ -0.58
PPP4R1-222	ENST00000582594	MON2	Q7Z3U7	1717 aa		11.44	□□□□□ -0.58
PPP4R1-222	ENST00000582594	LUZP1	Q86V48	1076 aa		11.44	□□□□□ -0.58
PPP4R1-222	ENST00000582594	RHPN1	Q8TCX5	695 aa		11.44	□□□□□ -0.58
PPP4R1-222	ENST00000582594	JAKMIP1	Q96N16	626 aa	Known RBP	11.44	□□□□□ -0.58
PPP4R1-222	ENST00000582594	DIAPH3	Q9NSV4	1193 aa		11.44	□□□□□ -0.58
PPP4R1-222	ENST00000582594	DRC7	Q8IY82	874 aa		11.43	□□□□□ -0.58
PPP4R1-222	ENST00000582594	CKAP2L	Q8IYA6	745 aa		11.43	□□□□□ -0.58
PPP4R1-222	ENST00000582594	IL17RA	Q96F46	866 aa		11.43	□□□□□ -0.58
PPP4R1-222	ENST00000582594	PHAX	Q9H814	394 aa	Known RBP	11.43	□□□□□ -0.58
PPP4R1-222	ENST00000582594	ATP6V1D	Q9Y5K8	247 aa		11.43	□□□□□ -0.58
PPP4R1-222	ENST00000582594	SOS1	Q07889	1333 aa	Predicted RBP	11.43	□□□□□ -0.58
PPP4R1-222	ENST00000582594	NRK	Q7Z2Y5	1582 aa		11.43	□□□□□ -0.58
PPP4R1-222	ENST00000582594	C3	P01024	1663 aa		11.43	□□□□□ -0.58
PPP4R1-222	ENST00000582594	PTH1R	Q03431	593 aa		11.43	□□□□□ -0.58
PPP4R1-222	ENST00000582594	LRMP	Q12912	555 aa		11.43	□□□□□ -0.58
PPP4R1-222	ENST00000582594	PRPF40B	Q6NWY9	871 aa	Known RBP	11.43	□□□□□ -0.58
PPP4R1-222	ENST00000582594	PDRG1	Q9NUG6	133 aa		11.43	□□□□□ -0.58
PPP4R1-222	ENST00000582594	PODXL2	Q9NZ53	605 aa		11.43	□□□□□ -0.58
PPP4R1-222	ENST00000582594	ACE	P12821	1306 aa		11.43	□□□□□ -0.58
PPP4R1-222	ENST00000582594	PEAK1	Q9H792	1746 aa		11.43	□□□□□ -0.58
PPP4R1-222	ENST00000582594	SRGAP3	O43295	1099 aa		11.43	□□□□□ -0.58
PPP4R1-222	ENST00000582594	CCDC192	P0DO97	292 aa		11.43	□□□□□ -0.58
PPP4R1-222	ENST00000582594	CNTROB	Q8N137	903 aa		11.43	□□□□□ -0.58
PPP4R1-222	ENST00000582594	HYPK	Q9NX55	129 aa		11.43	□□□□□ -0.58
PPP4R1-222	ENST00000582594	NRBP1	Q9UHY1	535 aa		11.43	□□□□□ -0.58
PPP4R1-222	ENST00000582594	LIG1	P18858	919 aa		11.42	□□□□□ -0.58
PPP4R1-222	ENST00000582594	C16orf45	Q96MC5	204 aa	Predicted RBP	11.42	□□□□□ -0.58
PPP4R1-222	ENST00000582594	ITSN1	Q15811	1721 aa		11.42	□□□□□ -0.58
PPP4R1-222	ENST00000582594	GOLGA6L6	A8MZA4	724 aa		11.42	□□□□□ -0.58
PPP4R1-222	ENST00000582594	NAA30	Q147X3	362 aa	Predicted RBP	11.42	□□□□□ -0.58
PPP4R1-222	ENST00000582594	CCDC186	Q7Z3E2	898 aa		11.42	□□□□□ -0.58
PPP4R1-222	ENST00000582594	A2ML1	A8K2U0	1454 aa		11.41	□□□□□ -0.58
PPP4R1-222	ENST00000582594	FAM69C	Q0P6D2	419 aa		11.41	□□□□□ -0.58
PPP4R1-222	ENST00000582594	ST3GAL1	Q11201	340 aa		11.41	□□□□□ -0.58

Retrieved 100 of 20,778 RNA–protein pairs in 111 ms