RNA–Protein interactions for RNA: ENST00000582453.5

MSI2-215, Transcript of musashi RNA binding protein 2, human

TSL 3

Gene MSI2, Length 496 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
MSI2-215	ENST00000582453	NOVA2	Q9UNW9	492 aa	Known RBP	6.09	□□□□□ -1.43
MSI2-215	ENST00000582453	ERBB4	Q15303	1308 aa		6.08	□□□□□ -1.44
MSI2-215	ENST00000582453	SUPT5H	O00267	1087 aa	Known RBP	6.08	□□□□□ -1.44
MSI2-215	ENST00000582453	PSMA6	P60900	246 aa	Known RBP	6.08	□□□□□ -1.44
MSI2-215	ENST00000582453	NBPF1	Q3BBV0	1214 aa		6.08	□□□□□ -1.44
MSI2-215	ENST00000582453	RIPOR1	Q6ZS17	1223 aa		6.08	□□□□□ -1.44
MSI2-215	ENST00000582453	SV2A	Q7L0J3	742 aa		6.08	□□□□□ -1.44
MSI2-215	ENST00000582453	TRIM22	Q8IYM9	498 aa		6.08	□□□□□ -1.44
MSI2-215	ENST00000582453	TSPAN10	Q9H1Z9	355 aa	Predicted RBP	6.08	□□□□□ -1.44
MSI2-215	ENST00000582453	ZDHHC3	Q9NYG2	299 aa		6.08	□□□□□ -1.44
MSI2-215	ENST00000582453	CDC14C	A4D256	554 aa		6.07	□□□□□ -1.44
MSI2-215	ENST00000582453	MSX1	P28360	303 aa		6.07	□□□□□ -1.44
MSI2-215	ENST00000582453	NOS2	P35228	1153 aa		6.07	□□□□□ -1.44
MSI2-215	ENST00000582453	LBR	Q14739	615 aa	Known RBP	6.07	□□□□□ -1.44
MSI2-215	ENST00000582453	SWI5	Q1ZZU3	235 aa		6.07	□□□□□ -1.44
MSI2-215	ENST00000582453	LCE2C	Q5TA81	110 aa		6.07	□□□□□ -1.44
MSI2-215	ENST00000582453	VWA5B2	Q8N398	1253 aa		6.07	□□□□□ -1.44
MSI2-215	ENST00000582453	ZDHHC1	Q8WTX9	485 aa		6.07	□□□□□ -1.44
MSI2-215	ENST00000582453	L3MBTL2	Q969R5	705 aa		6.07	□□□□□ -1.44
MSI2-215	ENST00000582453	ZNF837	Q96EG3	531 aa	Predicted RBP	6.07	□□□□□ -1.44
MSI2-215	ENST00000582453	HINFP	Q9BQA5	517 aa		6.07	□□□□□ -1.44
MSI2-215	ENST00000582453	CRISPLD1	Q9H336	500 aa		6.07	□□□□□ -1.44
MSI2-215	ENST00000582453	CUEDC1	Q9NWM3	386 aa	Predicted RBP	6.07	□□□□□ -1.44
MSI2-215	ENST00000582453	ZMIZ1	Q9ULJ6	1067 aa		6.07	□□□□□ -1.44
MSI2-215	ENST00000582453	CHMP3	Q9Y3E7	222 aa		6.07	□□□□□ -1.44
MSI2-215	ENST00000582453	ACIN1	Q9UKV3	1341 aa	Known RBP	6.06	□□□□□ -1.44
MSI2-215	ENST00000582453	SERTM1	A2A2V5	107 aa		6.06	□□□□□ -1.44
MSI2-215	ENST00000582453	PPP1R12B	O60237	982 aa	Predicted RBP	6.06	□□□□□ -1.44
MSI2-215	ENST00000582453	CSB-PGBD3	P0DP91	1061 aa		6.06	□□□□□ -1.44
MSI2-215	ENST00000582453	TAT	P17735	454 aa	Predicted RBP	6.06	□□□□□ -1.44
MSI2-215	ENST00000582453	ATP4A	P20648	1035 aa		6.06	□□□□□ -1.44
MSI2-215	ENST00000582453	HIRA	P54198	1017 aa	Predicted RBP	6.06	□□□□□ -1.44
MSI2-215	ENST00000582453	DBN1	Q16643	649 aa		6.06	□□□□□ -1.44
MSI2-215	ENST00000582453	TBCEL	Q5QJ74	424 aa		6.06	□□□□□ -1.44
MSI2-215	ENST00000582453	POTEA	Q6S8J7	498 aa		6.06	□□□□□ -1.44
MSI2-215	ENST00000582453	PGBD3	Q8N328	593 aa		6.06	□□□□□ -1.44
MSI2-215	ENST00000582453	STAG2	Q8N3U4	1231 aa		6.06	□□□□□ -1.44
MSI2-215	ENST00000582453	AIDA	Q96BJ3	306 aa		6.06	□□□□□ -1.44
MSI2-215	ENST00000582453	NUCKS1	Q9H1E3	243 aa	Known RBP	6.06	□□□□□ -1.44
MSI2-215	ENST00000582453	GPAM	Q9HCL2	828 aa		6.06	□□□□□ -1.44
MSI2-215	ENST00000582453	ATAD2	Q6PL18	1390 aa		6.06	□□□□□ -1.44
MSI2-215	ENST00000582453	EML1	O00423	815 aa		6.05	□□□□□ -1.44
MSI2-215	ENST00000582453	WIPF1	O43516	503 aa		6.05	□□□□□ -1.44
MSI2-215	ENST00000582453	C21orf2	O43822	256 aa		6.05	□□□□□ -1.44
MSI2-215	ENST00000582453	IGFBP4	P22692	258 aa		6.05	□□□□□ -1.44
MSI2-215	ENST00000582453	EFHC2	Q5JST6	749 aa		6.05	□□□□□ -1.44
MSI2-215	ENST00000582453	FOXR1	Q6PIV2	292 aa		6.05	□□□□□ -1.44
MSI2-215	ENST00000582453	SCG3	Q8WXD2	468 aa	Known RBP	6.05	□□□□□ -1.44
MSI2-215	ENST00000582453	ZNF232	Q9UNY5	417 aa		6.05	□□□□□ -1.44
MSI2-215	ENST00000582453	WEE1	P30291	646 aa		6.04	□□□□□ -1.44
MSI2-215	ENST00000582453	GMPR	P36959	345 aa		6.04	□□□□□ -1.44
MSI2-215	ENST00000582453	FAM69C	Q0P6D2	419 aa		6.04	□□□□□ -1.44
MSI2-215	ENST00000582453	GPR161	Q8N6U8	529 aa	Known RBP	6.04	□□□□□ -1.44
MSI2-215	ENST00000582453	STK32A	Q8WU08	396 aa		6.04	□□□□□ -1.44
MSI2-215	ENST00000582453	RUBCNL	Q9H714	662 aa		6.04	□□□□□ -1.44
MSI2-215	ENST00000582453	GPC6	Q9Y625	555 aa	Predicted RBP	6.04	□□□□□ -1.44
MSI2-215	ENST00000582453	PARP3	Q9Y6F1	533 aa		6.04	□□□□□ -1.44
MSI2-215	ENST00000582453	TXLNA	P40222	546 aa		6.03	□□□□□ -1.44
MSI2-215	ENST00000582453	ARSJ	Q5FYB0	599 aa	Predicted RBP	6.03	□□□□□ -1.44
MSI2-215	ENST00000582453	TMEM164	Q5U3C3	297 aa		6.03	□□□□□ -1.44
MSI2-215	ENST00000582453	C1orf53	Q5VUE5	145 aa		6.03	□□□□□ -1.44
MSI2-215	ENST00000582453	NLRP8	Q86W28	1048 aa		6.03	□□□□□ -1.44
MSI2-215	ENST00000582453	TRERF1	Q96PN7	1200 aa		6.03	□□□□□ -1.44
MSI2-215	ENST00000582453	C2orf49	Q9BVC5	232 aa	Predicted RBP	6.03	□□□□□ -1.44
MSI2-215	ENST00000582453		A0A1W2PNR3	127 aa		6.02	□□□□□ -1.45
MSI2-215	ENST00000582453	FOXO3	O43524	673 aa		6.02	□□□□□ -1.45
MSI2-215	ENST00000582453	THBS1	P07996	1170 aa		6.02	□□□□□ -1.45
MSI2-215	ENST00000582453	UBAP2L	Q14157	1087 aa	Known RBP	6.02	□□□□□ -1.45
MSI2-215	ENST00000582453	SH3PXD2A	Q5TCZ1	1133 aa		6.02	□□□□□ -1.45
MSI2-215	ENST00000582453	FIGNL1	Q6PIW4	674 aa		6.02	□□□□□ -1.45
MSI2-215	ENST00000582453	BICDL1	Q6ZP65	573 aa		6.02	□□□□□ -1.45
MSI2-215	ENST00000582453	CHMP7	Q8WUX9	453 aa	Predicted RBP	6.02	□□□□□ -1.45
MSI2-215	ENST00000582453	GTPBP3	Q969Y2	492 aa	Known RBP	6.02	□□□□□ -1.45
MSI2-215	ENST00000582453	ZIC5	Q96T25	663 aa		6.02	□□□□□ -1.45
MSI2-215	ENST00000582453	PHF24	Q9UPV7	400 aa		6.02	□□□□□ -1.45
MSI2-215	ENST00000582453	LGR5	O75473	907 aa		6.01	□□□□□ -1.45
MSI2-215	ENST00000582453	ARID3A	Q99856	593 aa		6.01	□□□□□ -1.45
MSI2-215	ENST00000582453	CFHR5	Q9BXR6	569 aa		6.01	□□□□□ -1.45
MSI2-215	ENST00000582453	COL25A1	Q9BXS0	654 aa	Predicted RBP	6.01	□□□□□ -1.45
MSI2-215	ENST00000582453	CCDC180	Q9P1Z9	1646 aa		6	□□□□□ -1.45
MSI2-215	ENST00000582453	GPR25	O00155	361 aa		6	□□□□□ -1.45
MSI2-215	ENST00000582453	KRT76	Q01546	638 aa		6	□□□□□ -1.45
MSI2-215	ENST00000582453	GAS6	Q14393	721 aa		6	□□□□□ -1.45
MSI2-215	ENST00000582453	OCLN	Q16625	522 aa		6	□□□□□ -1.45
MSI2-215	ENST00000582453	SAMD5	Q5TGI4	173 aa		6	□□□□□ -1.45
MSI2-215	ENST00000582453	RHPN1	Q8TCX5	695 aa		6	□□□□□ -1.45
MSI2-215	ENST00000582453	C7orf43	Q8WVR3	580 aa		6	□□□□□ -1.45
MSI2-215	ENST00000582453	CLP1	Q92989	425 aa	Known RBP	6	□□□□□ -1.45
MSI2-215	ENST00000582453	PHACTR1	Q9C0D0	580 aa		6	□□□□□ -1.45
MSI2-215	ENST00000582453	HCN4	Q9Y3Q4	1203 aa		6	□□□□□ -1.45
MSI2-215	ENST00000582453	GJA3	Q9Y6H8	435 aa		6	□□□□□ -1.45
MSI2-215	ENST00000582453	PRMT3	O60678	531 aa		5.99	□□□□□ -1.45
MSI2-215	ENST00000582453	INSM1	Q01101	510 aa	Predicted RBP	5.99	□□□□□ -1.45
MSI2-215	ENST00000582453	HIF1A	Q16665	826 aa		5.99	□□□□□ -1.45
MSI2-215	ENST00000582453	RTN1	Q16799	776 aa		5.99	□□□□□ -1.45
MSI2-215	ENST00000582453	RNFT1	Q5M7Z0	435 aa		5.99	□□□□□ -1.45
MSI2-215	ENST00000582453	ALDH16A1	Q8IZ83	802 aa		5.99	□□□□□ -1.45
MSI2-215	ENST00000582453	VTI1A	Q96AJ9	217 aa		5.99	□□□□□ -1.45
MSI2-215	ENST00000582453	PRIMPOL	Q96LW4	560 aa		5.99	□□□□□ -1.45
MSI2-215	ENST00000582453	CNTNAP3B	Q96NU0	1288 aa		5.99	□□□□□ -1.45

Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms