RNA–Protein interactions for RNA: ENST00000562956.1

LINC00838-201, long intergenic non-protein coding RNA 838, humanhuman

TSL 1 (best) BASIC

Gene LINC00838, Length 2,936 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00838-201ENST00000562956 CACNA1FO60840 1977 aa11.74□□□□□ -0.53
LINC00838-201ENST00000562956 DDX21Q9NR30 783 aaKnown RBP eCLIP11.73□□□□□ -0.53
LINC00838-201ENST00000562956 HYPKQ9NX55 129 aa11.73□□□□□ -0.53
LINC00838-201ENST00000562956 NKX1-1Q15270 411 aaPredicted RBP11.73□□□□□ -0.53
LINC00838-201ENST00000562956 MAP3K2Q9Y2U5 619 aa11.73□□□□□ -0.53
LINC00838-201ENST00000562956 PNMA6EA0A0J9YXQ4 647 aa11.73□□□□□ -0.53
LINC00838-201ENST00000562956 APBB1O00213 710 aa11.73□□□□□ -0.53
LINC00838-201ENST00000562956 HMMRO75330 724 aa11.73□□□□□ -0.53
LINC00838-201ENST00000562956 SNRPA1P09661 255 aaKnown RBP11.73□□□□□ -0.53
LINC00838-201ENST00000562956 UBTFL1P0CB47 393 aaPredicted RBP11.73□□□□□ -0.53
LINC00838-201ENST00000562956 FMNL2Q96PY5 1086 aa11.73□□□□□ -0.53
LINC00838-201ENST00000562956 USP16Q9Y5T5 823 aa11.73□□□□□ -0.53
LINC00838-201ENST00000562956 KSR2Q6VAB6 950 aa11.72□□□□□ -0.53
LINC00838-201ENST00000562956 C16orf71Q8IYS4 520 aaPredicted RBP11.72□□□□□ -0.53
LINC00838-201ENST00000562956 ERVV-2B6SEH9 535 aa11.72□□□□□ -0.53
LINC00838-201ENST00000562956 NBPF7P0C2Y1 421 aaPredicted RBP11.72□□□□□ -0.53
LINC00838-201ENST00000562956 MYL6BP14649 208 aa11.72□□□□□ -0.53
LINC00838-201ENST00000562956 AIMP1Q12904 312 aaKnown RBP11.72□□□□□ -0.53
LINC00838-201ENST00000562956 C5P01031 1676 aa11.72□□□□□ -0.53
LINC00838-201ENST00000562956 SMARCA5O60264 1052 aaPredicted RBP11.71□□□□□ -0.53
LINC00838-201ENST00000562956 ATP8B2P98198 1209 aa11.71□□□□□ -0.53
LINC00838-201ENST00000562956 COL22A1Q8NFW1 1626 aaPredicted RBP11.71□□□□□ -0.53
LINC00838-201ENST00000562956 N4BP2Q86UW6 1770 aaPredicted RBP11.71□□□□□ -0.53
LINC00838-201ENST00000562956 BMP2KLQ5H9B9 411 aa11.71□□□□□ -0.54
LINC00838-201ENST00000562956 PLEKHM2Q8IWE5 1019 aa11.71□□□□□ -0.54
LINC00838-201ENST00000562956 ZBTB47Q9UFB7 747 aaPredicted RBP11.71□□□□□ -0.54
LINC00838-201ENST00000562956 PIP4K2AP48426 406 aaPredicted RBP11.7□□□□□ -0.54
LINC00838-201ENST00000562956 PIP4K2BP78356 416 aa11.7□□□□□ -0.54
LINC00838-201ENST00000562956 OTUD7AQ8TE49 926 aaPredicted RBP11.7□□□□□ -0.54
LINC00838-201ENST00000562956 COL16A1Q07092 1604 aaPredicted RBP11.7□□□□□ -0.54
LINC00838-201ENST00000562956 LRP10Q7Z4F1 713 aa11.7□□□□□ -0.54
LINC00838-201ENST00000562956 EXOC6BQ9Y2D4 811 aa11.7□□□□□ -0.54
LINC00838-201ENST00000562956 COL14A1Q05707 1796 aaKnown RBP11.7□□□□□ -0.54
LINC00838-201ENST00000562956 SHANK3Q9BYB0 1731 aa11.7□□□□□ -0.54
LINC00838-201ENST00000562956 ADAMTS2O95450 1211 aa11.69□□□□□ -0.54
LINC00838-201ENST00000562956 CWF19L2Q2TBE0 894 aaKnown RBP11.69□□□□□ -0.54
LINC00838-201ENST00000562956 XAGE3Q8WTP9 111 aa11.69□□□□□ -0.54
LINC00838-201ENST00000562956 GLI3P10071 1580 aa11.69□□□□□ -0.54
LINC00838-201ENST00000562956 DDX58O95786 925 aaKnown RBP11.69□□□□□ -0.54
LINC00838-201ENST00000562956 COPS6Q7L5N1 327 aa11.69□□□□□ -0.54
LINC00838-201ENST00000562956 GSPT1P15170 499 aaKnown RBP11.68□□□□□ -0.54
LINC00838-201ENST00000562956 DDRGK1Q96HY6 314 aa11.68□□□□□ -0.54
LINC00838-201ENST00000562956 DISP2A7MBM2 1401 aa11.68□□□□□ -0.54
LINC00838-201ENST00000562956 TOM1O60784 492 aa11.68□□□□□ -0.54
LINC00838-201ENST00000562956 ALDH1L1O75891 902 aa11.68□□□□□ -0.54
LINC00838-201ENST00000562956 PPP1R42Q7Z4L9 355 aa11.68□□□□□ -0.54
LINC00838-201ENST00000562956 RIC3Q7Z5B4 369 aa11.67□□□□□ -0.54
LINC00838-201ENST00000562956 PHLPP1O60346 1717 aa11.67□□□□□ -0.54
LINC00838-201ENST00000562956 PTCD1O75127 700 aaKnown RBP11.67□□□□□ -0.54
LINC00838-201ENST00000562956 LINS1Q8NG48 757 aa11.67□□□□□ -0.54
LINC00838-201ENST00000562956 SSH3Q8TE77 659 aa11.67□□□□□ -0.54
LINC00838-201ENST00000562956 TBC1D32Q96NH3 1257 aa11.67□□□□□ -0.54
LINC00838-201ENST00000562956 UPF2Q9HAU5 1272 aaKnown RBP11.67□□□□□ -0.54
LINC00838-201ENST00000562956 KCPQ6ZWJ8 1503 aa11.67□□□□□ -0.54
LINC00838-201ENST00000562956 IBTKQ9P2D0 1353 aaPredicted RBP11.67□□□□□ -0.54
LINC00838-201ENST00000562956 IGKV5-2P06315 115 aa11.66□□□□□ -0.54
LINC00838-201ENST00000562956 MFAP1P55081 439 aaKnown RBP11.66□□□□□ -0.54
LINC00838-201ENST00000562956 POLA2Q14181 598 aa11.66□□□□□ -0.54
LINC00838-201ENST00000562956 C9orf78Q9NZ63 289 aaPredicted RBP11.66□□□□□ -0.54
LINC00838-201ENST00000562956 NUTM2BA6NNL0 878 aaPredicted RBP11.66□□□□□ -0.54
LINC00838-201ENST00000562956 NUTM2EB1AL46 878 aaPredicted RBP11.66□□□□□ -0.54
LINC00838-201ENST00000562956 EIF5BO60841 1220 aaKnown RBP11.66□□□□□ -0.54
LINC00838-201ENST00000562956 NUTM2AQ8IVF1 878 aaPredicted RBP11.66□□□□□ -0.54
LINC00838-201ENST00000562956 TMOD3Q9NYL9 352 aa11.66□□□□□ -0.54
LINC00838-201ENST00000562956 SRGAP3O43295 1099 aa11.66□□□□□ -0.54
LINC00838-201ENST00000562956 TTC22Q5TAA0 569 aa11.66□□□□□ -0.54
LINC00838-201ENST00000562956 LRRCC1Q9C099 1032 aa11.66□□□□□ -0.54
LINC00838-201ENST00000562956 TNS2Q63HR2 1409 aa11.65□□□□□ -0.54
LINC00838-201ENST00000562956 NBPF26B4DH59 902 aa11.65□□□□□ -0.54
LINC00838-201ENST00000562956 SLC4A3P48751 1232 aa11.65□□□□□ -0.54
LINC00838-201ENST00000562956 NBPF14Q5TI25 921 aa11.65□□□□□ -0.54
LINC00838-201ENST00000562956 NBPF10Q6P3W6 841 aaKnown RBP11.65□□□□□ -0.54
LINC00838-201ENST00000562956 ANKRD13DQ6ZTN6 518 aa11.65□□□□□ -0.54
LINC00838-201ENST00000562956 NBPF15Q8N660 670 aa11.65□□□□□ -0.54
LINC00838-201ENST00000562956 PIGBQ92521 554 aa11.65□□□□□ -0.54
LINC00838-201ENST00000562956 TOGARAM1Q9Y4F4 1720 aa11.65□□□□□ -0.54
LINC00838-201ENST00000562956 METTL22Q9BUU2 404 aaPredicted RBP11.65□□□□□ -0.54
LINC00838-201ENST00000562956 GRM8O00222 908 aa11.64□□□□□ -0.55
LINC00838-201ENST00000562956 TBC1D9Q6ZT07 1266 aa11.64□□□□□ -0.55
LINC00838-201ENST00000562956 MYD88Q99836 296 aa11.64□□□□□ -0.55
LINC00838-201ENST00000562956 ASAP1Q9ULH1 1129 aa11.64□□□□□ -0.55
LINC00838-201ENST00000562956 UTYO14607 1347 aa11.64□□□□□ -0.55
LINC00838-201ENST00000562956 PAPPAQ13219 1627 aa11.64□□□□□ -0.55
LINC00838-201ENST00000562956 NEURL1BA8MQ27 555 aa11.64□□□□□ -0.55
LINC00838-201ENST00000562956 UBR2Q8IWV8 1755 aa11.64□□□□□ -0.55
LINC00838-201ENST00000562956 UBAP1LF5GYI3 381 aa11.63□□□□□ -0.55
LINC00838-201ENST00000562956 EXOC5O00471 708 aa11.63□□□□□ -0.55
LINC00838-201ENST00000562956 SURF6O75683 361 aaKnown RBP11.63□□□□□ -0.55
LINC00838-201ENST00000562956 A1BGP04217 495 aa11.63□□□□□ -0.55
LINC00838-201ENST00000562956 NEXNQ0ZGT2 675 aa11.63□□□□□ -0.55
LINC00838-201ENST00000562956 PDE1AP54750 535 aa11.63□□□□□ -0.55
LINC00838-201ENST00000562956 MTX1Q13505 466 aa11.63□□□□□ -0.55
LINC00838-201ENST00000562956 KAZALD1Q96I82 304 aa11.63□□□□□ -0.55
LINC00838-201ENST00000562956 SUCLG2Q96I99 432 aa11.63□□□□□ -0.55
LINC00838-201ENST00000562956 C22orf23Q9BZE7 217 aa11.63□□□□□ -0.55
LINC00838-201ENST00000562956 ERBB4Q15303 1308 aa11.63□□□□□ -0.55
LINC00838-201ENST00000562956 SPATA31A1Q5TZJ5 1347 aa11.63□□□□□ -0.55
LINC00838-201ENST00000562956 SALL3Q9BXA9 1300 aa11.63□□□□□ -0.55
LINC00838-201ENST00000562956 GCKRQ14397 625 aa11.63□□□□□ -0.55
LINC00838-201ENST00000562956 TSHZ3Q63HK5 1081 aa11.63□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms