RNA–Protein interactions for RNA: ENST00000561326.5

USP3-219, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 4

Gene USP3, Length 543 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-219ENST00000561326 DDX21Q9NR30 783 aaKnown RBP eCLIP13.06□□□□□ -0.32
USP3-219ENST00000561326 LAMB4A4D0S4 1761 aa13.06□□□□□ -0.32
USP3-219ENST00000561326 GLI3P10071 1580 aa13.06□□□□□ -0.32
USP3-219ENST00000561326 C5P01031 1676 aa13.05□□□□□ -0.32
USP3-219ENST00000561326 TMEM57Q8N5G2 664 aa13.05□□□□□ -0.32
USP3-219ENST00000561326 SMARCC1Q92922 1105 aaPredicted RBP13.05□□□□□ -0.32
USP3-219ENST00000561326 ATG3Q9NT62 314 aa13.05□□□□□ -0.32
USP3-219ENST00000561326 CHPF2Q9P2E5 772 aa13.05□□□□□ -0.32
USP3-219ENST00000561326 ASAP1Q9ULH1 1129 aa13.05□□□□□ -0.32
USP3-219ENST00000561326 ABCC4O15439 1325 aa13.05□□□□□ -0.32
USP3-219ENST00000561326 DDX58O95786 925 aaKnown RBP13.04□□□□□ -0.32
USP3-219ENST00000561326 CCT4P50991 539 aaKnown RBP13.04□□□□□ -0.32
USP3-219ENST00000561326 INTS3Q68E01 1043 aaKnown RBP13.04□□□□□ -0.32
USP3-219ENST00000561326 B4GALNT3Q6L9W6 998 aa13.04□□□□□ -0.32
USP3-219ENST00000561326 G2E3Q7L622 706 aa13.04□□□□□ -0.32
USP3-219ENST00000561326 SEPT12Q8IYM1 358 aa13.04□□□□□ -0.32
USP3-219ENST00000561326 PELP1Q8IZL8 1130 aaKnown RBP13.04□□□□□ -0.32
USP3-219ENST00000561326 RBM42Q9BTD8 480 aaKnown RBP13.04□□□□□ -0.32
USP3-219ENST00000561326 TNNQ9UQP3 1299 aa13.04□□□□□ -0.32
USP3-219ENST00000561326 ERBB4Q15303 1308 aa13.04□□□□□ -0.32
USP3-219ENST00000561326 STARD3NLO95772 234 aa13.03□□□□□ -0.32
USP3-219ENST00000561326 RBM6P78332 1123 aaKnown RBP13.03□□□□□ -0.32
USP3-219ENST00000561326 ACSBG1Q96GR2 724 aa13.03□□□□□ -0.32
USP3-219ENST00000561326 USP16Q9Y5T5 823 aa13.03□□□□□ -0.32
USP3-219ENST00000561326 SBF2Q86WG5 1849 aa13.02□□□□□ -0.32
USP3-219ENST00000561326 PRAMEF22A3QJZ6 481 aa13.02□□□□□ -0.33
USP3-219ENST00000561326 SLC4A10Q6U841 1118 aa13.02□□□□□ -0.33
USP3-219ENST00000561326 KCPQ6ZWJ8 1503 aa13.02□□□□□ -0.33
USP3-219ENST00000561326 PHAXQ9H814 394 aaKnown RBP13.01□□□□□ -0.33
USP3-219ENST00000561326 BRWD3Q6RI45 1802 aa13.01□□□□□ -0.33
USP3-219ENST00000561326 ZBTB7BO15156 539 aaPredicted RBP13□□□□□ -0.33
USP3-219ENST00000561326 MYL6BP14649 208 aa13□□□□□ -0.33
USP3-219ENST00000561326 KSR2Q6VAB6 950 aa13□□□□□ -0.33
USP3-219ENST00000561326 PI4KAP2A4QPH2 592 aa12.99□□□□□ -0.33
USP3-219ENST00000561326 ANXA1P04083 346 aa12.99□□□□□ -0.33
USP3-219ENST00000561326 RXRBP28702 533 aa12.99□□□□□ -0.33
USP3-219ENST00000561326 PDIA6Q15084 440 aa12.99□□□□□ -0.33
USP3-219ENST00000561326 FAM196AQ6ZSG2 479 aa12.99□□□□□ -0.33
USP3-219ENST00000561326 KRT27Q7Z3Y8 459 aa12.99□□□□□ -0.33
USP3-219ENST00000561326 NPM2Q86SE8 214 aaKnown RBP12.99□□□□□ -0.33
USP3-219ENST00000561326 PI4KAP1Q8N8J0 262 aa12.99□□□□□ -0.33
USP3-219ENST00000561326 DNAAF4Q8WXU2 420 aa12.99□□□□□ -0.33
USP3-219ENST00000561326 RWDD1Q9H446 243 aaPredicted RBP12.99□□□□□ -0.33
USP3-219ENST00000561326 ZBTB40Q9NUA8 1239 aa12.99□□□□□ -0.33
USP3-219ENST00000561326 N4BP2Q86UW6 1770 aaPredicted RBP12.99□□□□□ -0.33
USP3-219ENST00000561326 F6X3S4 739 aa12.98□□□□□ -0.33
USP3-219ENST00000561326 KCNQ2O43526 872 aa12.98□□□□□ -0.33
USP3-219ENST00000561326 AIMP1Q12904 312 aaKnown RBP12.98□□□□□ -0.33
USP3-219ENST00000561326 PROSER3Q2NL68 480 aa12.98□□□□□ -0.33
USP3-219ENST00000561326 ANKRD13DQ6ZTN6 518 aa12.98□□□□□ -0.33
USP3-219ENST00000561326 COPS6Q7L5N1 327 aa12.98□□□□□ -0.33
USP3-219ENST00000561326 RIC3Q7Z5B4 369 aa12.98□□□□□ -0.33
USP3-219ENST00000561326 SRCIN1Q9C0H9 1055 aa12.98□□□□□ -0.33
USP3-219ENST00000561326 HDAC5Q9UQL6 1122 aa12.98□□□□□ -0.33
USP3-219ENST00000561326 PXDNLA1KZ92 1463 aa12.97□□□□□ -0.33
USP3-219ENST00000561326 RGS12O14924 1447 aa12.97□□□□□ -0.33
USP3-219ENST00000561326 BTAF1O14981 1849 aa12.97□□□□□ -0.33
USP3-219ENST00000561326 NHSQ6T4R5 1651 aa12.97□□□□□ -0.33
USP3-219ENST00000561326 GNAI3P08754 354 aa12.97□□□□□ -0.33
USP3-219ENST00000561326 ATP6V1AP38606 617 aa12.97□□□□□ -0.33
USP3-219ENST00000561326 NEXNQ0ZGT2 675 aa12.97□□□□□ -0.33
USP3-219ENST00000561326 CENPQQ7L2Z9 268 aaPredicted RBP12.97□□□□□ -0.33
USP3-219ENST00000561326 DNAJC10Q8IXB1 793 aa12.97□□□□□ -0.33
USP3-219ENST00000561326 XAGE3Q8WTP9 111 aa12.97□□□□□ -0.33
USP3-219ENST00000561326 ZNF831Q5JPB2 1677 aa12.96□□□□□ -0.33
USP3-219ENST00000561326 LOC102724428A0A0B4J2F2 783 aa12.96□□□□□ -0.33
USP3-219ENST00000561326 A1BGP04217 495 aa12.96□□□□□ -0.33
USP3-219ENST00000561326 HMGB2P26583 209 aaKnown RBP12.96□□□□□ -0.33
USP3-219ENST00000561326 SIK1P57059 783 aa12.96□□□□□ -0.33
USP3-219ENST00000561326 MAP3K2Q9Y2U5 619 aa12.96□□□□□ -0.33
USP3-219ENST00000561326 PALLDQ8WX93 1383 aa12.95□□□□□ -0.34
USP3-219ENST00000561326 ALDH1L1O75891 902 aa12.95□□□□□ -0.34
USP3-219ENST00000561326 CYP19A1P11511 503 aaPredicted RBP12.95□□□□□ -0.34
USP3-219ENST00000561326 FAM182BQ5T319 152 aa12.95□□□□□ -0.34
USP3-219ENST00000561326 PLBD2Q8NHP8 589 aa12.95□□□□□ -0.34
USP3-219ENST00000561326 BCL11BQ9C0K0 894 aaPredicted RBP12.95□□□□□ -0.34
USP3-219ENST00000561326 NBPF26B4DH59 902 aa12.94□□□□□ -0.34
USP3-219ENST00000561326 NBPF14Q5TI25 921 aa12.94□□□□□ -0.34
USP3-219ENST00000561326 NBPF10Q6P3W6 841 aaKnown RBP12.94□□□□□ -0.34
USP3-219ENST00000561326 NBPF15Q8N660 670 aa12.94□□□□□ -0.34
USP3-219ENST00000561326 LINS1Q8NG48 757 aa12.94□□□□□ -0.34
USP3-219ENST00000561326 PCDHB15Q9Y5E8 787 aa12.94□□□□□ -0.34
USP3-219ENST00000561326 AFDNP55196 1824 aaKnown RBP12.94□□□□□ -0.34
USP3-219ENST00000561326 ADCY9O60503 1353 aa12.94□□□□□ -0.34
USP3-219ENST00000561326 GNAI2P04899 355 aa12.93□□□□□ -0.34
USP3-219ENST00000561326 HDAC1Q13547 482 aaPredicted RBP12.93□□□□□ -0.34
USP3-219ENST00000561326 BEND3Q5T5X7 828 aa12.93□□□□□ -0.34
USP3-219ENST00000561326 KIF6Q6ZMV9 814 aa12.93□□□□□ -0.34
USP3-219ENST00000561326 LRP10Q7Z4F1 713 aa12.93□□□□□ -0.34
USP3-219ENST00000561326 SLC4A9Q96Q91 983 aa12.93□□□□□ -0.34
USP3-219ENST00000561326 METTL22Q9BUU2 404 aaPredicted RBP12.93□□□□□ -0.34
USP3-219ENST00000561326 ARFGEF2Q9Y6D5 1785 aa12.93□□□□□ -0.34
USP3-219ENST00000561326 ATP10DQ9P241 1426 aa12.93□□□□□ -0.34
USP3-219ENST00000561326 TJP1Q07157 1748 aa12.93□□□□□ -0.34
USP3-219ENST00000561326 CICQ96RK0 1608 aaPredicted RBP12.92□□□□□ -0.34
USP3-219ENST00000561326 UBTFL1P0CB47 393 aaPredicted RBP12.92□□□□□ -0.34
USP3-219ENST00000561326 IL6STP40189 918 aaPredicted RBP12.92□□□□□ -0.34
USP3-219ENST00000561326 PIP4K2AP48426 406 aaPredicted RBP12.92□□□□□ -0.34
USP3-219ENST00000561326 RPAP2Q8IXW5 612 aaPredicted RBP12.92□□□□□ -0.34
USP3-219ENST00000561326 ARXQ96QS3 562 aa12.92□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 121.8 ms