RNA–Protein interactions for RNA: ENST00000560202.1

USP3-218, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 1,681 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-218ENST00000560202 USP16Q9Y5T5 823 aa14.27□□□□□ -0.12
USP3-218ENST00000560202 ABCC4O15439 1325 aa14.27□□□□□ -0.13
USP3-218ENST00000560202 DOT1LQ8TEK3 1739 aa14.27□□□□□ -0.13
USP3-218ENST00000560202 TMEM57Q8N5G2 664 aa14.26□□□□□ -0.13
USP3-218ENST00000560202 ITGB4P16144 1822 aa14.26□□□□□ -0.13
USP3-218ENST00000560202 UBR2Q8IWV8 1755 aa14.26□□□□□ -0.13
USP3-218ENST00000560202 RBM6P78332 1123 aaKnown RBP14.26□□□□□ -0.13
USP3-218ENST00000560202 PHAXQ9H814 394 aaKnown RBP14.26□□□□□ -0.13
USP3-218ENST00000560202 DDX21Q9NR30 783 aaKnown RBP eCLIP14.26□□□□□ -0.13
USP3-218ENST00000560202 RGS12O14924 1447 aa14.25□□□□□ -0.13
USP3-218ENST00000560202 KCNQ2O43526 872 aa14.25□□□□□ -0.13
USP3-218ENST00000560202 ANXA1P04083 346 aa14.25□□□□□ -0.13
USP3-218ENST00000560202 FKBP5Q13451 457 aaPredicted RBP14.25□□□□□ -0.13
USP3-218ENST00000560202 PDIA6Q15084 440 aa14.25□□□□□ -0.13
USP3-218ENST00000560202 ITPRIPQ8IWB1 547 aa14.25□□□□□ -0.13
USP3-218ENST00000560202 VSIG10Q8N0Z9 540 aa14.25□□□□□ -0.13
USP3-218ENST00000560202 C5P01031 1676 aa14.25□□□□□ -0.13
USP3-218ENST00000560202 PROSER3Q2NL68 480 aa14.24□□□□□ -0.13
USP3-218ENST00000560202 B4GALNT3Q6L9W6 998 aa14.24□□□□□ -0.13
USP3-218ENST00000560202 RBM42Q9BTD8 480 aaKnown RBP14.24□□□□□ -0.13
USP3-218ENST00000560202 HYPKQ9NX55 129 aa14.24□□□□□ -0.13
USP3-218ENST00000560202 DDX19BQ9UMR2 479 aa14.24□□□□□ -0.13
USP3-218ENST00000560202 AAMPQ13685 434 aa14.23□□□□□ -0.13
USP3-218ENST00000560202 FAM182BQ5T319 152 aa14.23□□□□□ -0.13
USP3-218ENST00000560202 CCDC136Q96JN2 1154 aa14.23□□□□□ -0.13
USP3-218ENST00000560202 TEX13AQ9BXU3 409 aaPredicted RBP14.23□□□□□ -0.13
USP3-218ENST00000560202 INTS3Q68E01 1043 aaKnown RBP14.23□□□□□ -0.13
USP3-218ENST00000560202 ERBB4Q15303 1308 aa14.22□□□□□ -0.13
USP3-218ENST00000560202 F6X3S4 739 aa14.22□□□□□ -0.13
USP3-218ENST00000560202 MYL6BP14649 208 aa14.22□□□□□ -0.13
USP3-218ENST00000560202 SLC4A9Q96Q91 983 aa14.22□□□□□ -0.13
USP3-218ENST00000560202 KRT27Q7Z3Y8 459 aa14.21□□□□□ -0.13
USP3-218ENST00000560202 DNAJC10Q8IXB1 793 aa14.21□□□□□ -0.13
USP3-218ENST00000560202 SMARCC1Q92922 1105 aaPredicted RBP14.21□□□□□ -0.13
USP3-218ENST00000560202 STARD3NLO95772 234 aa14.2□□□□□ -0.14
USP3-218ENST00000560202 RXRBP28702 533 aa14.2□□□□□ -0.14
USP3-218ENST00000560202 SLC4A10Q6U841 1118 aa14.2□□□□□ -0.14
USP3-218ENST00000560202 LRP10Q7Z4F1 713 aa14.2□□□□□ -0.14
USP3-218ENST00000560202 RGS17Q9UGC6 210 aaPredicted RBP14.2□□□□□ -0.14
USP3-218ENST00000560202 LAMB4A4D0S4 1761 aa14.2□□□□□ -0.14
USP3-218ENST00000560202 CACNA1FO60840 1977 aa14.2□□□□□ -0.14
USP3-218ENST00000560202 NBPF26B4DH59 902 aa14.2□□□□□ -0.14
USP3-218ENST00000560202 ZBTB7BO15156 539 aaPredicted RBP14.2□□□□□ -0.14
USP3-218ENST00000560202 A1BGP04217 495 aa14.2□□□□□ -0.14
USP3-218ENST00000560202 PIP4K2AP48426 406 aaPredicted RBP14.2□□□□□ -0.14
USP3-218ENST00000560202 CCT4P50991 539 aaKnown RBP14.2□□□□□ -0.14
USP3-218ENST00000560202 NBPF14Q5TI25 921 aa14.2□□□□□ -0.14
USP3-218ENST00000560202 NBPF10Q6P3W6 841 aaKnown RBP14.2□□□□□ -0.14
USP3-218ENST00000560202 NBPF15Q8N660 670 aa14.2□□□□□ -0.14
USP3-218ENST00000560202 CHMP4BQ9H444 224 aaKnown RBP14.2□□□□□ -0.14
USP3-218ENST00000560202 PALLDQ8WX93 1383 aa14.19□□□□□ -0.14
USP3-218ENST00000560202 PI4KAP2A4QPH2 592 aa14.19□□□□□ -0.14
USP3-218ENST00000560202 AIMP1Q12904 312 aaKnown RBP14.19□□□□□ -0.14
USP3-218ENST00000560202 PTF1AQ7RTS3 328 aa14.19□□□□□ -0.14
USP3-218ENST00000560202 PI4KAP1Q8N8J0 262 aa14.19□□□□□ -0.14
USP3-218ENST00000560202 ZBTB40Q9NUA8 1239 aa14.19□□□□□ -0.14
USP3-218ENST00000560202 LOC102724428A0A0B4J2F2 783 aa14.18□□□□□ -0.14
USP3-218ENST00000560202 DDX58O95786 925 aaKnown RBP14.18□□□□□ -0.14
USP3-218ENST00000560202 CYP19A1P11511 503 aaPredicted RBP14.18□□□□□ -0.14
USP3-218ENST00000560202 SIK1P57059 783 aa14.18□□□□□ -0.14
USP3-218ENST00000560202 KSR2Q6VAB6 950 aa14.18□□□□□ -0.14
USP3-218ENST00000560202 COPS6Q7L5N1 327 aa14.18□□□□□ -0.14
USP3-218ENST00000560202 XAGE3Q8WTP9 111 aa14.18□□□□□ -0.14
USP3-218ENST00000560202 DNAAF4Q8WXU2 420 aa14.18□□□□□ -0.14
USP3-218ENST00000560202 FAM196AQ6ZSG2 479 aa14.17□□□□□ -0.14
USP3-218ENST00000560202 ADCY9O60503 1353 aa14.17□□□□□ -0.14
USP3-218ENST00000560202 KAT6BQ8WYB5 2073 aa14.17□□□□□ -0.14
USP3-218ENST00000560202 NHSQ6T4R5 1651 aa14.17□□□□□ -0.14
USP3-218ENST00000560202 PXDNLA1KZ92 1463 aa14.17□□□□□ -0.14
USP3-218ENST00000560202 ATP6V1AP38606 617 aa14.17□□□□□ -0.14
USP3-218ENST00000560202 POTEAQ6S8J7 498 aa14.17□□□□□ -0.14
USP3-218ENST00000560202 MAP3K2Q9Y2U5 619 aa14.17□□□□□ -0.14
USP3-218ENST00000560202 ADRA2BP18089 450 aa14.16□□□□□ -0.14
USP3-218ENST00000560202 BCL11BQ9C0K0 894 aaPredicted RBP14.16□□□□□ -0.14
USP3-218ENST00000560202 PCDHB15Q9Y5E8 787 aa14.16□□□□□ -0.14
USP3-218ENST00000560202 BEND3Q5T5X7 828 aa14.15□□□□□ -0.14
USP3-218ENST00000560202 ANKRD13DQ6ZTN6 518 aa14.15□□□□□ -0.14
USP3-218ENST00000560202 RIC3Q7Z5B4 369 aa14.15□□□□□ -0.14
USP3-218ENST00000560202 PIAS4Q8N2W9 510 aaPredicted RBP14.15□□□□□ -0.14
USP3-218ENST00000560202 ITPK1Q13572 414 aa14.14□□□□□ -0.15
USP3-218ENST00000560202 SRCIN1Q9C0H9 1055 aa14.14□□□□□ -0.15
USP3-218ENST00000560202 BRWD3Q6RI45 1802 aa14.14□□□□□ -0.15
USP3-218ENST00000560202 ATP10DQ9P241 1426 aa14.14□□□□□ -0.15
USP3-218ENST00000560202 TJP1Q07157 1748 aa14.14□□□□□ -0.15
USP3-218ENST00000560202 PLBD2Q8NHP8 589 aa14.14□□□□□ -0.15
USP3-218ENST00000560202 MEIS3Q99687 375 aa14.14□□□□□ -0.15
USP3-218ENST00000560202 TTLL7Q6ZT98 887 aa14.13□□□□□ -0.15
USP3-218ENST00000560202 ZBTB1Q9Y2K1 713 aa14.13□□□□□ -0.15
USP3-218ENST00000560202 KDM2BQ8NHM5 1336 aa14.12□□□□□ -0.15
USP3-218ENST00000560202 IGHDP01880 384 aa14.12□□□□□ -0.15
USP3-218ENST00000560202 INTS5Q6P9B9 1019 aaKnown RBP14.12□□□□□ -0.15
USP3-218ENST00000560202 LINS1Q8NG48 757 aa14.12□□□□□ -0.15
USP3-218ENST00000560202 METTL22Q9BUU2 404 aaPredicted RBP14.12□□□□□ -0.15
USP3-218ENST00000560202 C1orf115Q9H7X2 142 aa14.12□□□□□ -0.15
USP3-218ENST00000560202 CCDC87Q9NVE4 849 aa14.12□□□□□ -0.15
USP3-218ENST00000560202 BTAF1O14981 1849 aa14.12□□□□□ -0.15
USP3-218ENST00000560202 SBF2Q86WG5 1849 aa14.11□□□□□ -0.15
USP3-218ENST00000560202 CICQ96RK0 1608 aaPredicted RBP14.11□□□□□ -0.15
USP3-218ENST00000560202 ALDH1L1O75891 902 aa14.11□□□□□ -0.15
USP3-218ENST00000560202 TRIM37O94972 964 aa14.11□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms