RNA–Protein interactions for RNA: ENST00000559192.5

USP3-210, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 5,499 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-210ENST00000559192 ANO6Q4KMQ2 910 aa8.38□□□□□ -1.07
USP3-210ENST00000559192 KIF1BPQ96EK5 621 aa8.38□□□□□ -1.07
USP3-210ENST00000559192 NOL12Q9UGY1 213 aaKnown RBP eCLIP8.38□□□□□ -1.07
USP3-210ENST00000559192 V9GYY5 206 aaPredicted RBP8.38□□□□□ -1.07
USP3-210ENST00000559192 PTGS1P23219 599 aa8.38□□□□□ -1.07
USP3-210ENST00000559192 SKIDA1Q1XH10 827 aa8.38□□□□□ -1.07
USP3-210ENST00000559192 F13A1P00488 732 aa8.38□□□□□ -1.07
USP3-210ENST00000559192 IDI1Q13907 227 aa8.38□□□□□ -1.07
USP3-210ENST00000559192 CCDC186Q7Z3E2 898 aa8.38□□□□□ -1.07
USP3-210ENST00000559192 SLC52A1Q9NWF4 448 aa8.38□□□□□ -1.07
USP3-210ENST00000559192 POLKQ9UBT6 870 aa8.38□□□□□ -1.07
USP3-210ENST00000559192 USP8P40818 1118 aa8.37□□□□□ -1.07
USP3-210ENST00000559192 GUCY1B3Q02153 619 aa8.37□□□□□ -1.07
USP3-210ENST00000559192 CEP135Q66GS9 1140 aa8.37□□□□□ -1.07
USP3-210ENST00000559192 SMAP1Q8IYB5 467 aaPredicted RBP8.37□□□□□ -1.07
USP3-210ENST00000559192 TTC5Q8N0Z6 440 aa8.37□□□□□ -1.07
USP3-210ENST00000559192 ZMYM3Q14202 1370 aa8.37□□□□□ -1.07
USP3-210ENST00000559192 TSR1Q2NL82 804 aaKnown RBP8.37□□□□□ -1.07
USP3-210ENST00000559192 CEP57L1Q8IYX8 460 aa8.37□□□□□ -1.07
USP3-210ENST00000559192 USHBP1Q8N6Y0 703 aa8.37□□□□□ -1.07
USP3-210ENST00000559192 PTPRTO14522 1441 aa8.37□□□□□ -1.07
USP3-210ENST00000559192 GNAT3A8MTJ3 354 aa8.37□□□□□ -1.07
USP3-210ENST00000559192 CPA1P15085 419 aa8.37□□□□□ -1.07
USP3-210ENST00000559192 DYDC1Q8WWB3 177 aa8.37□□□□□ -1.07
USP3-210ENST00000559192 TCEANC2Q96MN5 208 aa8.37□□□□□ -1.07
USP3-210ENST00000559192 ZNF692Q9BU19 519 aaPredicted RBP8.37□□□□□ -1.07
USP3-210ENST00000559192 BOLA2Q9H3K6 86 aa8.37□□□□□ -1.07
USP3-210ENST00000559192 TPM1P09493 284 aa8.37□□□□□ -1.07
USP3-210ENST00000559192 ABTB2Q8N961 1025 aa8.37□□□□□ -1.07
USP3-210ENST00000559192 CHMP4CQ96CF2 233 aa8.37□□□□□ -1.07
USP3-210ENST00000559192 SH2B1Q9NRF2 756 aaPredicted RBP8.37□□□□□ -1.07
USP3-210ENST00000559192 AK2P54819 239 aa8.36□□□□□ -1.07
USP3-210ENST00000559192 CCDC8Q9H0W5 538 aaPredicted RBP8.36□□□□□ -1.07
USP3-210ENST00000559192 CFAP45Q9UL16 551 aa8.36□□□□□ -1.07
USP3-210ENST00000559192 MYL6BP14649 208 aa8.36□□□□□ -1.07
USP3-210ENST00000559192 FBXO31Q5XUX0 539 aaPredicted RBP8.36□□□□□ -1.07
USP3-210ENST00000559192 PPIP5K1Q6PFW1 1433 aa8.36□□□□□ -1.07
USP3-210ENST00000559192 POLR3GO15318 223 aaPredicted RBP8.36□□□□□ -1.07
USP3-210ENST00000559192 GLRX3O76003 335 aaKnown RBP8.36□□□□□ -1.07
USP3-210ENST00000559192 PPP1R42Q7Z4L9 355 aa8.36□□□□□ -1.07
USP3-210ENST00000559192 ERVK-7P63135 1459 aa8.36□□□□□ -1.07
USP3-210ENST00000559192 SAMD9LQ8IVG5 1584 aa8.36□□□□□ -1.07
USP3-210ENST00000559192 TAF7Q15545 349 aaPredicted RBP8.36□□□□□ -1.07
USP3-210ENST00000559192 RALYLQ86SE5 291 aaKnown RBP8.36□□□□□ -1.07
USP3-210ENST00000559192 SCAND2PQ9GZW5 306 aaPredicted RBP8.36□□□□□ -1.07
USP3-210ENST00000559192 TARBP1Q13395 1621 aaKnown RBP8.36□□□□□ -1.07
USP3-210ENST00000559192 U2AF2P26368 475 aaKnown RBP eCLIP8.36□□□□□ -1.072e-7■■■□□ 16.9
USP3-210ENST00000559192 TRDNQ13061 729 aa8.36□□□□□ -1.07
USP3-210ENST00000559192 LUZP1Q86V48 1076 aa8.36□□□□□ -1.07
USP3-210ENST00000559192 GPATCH11Q8N954 259 aa8.36□□□□□ -1.07
USP3-210ENST00000559192 MYRIPQ8NFW9 859 aa8.36□□□□□ -1.07
USP3-210ENST00000559192 GIMAP7Q8NHV1 300 aa8.36□□□□□ -1.07
USP3-210ENST00000559192 ARHGEF5Q12774 1597 aa8.36□□□□□ -1.07
USP3-210ENST00000559192 CHMLP26374 656 aa8.35□□□□□ -1.07
USP3-210ENST00000559192 ZNF165P49910 485 aa8.35□□□□□ -1.07
USP3-210ENST00000559192 HOOK1Q9UJC3 728 aaKnown RBP8.35□□□□□ -1.07
USP3-210ENST00000559192 ATP2B1P20020 1258 aa8.35□□□□□ -1.07
USP3-210ENST00000559192 BRPF1P55201 1214 aaPredicted RBP8.35□□□□□ -1.07
USP3-210ENST00000559192 KIF18AQ8NI77 898 aa8.35□□□□□ -1.07
USP3-210ENST00000559192 DNAJC25Q9H1X3 360 aa8.35□□□□□ -1.07
USP3-210ENST00000559192 BTBD11A6QL63 1104 aa8.35□□□□□ -1.07
USP3-210ENST00000559192 RIOK3O14730 519 aaKnown RBP8.35□□□□□ -1.07
USP3-210ENST00000559192 CCP110O43303 1012 aa8.35□□□□□ -1.07
USP3-210ENST00000559192 ZNF500O60304 480 aaPredicted RBP8.35□□□□□ -1.07
USP3-210ENST00000559192 PSME1Q06323 249 aa8.35□□□□□ -1.07
USP3-210ENST00000559192 CPLX2Q6PUV4 134 aaKnown RBP8.35□□□□□ -1.07
USP3-210ENST00000559192 ZNF526Q8TF50 670 aaPredicted RBP8.35□□□□□ -1.07
USP3-210ENST00000559192 ANAPC15P60006 121 aa8.34□□□□□ -1.07
USP3-210ENST00000559192 PCMTD1Q96MG8 357 aaPredicted RBP8.34□□□□□ -1.07
USP3-210ENST00000559192 DACT1Q9NYF0 836 aa8.34□□□□□ -1.07
USP3-210ENST00000559192 ZNF518AQ6AHZ1 1483 aa8.34□□□□□ -1.07
USP3-210ENST00000559192 WASLO00401 505 aaPredicted RBP8.34□□□□□ -1.07
USP3-210ENST00000559192 PIBF1Q8WXW3 757 aa8.34□□□□□ -1.07
USP3-210ENST00000559192 DDX19AQ9NUU7 478 aaKnown RBP8.34□□□□□ -1.07
USP3-210ENST00000559192 FBXO3Q9UK99 471 aa8.34□□□□□ -1.07
USP3-210ENST00000559192 CCDC61Q9Y6R9 512 aa8.34□□□□□ -1.07
USP3-210ENST00000559192 AKAP17AQ02040 695 aaKnown RBP8.34□□□□□ -1.07
USP3-210ENST00000559192 CCAR1Q8IX12 1150 aaKnown RBP8.34□□□□□ -1.07
USP3-210ENST00000559192 FAM200AQ8TCP9 573 aa8.34□□□□□ -1.07
USP3-210ENST00000559192 PLA2R1Q13018 1463 aa8.34□□□□□ -1.07
USP3-210ENST00000559192 BIN1O00499 593 aa8.34□□□□□ -1.07
USP3-210ENST00000559192 FOXO3O43524 673 aa8.34□□□□□ -1.07
USP3-210ENST00000559192 CCT2P78371 535 aaKnown RBP8.34□□□□□ -1.07
USP3-210ENST00000559192 TYRO3Q06418 890 aa8.34□□□□□ -1.07
USP3-210ENST00000559192 G2E3Q7L622 706 aa8.34□□□□□ -1.07
USP3-210ENST00000559192 RHPN1Q8TCX5 695 aa8.34□□□□□ -1.07
USP3-210ENST00000559192 CROCC2H7BZ55 1655 aa8.34□□□□□ -1.07
USP3-210ENST00000559192 GTF2F1P35269 517 aaKnown RBP eCLIP8.33□□□□□ -1.08
USP3-210ENST00000559192 ISM2Q6H9L7 571 aa8.33□□□□□ -1.08
USP3-210ENST00000559192 TMC6Q7Z403 805 aa8.33□□□□□ -1.08
USP3-210ENST00000559192 UBXN4Q92575 508 aa8.33□□□□□ -1.08
USP3-210ENST00000559192 PLEKHF1Q96S99 279 aa8.33□□□□□ -1.08
USP3-210ENST00000559192 GTPBP4Q9BZE4 634 aaKnown RBP8.33□□□□□ -1.08
USP3-210ENST00000559192 TMCO3Q6UWJ1 677 aa8.33□□□□□ -1.08
USP3-210ENST00000559192 ERCC4Q92889 916 aaPredicted RBP8.33□□□□□ -1.08
USP3-210ENST00000559192 ZFP91Q96JP5 570 aaPredicted RBP8.33□□□□□ -1.08
USP3-210ENST00000559192 NOL10Q9BSC4 688 aaKnown RBP8.33□□□□□ -1.08
USP3-210ENST00000559192 NSFL1CQ9UNZ2 370 aaKnown RBP8.33□□□□□ -1.08
USP3-210ENST00000559192 KIAA0754O94854 1291 aa8.33□□□□□ -1.08
USP3-210ENST00000559192 ANXA1P04083 346 aa8.33□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 53.2 ms