RNA–Protein interactions for RNA: ENST00000555953.1

SCFD1-217, Transcript of sec1 family domain containing 1, humanhuman

TSL 5

Gene SCFD1, Length 497 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-217ENST00000555953 GDF2Q9UK05 429 aaPredicted RBP9.37□□□□□ -0.91
SCFD1-217ENST00000555953 LZTS3O60299 673 aaPredicted RBP9.36□□□□□ -0.91
SCFD1-217ENST00000555953 SNRPNP63162 240 aaKnown RBP9.36□□□□□ -0.91
SCFD1-217ENST00000555953 PSME1Q06323 249 aa9.36□□□□□ -0.91
SCFD1-217ENST00000555953 FLIIQ13045 1269 aa9.36□□□□□ -0.91
SCFD1-217ENST00000555953 NBPF1Q3BBV0 1214 aa9.36□□□□□ -0.91
SCFD1-217ENST00000555953 FIGNL1Q6PIW4 674 aa9.36□□□□□ -0.91
SCFD1-217ENST00000555953 NLRP8Q86W28 1048 aa9.36□□□□□ -0.91
SCFD1-217ENST00000555953 SERBP1Q8NC51 408 aaKnown RBP eCLIP9.36□□□□□ -0.91
SCFD1-217ENST00000555953 ZNF358Q9NW07 568 aa9.36□□□□□ -0.91
SCFD1-217ENST00000555953 CABP1Q9NZU7 370 aa9.36□□□□□ -0.91
SCFD1-217ENST00000555953 HCN2Q9UL51 889 aa9.36□□□□□ -0.91
SCFD1-217ENST00000555953 PCDHGC4Q9Y5F7 938 aa9.36□□□□□ -0.91
SCFD1-217ENST00000555953 A0A1W2PNR3 127 aa9.35□□□□□ -0.91
SCFD1-217ENST00000555953 ARSJQ5FYB0 599 aaPredicted RBP9.35□□□□□ -0.91
SCFD1-217ENST00000555953 GOLGA6L1Q8N7Z2 621 aa9.35□□□□□ -0.91
SCFD1-217ENST00000555953 EDARADDQ8WWZ3 215 aa9.35□□□□□ -0.91
SCFD1-217ENST00000555953 DCAF5Q96JK2 942 aa9.35□□□□□ -0.91
SCFD1-217ENST00000555953 ZDHHC3Q9NYG2 299 aa9.35□□□□□ -0.91
SCFD1-217ENST00000555953 PARP3Q9Y6F1 533 aa9.35□□□□□ -0.91
SCFD1-217ENST00000555953 BACH1O14867 736 aa9.34□□□□□ -0.91
SCFD1-217ENST00000555953 ATXN7O15265 892 aaPredicted RBP9.34□□□□□ -0.91
SCFD1-217ENST00000555953 SUZ12Q15022 739 aaKnown RBP9.34□□□□□ -0.91
SCFD1-217ENST00000555953 SCHIP1Q9P0W5 487 aaPredicted RBP9.34□□□□□ -0.91
SCFD1-217ENST00000555953 GGA1Q9UJY5 639 aa9.34□□□□□ -0.91
SCFD1-217ENST00000555953 DCDC2BA2VCK2 349 aa9.33□□□□□ -0.92
SCFD1-217ENST00000555953 TATP17735 454 aaPredicted RBP9.33□□□□□ -0.92
SCFD1-217ENST00000555953 FOXK2Q01167 660 aa9.33□□□□□ -0.92
SCFD1-217ENST00000555953 SLCO4C1Q6ZQN7 724 aa9.33□□□□□ -0.92
SCFD1-217ENST00000555953 ZDHHC1Q8WTX9 485 aa9.33□□□□□ -0.92
SCFD1-217ENST00000555953 UCN2Q96RP3 112 aa9.33□□□□□ -0.92
SCFD1-217ENST00000555953 ZIC5Q96T25 663 aa9.33□□□□□ -0.92
SCFD1-217ENST00000555953 IGHA1P01876 353 aa9.32□□□□□ -0.92
SCFD1-217ENST00000555953 MAPTP10636 758 aaKnown RBP9.32□□□□□ -0.92
SCFD1-217ENST00000555953 EPHA4P54764 986 aa9.32□□□□□ -0.92
SCFD1-217ENST00000555953 TNP2Q05952 138 aa9.32□□□□□ -0.92
SCFD1-217ENST00000555953 ITGB2P05107 769 aa9.31□□□□□ -0.92
SCFD1-217ENST00000555953 ARAFP10398 606 aa9.31□□□□□ -0.92
SCFD1-217ENST00000555953 CD33P20138 364 aa9.31□□□□□ -0.92
SCFD1-217ENST00000555953 TXLNAP40222 546 aa9.31□□□□□ -0.92
SCFD1-217ENST00000555953 PLA2G4EQ3MJ16 856 aa9.31□□□□□ -0.92
SCFD1-217ENST00000555953 HDGFL1Q5TGJ6 251 aa9.31□□□□□ -0.92
SCFD1-217ENST00000555953 KIAA1024Q9UPX6 916 aa9.31□□□□□ -0.92
SCFD1-217ENST00000555953 USP17L3A6NCW0 530 aa9.3□□□□□ -0.92
SCFD1-217ENST00000555953 USP17L4A6NCW7 530 aa9.3□□□□□ -0.92
SCFD1-217ENST00000555953 HOXB4P17483 251 aaPredicted RBP9.3□□□□□ -0.92
SCFD1-217ENST00000555953 TBCELQ5QJ74 424 aa9.3□□□□□ -0.92
SCFD1-217ENST00000555953 USP17L2Q6R6M4 530 aa9.3□□□□□ -0.92
SCFD1-217ENST00000555953 USP17L1Q7RTZ2 530 aa9.3□□□□□ -0.92
SCFD1-217ENST00000555953 PLEKHM2Q8IWE5 1019 aa9.3□□□□□ -0.92
SCFD1-217ENST00000555953 TNS4Q8IZW8 715 aa9.3□□□□□ -0.92
SCFD1-217ENST00000555953 RRAGCQ9HB90 399 aa9.3□□□□□ -0.92
SCFD1-217ENST00000555953 NEURL1BA8MQ27 555 aa9.29□□□□□ -0.92
SCFD1-217ENST00000555953 KHNYNO15037 678 aaKnown RBP9.29□□□□□ -0.92
SCFD1-217ENST00000555953 ZBTB7BO15156 539 aaPredicted RBP9.29□□□□□ -0.92
SCFD1-217ENST00000555953 EPXP11678 715 aa9.29□□□□□ -0.92
SCFD1-217ENST00000555953 CLDN10P78369 228 aa9.29□□□□□ -0.92
SCFD1-217ENST00000555953 TEAD4Q15561 434 aa9.29□□□□□ -0.92
SCFD1-217ENST00000555953 TRIM50Q86XT4 487 aa9.29□□□□□ -0.92
SCFD1-217ENST00000555953 SLC9A9Q8IVB4 645 aa9.29□□□□□ -0.92
SCFD1-217ENST00000555953 TPCN2Q8NHX9 752 aa9.29□□□□□ -0.92
SCFD1-217ENST00000555953 L3MBTL2Q969R5 705 aa9.29□□□□□ -0.92
SCFD1-217ENST00000555953 MKL2Q9ULH7 1088 aa9.29□□□□□ -0.92
SCFD1-217ENST00000555953 LOC100996750A0A140TA64 210 aa9.28□□□□□ -0.92
SCFD1-217ENST00000555953 FAM157BP0CG42 384 aa9.28□□□□□ -0.92
SCFD1-217ENST00000555953 AMPD1P23109 780 aa9.28□□□□□ -0.92
SCFD1-217ENST00000555953 FAM182BQ5T319 152 aa9.28□□□□□ -0.92
SCFD1-217ENST00000555953 BICDL1Q6ZP65 573 aa9.28□□□□□ -0.92
SCFD1-217ENST00000555953 KRTAP4-6Q9BYQ5 205 aa9.28□□□□□ -0.92
SCFD1-217ENST00000555953 KLF15Q9UIH9 416 aa9.28□□□□□ -0.92
SCFD1-217ENST00000555953 GJA3Q9Y6H8 435 aa9.28□□□□□ -0.92
SCFD1-217ENST00000555953 ATP9BO43861 1147 aa9.27□□□□□ -0.93
SCFD1-217ENST00000555953 NOS2P35228 1153 aa9.27□□□□□ -0.93
SCFD1-217ENST00000555953 SAMD5Q5TGI4 173 aa9.27□□□□□ -0.93
SCFD1-217ENST00000555953 BTBD6Q96KE9 485 aa9.27□□□□□ -0.93
SCFD1-217ENST00000555953 STRN4Q9NRL3 753 aa9.27□□□□□ -0.93
SCFD1-217ENST00000555953 COL8A1P27658 744 aa9.26□□□□□ -0.93
SCFD1-217ENST00000555953 SH3PXD2AQ5TCZ1 1133 aa9.26□□□□□ -0.93
SCFD1-217ENST00000555953 CCDC102BQ68D86 513 aa9.26□□□□□ -0.93
SCFD1-217ENST00000555953 LINC00114Q6XXX2 140 aa9.26□□□□□ -0.93
SCFD1-217ENST00000555953 CLUAP1Q96AJ1 413 aa9.26□□□□□ -0.93
SCFD1-217ENST00000555953 EML1O00423 815 aa9.25□□□□□ -0.93
SCFD1-217ENST00000555953 MSTNO14793 375 aa9.25□□□□□ -0.93
SCFD1-217ENST00000555953 EFSO43281 561 aa9.25□□□□□ -0.93
SCFD1-217ENST00000555953 ATP1A2P50993 1020 aa9.25□□□□□ -0.93
SCFD1-217ENST00000555953 FCHSD1Q86WN1 690 aa9.25□□□□□ -0.93
SCFD1-217ENST00000555953 SPOCK3Q9BQ16 436 aa9.25□□□□□ -0.93
SCFD1-217ENST00000555953 ZNF232Q9UNY5 417 aa9.25□□□□□ -0.93
SCFD1-217ENST00000555953 KRBA1A5PL33 1030 aa9.24□□□□□ -0.93
SCFD1-217ENST00000555953 ADH6P28332 368 aa9.24□□□□□ -0.93
SCFD1-217ENST00000555953 LRRC69Q6ZNQ3 347 aa9.24□□□□□ -0.93
SCFD1-217ENST00000555953 OGFOD1Q8N543 542 aa9.24□□□□□ -0.93
SCFD1-217ENST00000555953 C7orf43Q8WVR3 580 aa9.24□□□□□ -0.93
SCFD1-217ENST00000555953 SUV39H2Q9H5I1 410 aa9.24□□□□□ -0.93
SCFD1-217ENST00000555953 MKRN1Q9UHC7 482 aaKnown RBP9.24□□□□□ -0.93
SCFD1-217ENST00000555953 SERTM1A2A2V5 107 aa9.23□□□□□ -0.93
SCFD1-217ENST00000555953 PROCP04070 461 aa9.23□□□□□ -0.93
SCFD1-217ENST00000555953 DGKGP49619 791 aa9.23□□□□□ -0.93
SCFD1-217ENST00000555953 PCBP4P57723 403 aaKnown RBP9.23□□□□□ -0.93
SCFD1-217ENST00000555953 FNBP4Q8N3X1 1017 aaPredicted RBP9.23□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms