RNA–Protein interactions for RNA: ENST00000552130.6

VPS29-210, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,057 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-210ENST00000552130 GOLGA6L1Q8N7Z2 621 aa9.27□□□□□ -0.93
VPS29-210ENST00000552130 ZSCAN10Q96SZ4 725 aaPredicted RBP9.27□□□□□ -0.93
VPS29-210ENST00000552130 CDCA7Q9BWT1 371 aaPredicted RBP9.27□□□□□ -0.93
VPS29-210ENST00000552130 KRTAP4-8Q9BYQ9 185 aa9.27□□□□□ -0.93
VPS29-210ENST00000552130 ATXN7L1Q9ULK2 861 aaPredicted RBP9.27□□□□□ -0.93
VPS29-210ENST00000552130 ZNF330Q9Y3S2 320 aaPredicted RBP9.27□□□□□ -0.93
VPS29-210ENST00000552130 CANXP27824 592 aaKnown RBP9.26□□□□□ -0.93
VPS29-210ENST00000552130 PHKA2P46019 1235 aa9.26□□□□□ -0.93
VPS29-210ENST00000552130 C4orf17Q53FE4 359 aa9.26□□□□□ -0.93
VPS29-210ENST00000552130 CCDC85AQ96PX6 553 aaPredicted RBP9.26□□□□□ -0.93
VPS29-210ENST00000552130 IGSF5Q9NSI5 407 aa9.26□□□□□ -0.93
VPS29-210ENST00000552130 UNCXA6NJT0 531 aa9.25□□□□□ -0.93
VPS29-210ENST00000552130 SLCO4C1Q6ZQN7 724 aa9.25□□□□□ -0.93
VPS29-210ENST00000552130 BANK1Q8NDB2 785 aa9.25□□□□□ -0.93
VPS29-210ENST00000552130 SUV39H2Q9H5I1 410 aa9.25□□□□□ -0.93
VPS29-210ENST00000552130 CEP126Q9P2H0 1117 aa9.25□□□□□ -0.93
VPS29-210ENST00000552130 MSX1P28360 303 aa9.24□□□□□ -0.93
VPS29-210ENST00000552130 FAM9AQ8IZU1 332 aaPredicted RBP9.24□□□□□ -0.93
VPS29-210ENST00000552130 MTMR14Q8NCE2 650 aa9.24□□□□□ -0.93
VPS29-210ENST00000552130 CRISPLD1Q9H336 500 aa9.24□□□□□ -0.93
VPS29-210ENST00000552130 RUBCNLQ9H714 662 aa9.24□□□□□ -0.93
VPS29-210ENST00000552130 BNIP3LO60238 219 aa9.23□□□□□ -0.93
VPS29-210ENST00000552130 ESF1Q9H501 851 aaKnown RBP9.23□□□□□ -0.93
VPS29-210ENST00000552130 GNASQ5JWF2 1037 aa9.22□□□□□ -0.93
VPS29-210ENST00000552130 SND1Q7KZF4 910 aaKnown RBP eCLIP9.22□□□□□ -0.934e-6■■■□□ 14.7
VPS29-210ENST00000552130 PPARGC1BQ86YN6 1023 aaKnown RBP9.22□□□□□ -0.93
VPS29-210ENST00000552130 Q8N3U1 123 aa9.22□□□□□ -0.93
VPS29-210ENST00000552130 CWC22Q9HCG8 908 aaKnown RBP9.22□□□□□ -0.93
VPS29-210ENST00000552130 DNAAF2Q9NVR5 837 aaKnown RBP9.22□□□□□ -0.93
VPS29-210ENST00000552130 NDUFB9Q9Y6M9 179 aa9.22□□□□□ -0.93
VPS29-210ENST00000552130 FURINP09958 794 aa9.21□□□□□ -0.94
VPS29-210ENST00000552130 BMP4P12644 408 aa9.21□□□□□ -0.94
VPS29-210ENST00000552130 FGFR3P22607 806 aa9.21□□□□□ -0.94
VPS29-210ENST00000552130 CTBSQ01459 385 aa9.21□□□□□ -0.94
VPS29-210ENST00000552130 PHTF2Q8N3S3 785 aa9.21□□□□□ -0.94
VPS29-210ENST00000552130 ABHD17AQ96GS6 310 aa9.21□□□□□ -0.94
VPS29-210ENST00000552130 RRAGCQ9HB90 399 aa9.21□□□□□ -0.94
VPS29-210ENST00000552130 GGA1Q9UJY5 639 aa9.21□□□□□ -0.94
VPS29-210ENST00000552130 COG6Q9Y2V7 657 aa9.21□□□□□ -0.94
VPS29-210ENST00000552130 MYCP01106 439 aaPredicted RBP9.2□□□□□ -0.94
VPS29-210ENST00000552130 CSB-PGBD3P0DP91 1061 aa9.2□□□□□ -0.94
VPS29-210ENST00000552130 EPXP11678 715 aa9.2□□□□□ -0.94
VPS29-210ENST00000552130 DGKGP49619 791 aa9.2□□□□□ -0.94
VPS29-210ENST00000552130 EFHC2Q5JST6 749 aa9.2□□□□□ -0.94
VPS29-210ENST00000552130 TMEM214Q6NUQ4 689 aaKnown RBP9.2□□□□□ -0.94
VPS29-210ENST00000552130 PGBD3Q8N328 593 aa9.2□□□□□ -0.94
VPS29-210ENST00000552130 RHBDD1Q8TEB9 315 aa9.2□□□□□ -0.94
VPS29-210ENST00000552130 BTBD6Q96KE9 485 aa9.2□□□□□ -0.94
VPS29-210ENST00000552130 GNB5O14775 395 aa9.19□□□□□ -0.94
VPS29-210ENST00000552130 ARAFP10398 606 aa9.19□□□□□ -0.94
VPS29-210ENST00000552130 ESCO1Q5FWF5 840 aa9.19□□□□□ -0.94
VPS29-210ENST00000552130 ETNK1Q9HBU6 452 aa9.19□□□□□ -0.94
VPS29-210ENST00000552130 HCN2Q9UL51 889 aa9.19□□□□□ -0.94
VPS29-210ENST00000552130 USTQ9Y2C2 406 aa9.19□□□□□ -0.94
VPS29-210ENST00000552130 IVNS1ABPQ9Y6Y0 642 aa9.19□□□□□ -0.94
VPS29-210ENST00000552130 C1QTNF9BB2RNN3 333 aa9.18□□□□□ -0.94
VPS29-210ENST00000552130 GRIN2CQ14957 1233 aa9.18□□□□□ -0.94
VPS29-210ENST00000552130 TSGA10IPQ3SY00 556 aa9.18□□□□□ -0.94
VPS29-210ENST00000552130 CD163Q86VB7 1156 aa9.18□□□□□ -0.94
VPS29-210ENST00000552130 CHIC2Q9UKJ5 165 aa9.18□□□□□ -0.94
VPS29-210ENST00000552130 ITGB7P26010 798 aa9.17□□□□□ -0.94
VPS29-210ENST00000552130 PIK3R2O00459 728 aa9.16□□□□□ -0.94
VPS29-210ENST00000552130 STAU1O95793 577 aaKnown RBP9.16□□□□□ -0.94
VPS29-210ENST00000552130 GTF2E1P29083 439 aaPredicted RBP9.16□□□□□ -0.94
VPS29-210ENST00000552130 RNF135Q8IUD6 432 aa9.16□□□□□ -0.94
VPS29-210ENST00000552130 SNRKQ9NRH2 765 aa9.16□□□□□ -0.94
VPS29-210ENST00000552130 RBM47A0AV96 593 aaKnown RBP9.15□□□□□ -0.94
VPS29-210ENST00000552130 ATP4AP20648 1035 aa9.15□□□□□ -0.94
VPS29-210ENST00000552130 CHRNA4P43681 627 aa9.15□□□□□ -0.94
VPS29-210ENST00000552130 KLF15Q9UIH9 416 aa9.15□□□□□ -0.94
VPS29-210ENST00000552130 PCDHGC4Q9Y5F7 938 aa9.15□□□□□ -0.94
VPS29-210ENST00000552130 AMPD1P23109 780 aa9.14□□□□□ -0.95
VPS29-210ENST00000552130 USP4Q13107 963 aa9.14□□□□□ -0.95
VPS29-210ENST00000552130 FIGNL1Q6PIW4 674 aa9.14□□□□□ -0.95
VPS29-210ENST00000552130 NLRP8Q86W28 1048 aa9.14□□□□□ -0.95
VPS29-210ENST00000552130 ZNF295-AS1Q8N0V1 137 aa9.14□□□□□ -0.95
VPS29-210ENST00000552130 C1orf216Q8TAB5 229 aa9.14□□□□□ -0.95
VPS29-210ENST00000552130 ZCCHC2Q9C0B9 1178 aaKnown RBP9.14□□□□□ -0.95
VPS29-210ENST00000552130 ARID4BQ4LE39 1312 aaPredicted RBP9.13□□□□□ -0.95
VPS29-210ENST00000552130 SCNN1DP51172 638 aa9.13□□□□□ -0.95
VPS29-210ENST00000552130 FAM182BQ5T319 152 aa9.13□□□□□ -0.95
VPS29-210ENST00000552130 CALR3Q96L12 384 aaKnown RBP9.13□□□□□ -0.95
VPS29-210ENST00000552130 PSMG3-AS1Q96PY0 264 aa9.13□□□□□ -0.95
VPS29-210ENST00000552130 NEURL1BA8MQ27 555 aa9.12□□□□□ -0.95
VPS29-210ENST00000552130 KRTAP9-1A8MXZ3 250 aaPredicted RBP9.12□□□□□ -0.95
VPS29-210ENST00000552130 SMARCA5O60264 1052 aaPredicted RBP9.12□□□□□ -0.95
VPS29-210ENST00000552130 TLR1Q15399 786 aa9.12□□□□□ -0.95
VPS29-210ENST00000552130 CHSY3Q70JA7 882 aa9.12□□□□□ -0.95
VPS29-210ENST00000552130 PBXIP1Q96AQ6 731 aa9.12□□□□□ -0.95
VPS29-210ENST00000552130 SPATA32Q96LK8 384 aa9.12□□□□□ -0.95
VPS29-210ENST00000552130 AVENQ9NQS1 362 aaPredicted RBP9.12□□□□□ -0.95
VPS29-210ENST00000552130 NOP53Q9NZM5 478 aaKnown RBP9.12□□□□□ -0.95
VPS29-210ENST00000552130 TBC1D9Q6ZT07 1266 aa9.11□□□□□ -0.95
VPS29-210ENST00000552130 KRTAP9-2Q9BYQ4 174 aa9.11□□□□□ -0.95
VPS29-210ENST00000552130 DOLKQ9UPQ8 538 aa9.11□□□□□ -0.95
VPS29-210ENST00000552130 INHAP05111 366 aa9.1□□□□□ -0.95
VPS29-210ENST00000552130 PLA2G4AP47712 749 aa9.1□□□□□ -0.95
VPS29-210ENST00000552130 TNP2Q05952 138 aa9.1□□□□□ -0.95
VPS29-210ENST00000552130 FCHSD1Q86WN1 690 aa9.1□□□□□ -0.95
VPS29-210ENST00000552130 CERS3Q8IU89 383 aa9.1□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms