RNA–Protein interactions for RNA: ENST00000551655.1

VPS29-209, Transcript of VPS29, retromer complex component, humanhuman

TSL 5

Gene VPS29, Length 766 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-209ENST00000551655 CTCFP49711 727 aaPredicted RBP20.19■□□□□ 0.82
VPS29-209ENST00000551655 ABHD8Q96I13 439 aa20.19■□□□□ 0.82
VPS29-209ENST00000551655 WASHC2AQ641Q2 1341 aa20.19■□□□□ 0.82
VPS29-209ENST00000551655 CARMIL3Q8ND23 1372 aa20.19■□□□□ 0.82
VPS29-209ENST00000551655 VEGFBP49765 207 aa20.18■□□□□ 0.82
VPS29-209ENST00000551655 AIDAQ96BJ3 306 aa20.18■□□□□ 0.82
VPS29-209ENST00000551655 VIRMAQ69YN4 1812 aaKnown RBP20.18■□□□□ 0.82
VPS29-209ENST00000551655 CABP4P57796 275 aa20.17■□□□□ 0.82
VPS29-209ENST00000551655 INTS5Q6P9B9 1019 aaKnown RBP20.17■□□□□ 0.82
VPS29-209ENST00000551655 TTLL6Q8N841 843 aa20.17■□□□□ 0.82
VPS29-209ENST00000551655 CARD14Q9BXL6 1004 aa20.17■□□□□ 0.82
VPS29-209ENST00000551655 DICER1Q9UPY3 1922 aaKnown RBP20.17■□□□□ 0.82
VPS29-209ENST00000551655 NFIXQ14938 502 aa20.16■□□□□ 0.82
VPS29-209ENST00000551655 ZNF219Q9P2Y4 722 aaPredicted RBP20.16■□□□□ 0.82
VPS29-209ENST00000551655 DPY19L2Q6NUT2 758 aa20.15■□□□□ 0.82
VPS29-209ENST00000551655 C2CD5Q86YS7 1000 aa20.15■□□□□ 0.82
VPS29-209ENST00000551655 DDNO94850 711 aaPredicted RBP20.14■□□□□ 0.81
VPS29-209ENST00000551655 EIF4A2Q14240 407 aaKnown RBP20.14■□□□□ 0.81
VPS29-209ENST00000551655 PASKQ96RG2 1323 aa20.13■□□□□ 0.81
VPS29-209ENST00000551655 ZPR1O75312 459 aa20.13■□□□□ 0.81
VPS29-209ENST00000551655 ERFEQ4G0M1 354 aa20.13■□□□□ 0.81
VPS29-209ENST00000551655 WBP1LQ9NX94 342 aa20.13■□□□□ 0.81
VPS29-209ENST00000551655 FER1L6Q2WGJ9 1857 aa20.12■□□□□ 0.81
VPS29-209ENST00000551655 HSPA8P11142 646 aaKnown RBP20.12■□□□□ 0.81
VPS29-209ENST00000551655 ZNF530Q6P9A1 599 aaPredicted RBP20.12■□□□□ 0.81
VPS29-209ENST00000551655 PCDH10Q9P2E7 1040 aa20.12■□□□□ 0.81
VPS29-209ENST00000551655 POLKQ9UBT6 870 aa20.12■□□□□ 0.81
VPS29-209ENST00000551655 COL11A2P13942 1736 aaPredicted RBP20.12■□□□□ 0.81
VPS29-209ENST00000551655 ANKRD31Q8N7Z5 1873 aa20.11■□□□□ 0.81
VPS29-209ENST00000551655 SOS1Q07889 1333 aaPredicted RBP20.11■□□□□ 0.81
VPS29-209ENST00000551655 SERPINB2P05120 415 aa20.11■□□□□ 0.81
VPS29-209ENST00000551655 DNAJC10Q8IXB1 793 aa20.11■□□□□ 0.81
VPS29-209ENST00000551655 NFATC2IPQ8NCF5 419 aa20.11■□□□□ 0.81
VPS29-209ENST00000551655 C21orf2O43822 256 aa20.1■□□□□ 0.81
VPS29-209ENST00000551655 HSP90AB1P08238 724 aaKnown RBP20.1■□□□□ 0.81
VPS29-209ENST00000551655 BCL2L12Q9HB09 334 aa20.1■□□□□ 0.81
VPS29-209ENST00000551655 CCDC85CA6NKD9 419 aa20.09■□□□□ 0.81
VPS29-209ENST00000551655 MLLT1Q03111 559 aaPredicted RBP20.09■□□□□ 0.81
VPS29-209ENST00000551655 CACNA1SQ13698 1873 aa20.08■□□□□ 0.81
VPS29-209ENST00000551655 H0YIN7 160 aa20.08■□□□□ 0.81
VPS29-209ENST00000551655 MTHFSP49914 203 aa20.08■□□□□ 0.81
VPS29-209ENST00000551655 TMEM88BA6NKF7 163 aa20.07■□□□□ 0.8
VPS29-209ENST00000551655 TNNT2P45379 298 aaPredicted RBP20.07■□□□□ 0.8
VPS29-209ENST00000551655 CCDC24Q8N4L8 307 aa20.07■□□□□ 0.8
VPS29-209ENST00000551655 ZNF622Q969S3 477 aaKnown RBP eCLIP20.07■□□□□ 0.8
VPS29-209ENST00000551655 NARFQ9UHQ1 456 aa20.07■□□□□ 0.8
VPS29-209ENST00000551655 COL15A1P39059 1388 aa20.07■□□□□ 0.8
VPS29-209ENST00000551655 PLEKHO1Q53GL0 409 aaPredicted RBP20.06■□□□□ 0.8
VPS29-209ENST00000551655 BICDL1Q6ZP65 573 aa20.06■□□□□ 0.8
VPS29-209ENST00000551655 ITGBL1O95965 494 aaPredicted RBP20.05■□□□□ 0.8
VPS29-209ENST00000551655 LDHDQ86WU2 507 aa20.05■□□□□ 0.8
VPS29-209ENST00000551655 TNRC18O15417 2968 aaPredicted RBP20.04■□□□□ 0.8
VPS29-209ENST00000551655 SCN11AQ9UI33 1791 aa20.04■□□□□ 0.8
VPS29-209ENST00000551655 AEBP1Q8IUX7 1158 aa20.04■□□□□ 0.8
VPS29-209ENST00000551655 TAF1DQ9H5J8 278 aaPredicted RBP20.04■□□□□ 0.8
VPS29-209ENST00000551655 ZBTB1Q9Y2K1 713 aa20.04■□□□□ 0.8
VPS29-209ENST00000551655 SLC24A1O60721 1099 aa20.03■□□□□ 0.8
VPS29-209ENST00000551655 CYP19A1P11511 503 aaPredicted RBP20.03■□□□□ 0.8
VPS29-209ENST00000551655 SCN4AP35499 1836 aa20.02■□□□□ 0.8
VPS29-209ENST00000551655 SLX4Q8IY92 1834 aa20.02■□□□□ 0.8
VPS29-209ENST00000551655 EAPPQ56P03 285 aaPredicted RBP20.02■□□□□ 0.8
VPS29-209ENST00000551655 TAOK3Q9H2K8 898 aa20.02■□□□□ 0.8
VPS29-209ENST00000551655 ADAMTSL1Q8N6G6 1762 aa20.01■□□□□ 0.79
VPS29-209ENST00000551655 RGS19P49795 217 aa20.01■□□□□ 0.79
VPS29-209ENST00000551655 C1orf141Q5JVX7 400 aa20.01■□□□□ 0.79
VPS29-209ENST00000551655 SLC39A6Q13433 755 aa20■□□□□ 0.79
VPS29-209ENST00000551655 DEFB115Q30KQ5 88 aa20■□□□□ 0.79
VPS29-209ENST00000551655 WDR33Q9C0J8 1336 aaKnown RBP20■□□□□ 0.79
VPS29-209ENST00000551655 IQCA1LA6NCM1 817 aa19.99■□□□□ 0.79
VPS29-209ENST00000551655 RASSF10A6NK89 507 aa19.99■□□□□ 0.79
VPS29-209ENST00000551655 AMOTQ4VCS5 1084 aa19.99■□□□□ 0.79
VPS29-209ENST00000551655 CLEC11AQ9Y240 323 aa19.99■□□□□ 0.79
VPS29-209ENST00000551655 LTBP3Q9NS15 1303 aa19.99■□□□□ 0.79
VPS29-209ENST00000551655 TBC1D9BQ66K14 1250 aa19.98■□□□□ 0.79
VPS29-209ENST00000551655 L3MBTL3Q96JM7 780 aaPredicted RBP19.98■□□□□ 0.79
VPS29-209ENST00000551655 ZNF541Q9H0D2 1346 aa19.98■□□□□ 0.79
VPS29-209ENST00000551655 CANXP27824 592 aaKnown RBP19.97■□□□□ 0.79
VPS29-209ENST00000551655 MAP1SQ66K74 1059 aaPredicted RBP19.97■□□□□ 0.79
VPS29-209ENST00000551655 CFAP44Q96MT7 982 aa19.97■□□□□ 0.79
VPS29-209ENST00000551655 TSKSQ9UJT2 592 aa19.97■□□□□ 0.79
VPS29-209ENST00000551655 THSD7BQ9C0I4 1608 aa19.96■□□□□ 0.79
VPS29-209ENST00000551655 MAP2K1Q02750 393 aaPredicted RBP19.96■□□□□ 0.79
VPS29-209ENST00000551655 PRR5LQ6MZQ0 368 aa19.96■□□□□ 0.79
VPS29-209ENST00000551655 ABT1Q9ULW3 272 aaKnown RBP19.96■□□□□ 0.79
VPS29-209ENST00000551655 ARFGEF2Q9Y6D5 1785 aa19.95■□□□□ 0.78
VPS29-209ENST00000551655 SCN7AQ01118 1682 aa19.95■□□□□ 0.78
VPS29-209ENST00000551655 PRPF40BQ6NWY9 871 aaKnown RBP19.95■□□□□ 0.78
VPS29-209ENST00000551655 BRIP1Q9BX63 1249 aa19.95■□□□□ 0.78
VPS29-209ENST00000551655 LGR6Q9HBX8 967 aa19.95■□□□□ 0.78
VPS29-209ENST00000551655 PDE6BP35913 854 aa19.94■□□□□ 0.78
VPS29-209ENST00000551655 FMR1Q06787 632 aaKnown RBP eCLIP19.94■□□□□ 0.78
VPS29-209ENST00000551655 GRM1Q13255 1194 aa19.94■□□□□ 0.78
VPS29-209ENST00000551655 SLC52A2Q9HAB3 445 aa19.94■□□□□ 0.78
VPS29-209ENST00000551655 CDCA8Q53HL2 280 aa19.93■□□□□ 0.78
VPS29-209ENST00000551655 CNTROBQ8N137 903 aa19.93■□□□□ 0.78
VPS29-209ENST00000551655 RNF123Q5XPI4 1314 aa19.93■□□□□ 0.78
VPS29-209ENST00000551655 EPHX2P34913 555 aa19.92■□□□□ 0.78
VPS29-209ENST00000551655 HACL1Q9UJ83 578 aa19.92■□□□□ 0.78
VPS29-209ENST00000551655 LTBP1Q14766 1721 aa19.92■□□□□ 0.78
VPS29-209ENST00000551655 MRC1P22897 1456 aa19.92■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 7.6 ms