RNA–Protein interactions for RNA: ENST00000547394.6

CUX1-212, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,878 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-212ENST00000547394 C9orf78Q9NZ63 289 aaPredicted RBP13.69□□□□□ -0.22
CUX1-212ENST00000547394 RBM25P49756 843 aaKnown RBP13.69□□□□□ -0.22
CUX1-212ENST00000547394 SPG7Q9UQ90 795 aa13.68□□□□□ -0.22
CUX1-212ENST00000547394 ALS2Q96Q42 1657 aa13.68□□□□□ -0.22
CUX1-212ENST00000547394 MX1P20591 662 aa13.67□□□□□ -0.22
CUX1-212ENST00000547394 PDIA6Q15084 440 aa13.67□□□□□ -0.22
CUX1-212ENST00000547394 IFNL2Q8IZJ0 200 aa13.67□□□□□ -0.22
CUX1-212ENST00000547394 KLHDC4Q8TBB5 520 aa13.67□□□□□ -0.22
CUX1-212ENST00000547394 ARXQ96QS3 562 aa13.67□□□□□ -0.22
CUX1-212ENST00000547394 PTCD1O75127 700 aaKnown RBP13.67□□□□□ -0.22
CUX1-212ENST00000547394 OS9Q13438 667 aaPredicted RBP13.67□□□□□ -0.22
CUX1-212ENST00000547394 XAGE3Q8WTP9 111 aa13.67□□□□□ -0.22
CUX1-212ENST00000547394 HSP90AB1P08238 724 aaKnown RBP13.66□□□□□ -0.22
CUX1-212ENST00000547394 LARP1Q6PKG0 1096 aaKnown RBP13.66□□□□□ -0.22
CUX1-212ENST00000547394 COPS6Q7L5N1 327 aa13.66□□□□□ -0.22
CUX1-212ENST00000547394 SIL1Q9H173 461 aa13.66□□□□□ -0.22
CUX1-212ENST00000547394 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP13.66□□□□□ -0.22
CUX1-212ENST00000547394 IBTKQ9P2D0 1353 aaPredicted RBP13.66□□□□□ -0.22
CUX1-212ENST00000547394 CABP4P57796 275 aa13.66□□□□□ -0.22
CUX1-212ENST00000547394 RIC3Q7Z5B4 369 aa13.66□□□□□ -0.22
CUX1-212ENST00000547394 KIF1AQ12756 1690 aa13.66□□□□□ -0.22
CUX1-212ENST00000547394 LMTK3Q96Q04 1460 aa13.65□□□□□ -0.22
CUX1-212ENST00000547394 TTC5Q8N0Z6 440 aa13.65□□□□□ -0.22
CUX1-212ENST00000547394 IL25Q9H293 177 aa13.65□□□□□ -0.22
CUX1-212ENST00000547394 NCAPD2Q15021 1401 aa13.65□□□□□ -0.22
CUX1-212ENST00000547394 LMO7Q8WWI1 1683 aa13.65□□□□□ -0.22
CUX1-212ENST00000547394 ATP5J2-PTCD1G3V325 749 aa13.65□□□□□ -0.22
CUX1-212ENST00000547394 KSR2Q6VAB6 950 aa13.65□□□□□ -0.22
CUX1-212ENST00000547394 SSH3Q8TE77 659 aa13.65□□□□□ -0.22
CUX1-212ENST00000547394 HSP90AA1P07900 732 aaKnown RBP13.65□□□□□ -0.22
CUX1-212ENST00000547394 ZNF330Q9Y3S2 320 aaPredicted RBP13.65□□□□□ -0.22
CUX1-212ENST00000547394 KDM3BQ7LBC6 1761 aa13.64□□□□□ -0.23
CUX1-212ENST00000547394 HOXB7P09629 217 aa13.64□□□□□ -0.23
CUX1-212ENST00000547394 NOL8Q76FK4 1167 aaKnown RBP13.64□□□□□ -0.23
CUX1-212ENST00000547394 RHPN1Q8TCX5 695 aa13.64□□□□□ -0.23
CUX1-212ENST00000547394 SUCLG2Q96I99 432 aa13.64□□□□□ -0.23
CUX1-212ENST00000547394 MYD88Q99836 296 aa13.64□□□□□ -0.23
CUX1-212ENST00000547394 USP26Q9BXU7 913 aa13.64□□□□□ -0.23
CUX1-212ENST00000547394 PHRF1Q9P1Y6 1649 aaKnown RBP13.64□□□□□ -0.23
CUX1-212ENST00000547394 IGKV5-2P06315 115 aa13.63□□□□□ -0.23
CUX1-212ENST00000547394 DDX21Q9NR30 783 aaKnown RBP eCLIP13.63□□□□□ -0.231e-7■□□□□ 10.9
CUX1-212ENST00000547394 EVA1CP58658 441 aa13.63□□□□□ -0.23
CUX1-212ENST00000547394 BICC1Q9H694 974 aaKnown RBP13.63□□□□□ -0.23
CUX1-212ENST00000547394 SALL3Q9BXA9 1300 aa13.63□□□□□ -0.23
CUX1-212ENST00000547394 HEG1Q9ULI3 1381 aa13.62□□□□□ -0.23
CUX1-212ENST00000547394 KAZALD1Q96I82 304 aa13.62□□□□□ -0.23
CUX1-212ENST00000547394 DCCP43146 1447 aa13.62□□□□□ -0.23
CUX1-212ENST00000547394 DCAF5Q96JK2 942 aa13.62□□□□□ -0.23
CUX1-212ENST00000547394 GZF1Q9H116 711 aaPredicted RBP13.62□□□□□ -0.23
CUX1-212ENST00000547394 HYPKQ9NX55 129 aa13.62□□□□□ -0.23
CUX1-212ENST00000547394 EPHA10Q5JZY3 1008 aa13.61□□□□□ -0.23
CUX1-212ENST00000547394 CCDC9Q9Y3X0 531 aaKnown RBP13.61□□□□□ -0.23
CUX1-212ENST00000547394 CAMTA1Q9Y6Y1 1673 aa13.61□□□□□ -0.23
CUX1-212ENST00000547394 KAT6BQ8WYB5 2073 aa13.61□□□□□ -0.23
CUX1-212ENST00000547394 XIRP1Q702N8 1843 aaKnown RBP13.61□□□□□ -0.23
CUX1-212ENST00000547394 POLA2Q14181 598 aa13.61□□□□□ -0.23
CUX1-212ENST00000547394 ZCRB1Q8TBF4 217 aaKnown RBP13.61□□□□□ -0.23
CUX1-212ENST00000547394 ANO2Q9NQ90 1003 aa13.61□□□□□ -0.23
CUX1-212ENST00000547394 GRM8O00222 908 aa13.61□□□□□ -0.23
CUX1-212ENST00000547394 CASC1Q6TDU7 716 aa13.61□□□□□ -0.23
CUX1-212ENST00000547394 PALD1Q9ULE6 856 aa13.61□□□□□ -0.23
CUX1-212ENST00000547394 A1BGP04217 495 aa13.6□□□□□ -0.23
CUX1-212ENST00000547394 STRCQ7RTU9 1775 aa13.6□□□□□ -0.23
CUX1-212ENST00000547394 A0A0G2JS52 829 aa13.6□□□□□ -0.23
CUX1-212ENST00000547394 DTNBO60941 627 aa13.6□□□□□ -0.23
CUX1-212ENST00000547394 SOS2Q07890 1332 aaPredicted RBP13.6□□□□□ -0.23
CUX1-212ENST00000547394 WDR17Q8IZU2 1322 aa13.6□□□□□ -0.23
CUX1-212ENST00000547394 COL18A1P39060 1754 aa13.6□□□□□ -0.23
CUX1-212ENST00000547394 ERC2O15083 957 aa13.59□□□□□ -0.23
CUX1-212ENST00000547394 SNRPA1P09661 255 aaKnown RBP13.59□□□□□ -0.23
CUX1-212ENST00000547394 GSE1Q14687 1217 aa13.59□□□□□ -0.23
CUX1-212ENST00000547394 LINS1Q8NG48 757 aa13.59□□□□□ -0.23
CUX1-212ENST00000547394 CCDC8Q9H0W5 538 aaPredicted RBP13.59□□□□□ -0.23
CUX1-212ENST00000547394 OSBPL3Q9H4L5 887 aa13.59□□□□□ -0.23
CUX1-212ENST00000547394 DDX58O95786 925 aaKnown RBP13.58□□□□□ -0.23
CUX1-212ENST00000547394 CHMLP26374 656 aa13.58□□□□□ -0.23
CUX1-212ENST00000547394 TTLL7Q6ZT98 887 aa13.58□□□□□ -0.23
CUX1-212ENST00000547394 ANKRD13DQ6ZTN6 518 aa13.58□□□□□ -0.23
CUX1-212ENST00000547394 UBE3BQ7Z3V4 1068 aa13.58□□□□□ -0.23
CUX1-212ENST00000547394 FMNL2Q96PY5 1086 aa13.58□□□□□ -0.23
CUX1-212ENST00000547394 BTG4Q9NY30 223 aa13.58□□□□□ -0.23
CUX1-212ENST00000547394 TLR7Q9NYK1 1049 aaKnown RBP13.58□□□□□ -0.23
CUX1-212ENST00000547394 PXDNLA1KZ92 1463 aa13.58□□□□□ -0.24
CUX1-212ENST00000547394 NBPF26B4DH59 902 aa13.58□□□□□ -0.24
CUX1-212ENST00000547394 K7ELQ4 463 aaPredicted RBP13.58□□□□□ -0.24
CUX1-212ENST00000547394 NBPF14Q5TI25 921 aa13.58□□□□□ -0.24
CUX1-212ENST00000547394 NBPF10Q6P3W6 841 aaKnown RBP13.58□□□□□ -0.24
CUX1-212ENST00000547394 NBPF15Q8N660 670 aa13.58□□□□□ -0.24
CUX1-212ENST00000547394 ESYT1Q9BSJ8 1104 aa13.58□□□□□ -0.24
CUX1-212ENST00000547394 CACNA1FO60840 1977 aa13.58□□□□□ -0.24
CUX1-212ENST00000547394 NEURL1BA8MQ27 555 aa13.57□□□□□ -0.24
CUX1-212ENST00000547394 PI4K2BQ8TCG2 481 aa13.57□□□□□ -0.24
CUX1-212ENST00000547394 KIF1BPQ96EK5 621 aa13.57□□□□□ -0.24
CUX1-212ENST00000547394 ZBTB3Q9H5J0 574 aa13.57□□□□□ -0.24
CUX1-212ENST00000547394 CHMP5Q9NZZ3 219 aa13.57□□□□□ -0.24
CUX1-212ENST00000547394 NDUFB9Q9Y6M9 179 aa13.57□□□□□ -0.24
CUX1-212ENST00000547394 SNX21Q969T3 373 aa13.57□□□□□ -0.24
CUX1-212ENST00000547394 LARP6Q9BRS8 491 aaKnown RBP13.57□□□□□ -0.24
CUX1-212ENST00000547394 UPF3BQ9BZI7 483 aaKnown RBP13.57□□□□□ -0.24
CUX1-212ENST00000547394 IL2RBP14784 551 aa13.57□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms