RNA–Protein interactions for RNA: ENST00000541204.5

RNF4-222, Transcript of ring finger protein 4, humanhuman

TSL 1 (best) BASIC

Gene RNF4, Length 2,796 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-222ENST00000541204 PROSER3Q2NL68 480 aa15.29■□□□□ 0.04
RNF4-222ENST00000541204 CAVIN1Q6NZI2 390 aaKnown RBP15.29■□□□□ 0.04
RNF4-222ENST00000541204 SRCIN1Q9C0H9 1055 aa15.29■□□□□ 0.04
RNF4-222ENST00000541204 NBPF7P0C2Y1 421 aaPredicted RBP15.29■□□□□ 0.04
RNF4-222ENST00000541204 ATP8B2P98198 1209 aa15.29■□□□□ 0.04
RNF4-222ENST00000541204 IL1RAPL2Q9NP60 686 aa15.29■□□□□ 0.04
RNF4-222ENST00000541204 LMBRD1Q9NUN5 540 aa15.29■□□□□ 0.04
RNF4-222ENST00000541204 IBTKQ9P2D0 1353 aaPredicted RBP15.28■□□□□ 0.04
RNF4-222ENST00000541204 REC8O95072 547 aa15.28■□□□□ 0.04
RNF4-222ENST00000541204 CCDC173Q0VFZ6 552 aa15.28■□□□□ 0.04
RNF4-222ENST00000541204 SLC39A6Q13433 755 aa15.28■□□□□ 0.04
RNF4-222ENST00000541204 LRRCC1Q9C099 1032 aa15.28■□□□□ 0.04
RNF4-222ENST00000541204 ERBB3P21860 1342 aa15.28■□□□□ 0.04
RNF4-222ENST00000541204 PDE1AP54750 535 aa15.28■□□□□ 0.04
RNF4-222ENST00000541204 UBE2Q2Q8WVN8 375 aa15.28■□□□□ 0.04
RNF4-222ENST00000541204 ERC2O15083 957 aa15.27■□□□□ 0.04
RNF4-222ENST00000541204 RAPGEF4Q8WZA2 1011 aa15.27■□□□□ 0.04
RNF4-222ENST00000541204 CWC22Q9HCG8 908 aaKnown RBP15.27■□□□□ 0.04
RNF4-222ENST00000541204 FAM208AQ9UK61 1670 aaKnown RBP15.27■□□□□ 0.03
RNF4-222ENST00000541204 AIMP1Q12904 312 aaKnown RBP15.26■□□□□ 0.03
RNF4-222ENST00000541204 ZSCAN23Q3MJ62 389 aa15.26■□□□□ 0.03
RNF4-222ENST00000541204 PPP1R42Q7Z4L9 355 aa15.26■□□□□ 0.03
RNF4-222ENST00000541204 DNAAF4Q8WXU2 420 aa15.26■□□□□ 0.03
RNF4-222ENST00000541204 PPP1R9BQ96SB3 815 aa15.26■□□□□ 0.03
RNF4-222ENST00000541204 ANP32BQ92688 251 aaKnown RBP15.26■□□□□ 0.03
RNF4-222ENST00000541204 CHAMP1Q96JM3 812 aa15.26■□□□□ 0.03
RNF4-222ENST00000541204 ZDHHC9Q9Y397 364 aa15.26■□□□□ 0.03
RNF4-222ENST00000541204 SOS1Q07889 1333 aaPredicted RBP15.26■□□□□ 0.03
RNF4-222ENST00000541204 PRPF40AO75400 957 aaKnown RBP15.25■□□□□ 0.03
RNF4-222ENST00000541204 SURF6O75683 361 aaKnown RBP15.25■□□□□ 0.03
RNF4-222ENST00000541204 RILPL2Q969X0 211 aa15.25■□□□□ 0.03
RNF4-222ENST00000541204 SLIT3O75094 1523 aa15.25■□□□□ 0.03
RNF4-222ENST00000541204 TRIM6-TRIM34B2RNG4 842 aa15.25■□□□□ 0.03
RNF4-222ENST00000541204 SRGAP3O43295 1099 aa15.25■□□□□ 0.03
RNF4-222ENST00000541204 GIGYF1O75420 1035 aaPredicted RBP15.25■□□□□ 0.03
RNF4-222ENST00000541204 ZNF445P59923 1031 aa15.25■□□□□ 0.03
RNF4-222ENST00000541204 NUTM1Q86Y26 1132 aa15.25■□□□□ 0.03
RNF4-222ENST00000541204 MX1P20591 662 aa15.24■□□□□ 0.03
RNF4-222ENST00000541204 BEND3Q5T5X7 828 aa15.24■□□□□ 0.03
RNF4-222ENST00000541204 OSBPL3Q9H4L5 887 aa15.24■□□□□ 0.03
RNF4-222ENST00000541204 DBF4Q9UBU7 674 aaPredicted RBP15.24■□□□□ 0.03
RNF4-222ENST00000541204 MAP3K2Q9Y2U5 619 aa15.24■□□□□ 0.03
RNF4-222ENST00000541204 MST1RQ04912 1400 aa15.24■□□□□ 0.03
RNF4-222ENST00000541204 CWF19L2Q2TBE0 894 aaKnown RBP15.24■□□□□ 0.03
RNF4-222ENST00000541204 NFATC2IPQ8NCF5 419 aa15.24■□□□□ 0.03
RNF4-222ENST00000541204 MAP4K4O95819 1239 aaPredicted RBP15.23■□□□□ 0.03
RNF4-222ENST00000541204 FOXD4L5Q5VV16 416 aaPredicted RBP15.23■□□□□ 0.03
RNF4-222ENST00000541204 GPT2Q8TD30 523 aa15.23■□□□□ 0.03
RNF4-222ENST00000541204 FOXD4L4Q8WXT5 416 aaPredicted RBP15.23■□□□□ 0.03
RNF4-222ENST00000541204 RBM27Q9P2N5 1060 aaKnown RBP15.23■□□□□ 0.03
RNF4-222ENST00000541204 PIP4K2AP48426 406 aaPredicted RBP15.23■□□□□ 0.03
RNF4-222ENST00000541204 NEK4P51957 841 aa15.23■□□□□ 0.03
RNF4-222ENST00000541204 DNAJC5Q9H3Z4 198 aa15.23■□□□□ 0.03
RNF4-222ENST00000541204 ADCY9O60503 1353 aa15.22■□□□□ 0.03
RNF4-222ENST00000541204 HOXB7P09629 217 aa15.22■□□□□ 0.03
RNF4-222ENST00000541204 MYL6BP14649 208 aa15.22■□□□□ 0.03
RNF4-222ENST00000541204 CADPS2Q86UW7 1296 aa15.22■□□□□ 0.03
RNF4-222ENST00000541204 TATP17735 454 aaPredicted RBP15.22■□□□□ 0.03
RNF4-222ENST00000541204 RBSNQ9H1K0 784 aa15.22■□□□□ 0.03
RNF4-222ENST00000541204 MED1Q15648 1581 aaPredicted RBP15.22■□□□□ 0.03
RNF4-222ENST00000541204 TRPM3Q9HCF6 1732 aaPredicted RBP15.21■□□□□ 0.03
RNF4-222ENST00000541204 PRIM1P49642 420 aaKnown RBP15.21■□□□□ 0.03
RNF4-222ENST00000541204 C9orf78Q9NZ63 289 aaPredicted RBP15.21■□□□□ 0.03
RNF4-222ENST00000541204 NPHP3Q7Z494 1330 aa15.21■□□□□ 0.03
RNF4-222ENST00000541204 ZSCAN30Q86W11 494 aa15.21■□□□□ 0.03
RNF4-222ENST00000541204 UNC5CLQ8IV45 518 aa15.21■□□□□ 0.03
RNF4-222ENST00000541204 TMX3Q96JJ7 454 aa15.21■□□□□ 0.03
RNF4-222ENST00000541204 RGPD5Q99666 1765 aa15.2■□□□□ 0.02
RNF4-222ENST00000541204 SSH3Q8TE77 659 aa15.2■□□□□ 0.02
RNF4-222ENST00000541204 OS9Q13438 667 aaPredicted RBP15.2■□□□□ 0.02
RNF4-222ENST00000541204 ESYT1Q9BSJ8 1104 aa15.2■□□□□ 0.02
RNF4-222ENST00000541204 ZNF790Q6PG37 636 aa15.19■□□□□ 0.02
RNF4-222ENST00000541204 PALD1Q9ULE6 856 aa15.19■□□□□ 0.02
RNF4-222ENST00000541204 NSFL1CQ9UNZ2 370 aaKnown RBP15.19■□□□□ 0.02
RNF4-222ENST00000541204 SALL3Q9BXA9 1300 aa15.19■□□□□ 0.02
RNF4-222ENST00000541204 PHKG2P15735 406 aa15.19■□□□□ 0.02
RNF4-222ENST00000541204 NOL8Q76FK4 1167 aaKnown RBP15.19■□□□□ 0.02
RNF4-222ENST00000541204 SLC52A2Q9HAB3 445 aa15.19■□□□□ 0.02
RNF4-222ENST00000541204 TMEM63CQ9P1W3 806 aa15.19■□□□□ 0.02
RNF4-222ENST00000541204 SPG7Q9UQ90 795 aa15.19■□□□□ 0.02
RNF4-222ENST00000541204 LMO7Q8WWI1 1683 aa15.18■□□□□ 0.02
RNF4-222ENST00000541204 PHRF1Q9P1Y6 1649 aaKnown RBP15.18■□□□□ 0.02
RNF4-222ENST00000541204 RHPN1Q8TCX5 695 aa15.18■□□□□ 0.02
RNF4-222ENST00000541204 MSNP26038 577 aaKnown RBP15.18■□□□□ 0.02
RNF4-222ENST00000541204 KSR2Q6VAB6 950 aa15.18■□□□□ 0.02
RNF4-222ENST00000541204 ANO2Q9NQ90 1003 aa15.18■□□□□ 0.02
RNF4-222ENST00000541204 PA2G4Q9UQ80 394 aaKnown RBP15.18■□□□□ 0.02
RNF4-222ENST00000541204 PXDNLA1KZ92 1463 aa15.18■□□□□ 0.02
RNF4-222ENST00000541204 NCAPD2Q15021 1401 aa15.17■□□□□ 0.02
RNF4-222ENST00000541204 MEGF6O75095 1541 aa15.17■□□□□ 0.02
RNF4-222ENST00000541204 STRCP1A6NGW2 1772 aa15.17■□□□□ 0.02
RNF4-222ENST00000541204 ZNF496Q96IT1 587 aaPredicted RBP15.17■□□□□ 0.02
RNF4-222ENST00000541204 CHMP4AQ9BY43 222 aa15.17■□□□□ 0.02
RNF4-222ENST00000541204 KDM3BQ7LBC6 1761 aa15.17■□□□□ 0.02
RNF4-222ENST00000541204 SYCE3A1L190 88 aa15.17■□□□□ 0.02
RNF4-222ENST00000541204 HSP90AA2PQ14568 343 aaPredicted RBP15.17■□□□□ 0.02
RNF4-222ENST00000541204 KIF1AQ12756 1690 aa15.16■□□□□ 0.02
RNF4-222ENST00000541204 CYP27B1O15528 508 aa15.16■□□□□ 0.02
RNF4-222ENST00000541204 CHMLP26374 656 aa15.16■□□□□ 0.02
RNF4-222ENST00000541204 POLA2Q14181 598 aa15.16■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 60.7 ms