RNA–Protein interactions for RNA: ENST00000539244.6

SS18-204, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 977 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-204ENST00000539244 MTHFSDQ2M296 383 aaKnown RBP18.42■□□□□ 0.54
SS18-204ENST00000539244 USPL1Q5W0Q7 1092 aa18.42■□□□□ 0.54
SS18-204ENST00000539244 NMRK2Q9NPI5 230 aa18.42■□□□□ 0.54
SS18-204ENST00000539244 NARFQ9UHQ1 456 aa18.42■□□□□ 0.54
SS18-204ENST00000539244 AFDNP55196 1824 aaKnown RBP18.42■□□□□ 0.54
SS18-204ENST00000539244 COL15A1P39059 1388 aa18.42■□□□□ 0.54
SS18-204ENST00000539244 SBF1O95248 1867 aa18.41■□□□□ 0.54
SS18-204ENST00000539244 DIAPH1O60610 1272 aaKnown RBP18.4■□□□□ 0.54
SS18-204ENST00000539244 CHRNA5P30532 468 aa18.4■□□□□ 0.54
SS18-204ENST00000539244 ZBTB1Q9Y2K1 713 aa18.4■□□□□ 0.54
SS18-204ENST00000539244 NFIXQ14938 502 aa18.39■□□□□ 0.53
SS18-204ENST00000539244 RBM46Q8TBY0 533 aaKnown RBP18.39■□□□□ 0.53
SS18-204ENST00000539244 NPC1L1Q9UHC9 1359 aa18.39■□□□□ 0.53
SS18-204ENST00000539244 COL3A1P02461 1466 aaPredicted RBP18.39■□□□□ 0.53
SS18-204ENST00000539244 DLEC1Q9Y238 1755 aa18.38■□□□□ 0.53
SS18-204ENST00000539244 BCL2L12Q9HB09 334 aa18.38■□□□□ 0.53
SS18-204ENST00000539244 DNAJC5GQ8N7S2 189 aa18.37■□□□□ 0.53
SS18-204ENST00000539244 CC2D1BQ5T0F9 858 aaKnown RBP18.36■□□□□ 0.53
SS18-204ENST00000539244 KDM2BQ8NHM5 1336 aa18.36■□□□□ 0.53
SS18-204ENST00000539244 TNRC6CQ9HCJ0 1690 aaKnown RBP18.36■□□□□ 0.53
SS18-204ENST00000539244 RNF181Q9P0P0 153 aa18.36■□□□□ 0.53
SS18-204ENST00000539244 ZC3H4Q9UPT8 1303 aaKnown RBP18.36■□□□□ 0.53
SS18-204ENST00000539244 SIPA1L3O60292 1781 aaPredicted RBP18.35■□□□□ 0.53
SS18-204ENST00000539244 WDR90Q96KV7 1748 aa18.35■□□□□ 0.53
SS18-204ENST00000539244 SERPINB2P05120 415 aa18.34■□□□□ 0.53
SS18-204ENST00000539244 EIF5P55010 431 aaKnown RBP18.34■□□□□ 0.53
SS18-204ENST00000539244 FSTL1Q12841 308 aa18.34■□□□□ 0.53
SS18-204ENST00000539244 STARD3NLO95772 234 aa18.33■□□□□ 0.52
SS18-204ENST00000539244 TTC5Q8N0Z6 440 aa18.33■□□□□ 0.52
SS18-204ENST00000539244 HEG1Q9ULI3 1381 aa18.32■□□□□ 0.52
SS18-204ENST00000539244 ZNF790Q6PG37 636 aa18.32■□□□□ 0.52
SS18-204ENST00000539244 C16orf71Q8IYS4 520 aaPredicted RBP18.32■□□□□ 0.52
SS18-204ENST00000539244 GAS2L2Q8NHY3 880 aa18.32■□□□□ 0.52
SS18-204ENST00000539244 SCN7AQ01118 1682 aa18.31■□□□□ 0.52
SS18-204ENST00000539244 A0A087WZG4 1122 aa18.31■□□□□ 0.52
SS18-204ENST00000539244 GNAT3A8MTJ3 354 aa18.31■□□□□ 0.52
SS18-204ENST00000539244 CANXP27824 592 aaKnown RBP18.31■□□□□ 0.52
SS18-204ENST00000539244 IL17REQ8NFR9 667 aa18.31■□□□□ 0.52
SS18-204ENST00000539244 ZNF496Q96IT1 587 aaPredicted RBP18.31■□□□□ 0.52
SS18-204ENST00000539244 TEX13AQ9BXU3 409 aaPredicted RBP18.31■□□□□ 0.52
SS18-204ENST00000539244 CARMIL3Q8ND23 1372 aa18.3■□□□□ 0.52
SS18-204ENST00000539244 CEMIPQ8WUJ3 1361 aa18.3■□□□□ 0.52
SS18-204ENST00000539244 LMNB1P20700 586 aa18.3■□□□□ 0.52
SS18-204ENST00000539244 RASSF7Q02833 373 aa18.3■□□□□ 0.52
SS18-204ENST00000539244 TEFQ10587 303 aa18.3■□□□□ 0.52
SS18-204ENST00000539244 TTLL6Q8N841 843 aa18.3■□□□□ 0.52
SS18-204ENST00000539244 RRAGCQ9HB90 399 aa18.3■□□□□ 0.52
SS18-204ENST00000539244 ANKRD31Q8N7Z5 1873 aa18.29■□□□□ 0.52
SS18-204ENST00000539244 H0YIN7 160 aa18.29■□□□□ 0.52
SS18-204ENST00000539244 C2CD5Q86YS7 1000 aa18.29■□□□□ 0.52
SS18-204ENST00000539244 U2SURPO15042 1029 aaKnown RBP18.28■□□□□ 0.52
SS18-204ENST00000539244 IL6STP40189 918 aaPredicted RBP18.28■□□□□ 0.52
SS18-204ENST00000539244 PRELPP51888 382 aa18.28■□□□□ 0.52
SS18-204ENST00000539244 PDZRN3Q9UPQ7 1066 aa18.28■□□□□ 0.52
SS18-204ENST00000539244 CCDC88AQ3V6T2 1871 aa18.27■□□□□ 0.52
SS18-204ENST00000539244 TBC1D9BQ66K14 1250 aa18.27■□□□□ 0.52
SS18-204ENST00000539244 TIAM2Q8IVF5 1701 aa18.26■□□□□ 0.51
SS18-204ENST00000539244 GLTPD2A6NH11 291 aa18.26■□□□□ 0.51
SS18-204ENST00000539244 NFKBIEO00221 500 aa18.26■□□□□ 0.51
SS18-204ENST00000539244 SMC1BQ8NDV3 1235 aa18.26■□□□□ 0.51
SS18-204ENST00000539244 KLRG1Q96E93 195 aa18.26■□□□□ 0.51
SS18-204ENST00000539244 FMNL2Q96PY5 1086 aa18.26■□□□□ 0.51
SS18-204ENST00000539244 BRIP1Q9BX63 1249 aa18.26■□□□□ 0.51
SS18-204ENST00000539244 BICDL1Q6ZP65 573 aa18.25■□□□□ 0.51
SS18-204ENST00000539244 JMYQ8N9B5 988 aa18.25■□□□□ 0.51
SS18-204ENST00000539244 COL11A2P13942 1736 aaPredicted RBP18.24■□□□□ 0.51
SS18-204ENST00000539244 PDE6BP35913 854 aa18.24■□□□□ 0.51
SS18-204ENST00000539244 PRR5LQ6MZQ0 368 aa18.24■□□□□ 0.51
SS18-204ENST00000539244 RSPH6AQ9H0K4 717 aa18.24■□□□□ 0.51
SS18-204ENST00000539244 BCORQ6W2J9 1755 aa18.24■□□□□ 0.51
SS18-204ENST00000539244 FER1L6Q2WGJ9 1857 aa18.24■□□□□ 0.51
SS18-204ENST00000539244 DICER1Q9UPY3 1922 aaKnown RBP18.23■□□□□ 0.51
SS18-204ENST00000539244 CAMTA2O94983 1202 aa18.23■□□□□ 0.51
SS18-204ENST00000539244 VEGFAP15692 232 aaPredicted RBP18.23■□□□□ 0.51
SS18-204ENST00000539244 PHACTR3Q96KR7 559 aa18.23■□□□□ 0.51
SS18-204ENST00000539244 TBC1D2BQ9UPU7 963 aa18.23■□□□□ 0.51
SS18-204ENST00000539244 A1BGP04217 495 aa18.22■□□□□ 0.51
SS18-204ENST00000539244 HTRA3P83110 453 aa18.22■□□□□ 0.51
SS18-204ENST00000539244 BTBD11A6QL63 1104 aa18.21■□□□□ 0.51
SS18-204ENST00000539244 PRKAR2BP31323 418 aa18.21■□□□□ 0.51
SS18-204ENST00000539244 CFAP53Q96M91 514 aa18.21■□□□□ 0.51
SS18-204ENST00000539244 LTBP3Q9NS15 1303 aa18.21■□□□□ 0.51
SS18-204ENST00000539244 KCNQ3O43525 872 aa18.2■□□□□ 0.5
SS18-204ENST00000539244 ZNF622Q969S3 477 aaKnown RBP eCLIP18.2■□□□□ 0.52e-7■□□□□ 9.4
SS18-204ENST00000539244 SETDB2Q96T68 719 aa18.2■□□□□ 0.5
SS18-204ENST00000539244 ZNF330Q9Y3S2 320 aaPredicted RBP18.2■□□□□ 0.5
SS18-204ENST00000539244 ARFGEF2Q9Y6D5 1785 aa18.19■□□□□ 0.5
SS18-204ENST00000539244 NPM2Q86SE8 214 aaKnown RBP18.19■□□□□ 0.5
SS18-204ENST00000539244 CNBD1Q8NA66 436 aa18.19■□□□□ 0.5
SS18-204ENST00000539244 PCNTO95613 3336 aa18.19■□□□□ 0.5
SS18-204ENST00000539244 POTECB2RU33 542 aa18.18■□□□□ 0.5
SS18-204ENST00000539244 C21orf2O43822 256 aa18.18■□□□□ 0.5
SS18-204ENST00000539244 CNGB1Q14028 1251 aaPredicted RBP18.18■□□□□ 0.5
SS18-204ENST00000539244 STYK1Q6J9G0 422 aa18.18■□□□□ 0.5
SS18-204ENST00000539244 DZIP3Q86Y13 1208 aaKnown RBP18.18■□□□□ 0.5
SS18-204ENST00000539244 CNKSR1Q969H4 720 aa18.18■□□□□ 0.5
SS18-204ENST00000539244 NUDCQ9Y266 331 aa18.18■□□□□ 0.5
SS18-204ENST00000539244 USP16Q9Y5T5 823 aa18.18■□□□□ 0.5
SS18-204ENST00000539244 SLX4Q8IY92 1834 aa18.18■□□□□ 0.5
SS18-204ENST00000539244 RGL2O15211 777 aa18.17■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms