RNA–Protein interactions for RNA: ENST00000534532.6

NCAPD3-213, Transcript of non-SMC condensin II complex subunit D3, human

TSL 2

Gene NCAPD3, Length 5,539 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NCAPD3-213	ENST00000534532	TTLL5	Q6EMB2	1281 aa		18.47	■□□□□ 0.55
NCAPD3-213	ENST00000534532	TXLNB	Q8N3L3	684 aa		18.47	■□□□□ 0.55
NCAPD3-213	ENST00000534532	CCDC8	Q9H0W5	538 aa	Predicted RBP	18.47	■□□□□ 0.55
NCAPD3-213	ENST00000534532		K7ELQ4	463 aa	Predicted RBP	18.46	■□□□□ 0.55
NCAPD3-213	ENST00000534532	RNF214	Q8ND24	703 aa		18.46	■□□□□ 0.55
NCAPD3-213	ENST00000534532	LMTK3	Q96Q04	1460 aa		18.46	■□□□□ 0.55
NCAPD3-213	ENST00000534532	WDR7	Q9Y4E6	1490 aa		18.46	■□□□□ 0.55
NCAPD3-213	ENST00000534532	SERPINC1	P01008	464 aa		18.46	■□□□□ 0.55
NCAPD3-213	ENST00000534532	IBSP	P21815	317 aa	Predicted RBP	18.46	■□□□□ 0.55
NCAPD3-213	ENST00000534532	CAVIN1	Q6NZI2	390 aa	Known RBP	18.46	■□□□□ 0.55
NCAPD3-213	ENST00000534532	CEP57L1	Q8IYX8	460 aa		18.46	■□□□□ 0.55
NCAPD3-213	ENST00000534532	ATP5J2-PTCD1	G3V325	749 aa		18.46	■□□□□ 0.55
NCAPD3-213	ENST00000534532	DHX8	Q14562	1220 aa	Known RBP	18.46	■□□□□ 0.55
NCAPD3-213	ENST00000534532	CCP110	O43303	1012 aa		18.45	■□□□□ 0.54
NCAPD3-213	ENST00000534532	CHMP4BP1	P59074	171 aa		18.45	■□□□□ 0.54
NCAPD3-213	ENST00000534532	ZNF213	O14771	459 aa		18.45	■□□□□ 0.54
NCAPD3-213	ENST00000534532	TSPY26P	Q9H489	355 aa		18.45	■□□□□ 0.54
NCAPD3-213	ENST00000534532	HMGB1	P09429	215 aa	Known RBP	18.45	■□□□□ 0.54
NCAPD3-213	ENST00000534532	CAST	P20810	708 aa	Known RBP	18.45	■□□□□ 0.54
NCAPD3-213	ENST00000534532	PPFIBP1	Q86W92	1011 aa		18.45	■□□□□ 0.54
NCAPD3-213	ENST00000534532	ANKRD13D	Q6ZTN6	518 aa		18.45	■□□□□ 0.54
NCAPD3-213	ENST00000534532	UBE3B	Q7Z3V4	1068 aa		18.45	■□□□□ 0.54
NCAPD3-213	ENST00000534532	TNMD	Q9H2S6	317 aa		18.45	■□□□□ 0.54
NCAPD3-213	ENST00000534532	DEF6	Q9H4E7	631 aa		18.45	■□□□□ 0.54
NCAPD3-213	ENST00000534532	PIK3R4	Q99570	1358 aa		18.44	■□□□□ 0.54
NCAPD3-213	ENST00000534532	IL2RB	P14784	551 aa		18.44	■□□□□ 0.54
NCAPD3-213	ENST00000534532	NLRP3	Q96P20	1036 aa		18.44	■□□□□ 0.54
NCAPD3-213	ENST00000534532	HDAC9	Q9UKV0	1011 aa		18.44	■□□□□ 0.54
NCAPD3-213	ENST00000534532	RARS	P54136	660 aa	Known RBP	18.44	■□□□□ 0.54
NCAPD3-213	ENST00000534532	SPATA32	Q96LK8	384 aa		18.44	■□□□□ 0.54
NCAPD3-213	ENST00000534532	GPATCH8	Q9UKJ3	1502 aa	Known RBP	18.44	■□□□□ 0.54
NCAPD3-213	ENST00000534532	CCDC192	P0DO97	292 aa		18.43	■□□□□ 0.54
NCAPD3-213	ENST00000534532	GSTO1	P78417	241 aa		18.43	■□□□□ 0.54
NCAPD3-213	ENST00000534532	RAB34	Q9BZG1	259 aa		18.43	■□□□□ 0.54
NCAPD3-213	ENST00000534532	ATP10B	O94823	1461 aa		18.43	■□□□□ 0.54
NCAPD3-213	ENST00000534532	PPP1R12B	O60237	982 aa	Predicted RBP	18.43	■□□□□ 0.54
NCAPD3-213	ENST00000534532	ANKRD18A	Q8IVF6	992 aa		18.43	■□□□□ 0.54
NCAPD3-213	ENST00000534532	NCKAP5L	Q9HCH0	1330 aa		18.43	■□□□□ 0.54
NCAPD3-213	ENST00000534532	CCDC39	Q9UFE4	941 aa		18.42	■□□□□ 0.54
NCAPD3-213	ENST00000534532	NASP	P49321	788 aa	Predicted RBP	18.42	■□□□□ 0.54
NCAPD3-213	ENST00000534532	MYCN	P04198	464 aa	Predicted RBP	18.42	■□□□□ 0.54
NCAPD3-213	ENST00000534532	UQCRFS1P1	P0C7P4	283 aa		18.42	■□□□□ 0.54
NCAPD3-213	ENST00000534532	PRPF40B	Q6NWY9	871 aa	Known RBP	18.42	■□□□□ 0.54
NCAPD3-213	ENST00000534532	SET	Q01105	290 aa	Predicted RBP	18.42	■□□□□ 0.54
NCAPD3-213	ENST00000534532	SLC12A7	Q9Y666	1083 aa		18.42	■□□□□ 0.54
NCAPD3-213	ENST00000534532	PI4KAP2	A4QPH2	592 aa		18.42	■□□□□ 0.54
NCAPD3-213	ENST00000534532	PI4KAP1	Q8N8J0	262 aa		18.42	■□□□□ 0.54
NCAPD3-213	ENST00000534532	TFCP2L1	Q9NZI6	479 aa		18.42	■□□□□ 0.54
NCAPD3-213	ENST00000534532	PDE4B	Q07343	736 aa		18.41	■□□□□ 0.54
NCAPD3-213	ENST00000534532	OGFOD1	Q8N543	542 aa		18.41	■□□□□ 0.54
NCAPD3-213	ENST00000534532	TRAK2	O60296	914 aa		18.41	■□□□□ 0.54
NCAPD3-213	ENST00000534532	CATIP	Q7Z7H3	387 aa		18.41	■□□□□ 0.54
NCAPD3-213	ENST00000534532	DDX11	Q96FC9	970 aa		18.41	■□□□□ 0.54
NCAPD3-213	ENST00000534532	HSP90B2P	Q58FF3	399 aa		18.4	■□□□□ 0.54
NCAPD3-213	ENST00000534532	SMARCA5	O60264	1052 aa	Predicted RBP	18.4	■□□□□ 0.54
NCAPD3-213	ENST00000534532	NOM1	Q5C9Z4	860 aa	Known RBP	18.4	■□□□□ 0.54
NCAPD3-213	ENST00000534532	PHAX	Q9H814	394 aa	Known RBP	18.4	■□□□□ 0.54
NCAPD3-213	ENST00000534532	AKAP4	Q5JQC9	854 aa		18.4	■□□□□ 0.54
NCAPD3-213	ENST00000534532	NYX	Q9GZU5	481 aa		18.4	■□□□□ 0.54
NCAPD3-213	ENST00000534532	MRE11	P49959	708 aa		18.4	■□□□□ 0.54
NCAPD3-213	ENST00000534532	DUOX2	Q9NRD8	1548 aa		18.4	■□□□□ 0.54
NCAPD3-213	ENST00000534532	IFIT3	O14879	490 aa	Known RBP	18.39	■□□□□ 0.54
NCAPD3-213	ENST00000534532	MPHOSPH6	Q99547	160 aa	Known RBP	18.39	■□□□□ 0.54
NCAPD3-213	ENST00000534532	RTCB	Q9Y3I0	505 aa	Known RBP	18.39	■□□□□ 0.54
NCAPD3-213	ENST00000534532	TEX35	Q5T0J7	233 aa		18.39	■□□□□ 0.53
NCAPD3-213	ENST00000534532	ECHDC1	Q9NTX5	307 aa		18.39	■□□□□ 0.53
NCAPD3-213	ENST00000534532	PARP3	Q9Y6F1	533 aa		18.39	■□□□□ 0.53
NCAPD3-213	ENST00000534532	PPIP5K1	Q6PFW1	1433 aa		18.39	■□□□□ 0.53
NCAPD3-213	ENST00000534532	TMEM266	Q2M3C6	531 aa		18.39	■□□□□ 0.53
NCAPD3-213	ENST00000534532	ZGPAT	Q8N5A5	531 aa	Known RBP	18.39	■□□□□ 0.53
NCAPD3-213	ENST00000534532	CBFA2T2	O43439	604 aa		18.39	■□□□□ 0.53
NCAPD3-213	ENST00000534532	CLEC11A	Q9Y240	323 aa		18.39	■□□□□ 0.53
NCAPD3-213	ENST00000534532	CCDC12	Q8WUD4	166 aa	Predicted RBP	18.38	■□□□□ 0.53
NCAPD3-213	ENST00000534532	ERCC4	Q92889	916 aa	Predicted RBP	18.38	■□□□□ 0.53
NCAPD3-213	ENST00000534532	POTEJ	P0CG39	1038 aa		18.38	■□□□□ 0.53
NCAPD3-213	ENST00000534532	CABLES1	Q8TDN4	633 aa		18.38	■□□□□ 0.53
NCAPD3-213	ENST00000534532	EVI5L	Q96CN4	794 aa		18.38	■□□□□ 0.53
NCAPD3-213	ENST00000534532	TPTE2	Q6XPS3	522 aa		18.38	■□□□□ 0.53
NCAPD3-213	ENST00000534532	ABCC10	Q5T3U5	1492 aa		18.38	■□□□□ 0.53
NCAPD3-213	ENST00000534532	KIF5B	P33176	963 aa		18.38	■□□□□ 0.53
NCAPD3-213	ENST00000534532	TMEM87A	Q8NBN3	555 aa		18.38	■□□□□ 0.53
NCAPD3-213	ENST00000534532	NIP7	Q9Y221	180 aa	Known RBP eCLIP	18.38	■□□□□ 0.53
NCAPD3-213	ENST00000534532	CCDC194	A0A1B0GVG4	234 aa		18.37	■□□□□ 0.53
NCAPD3-213	ENST00000534532	CRNKL1	Q9BZJ0	848 aa	Known RBP	18.37	■□□□□ 0.53
NCAPD3-213	ENST00000534532	SEPT11	Q9NVA2	429 aa	Known RBP	18.37	■□□□□ 0.53
NCAPD3-213	ENST00000534532	NFKBIB	Q15653	356 aa		18.37	■□□□□ 0.53
NCAPD3-213	ENST00000534532	WDR97	A6NE52	1622 aa		18.37	■□□□□ 0.53
NCAPD3-213	ENST00000534532	GOLIM4	O00461	696 aa		18.37	■□□□□ 0.53
NCAPD3-213	ENST00000534532	NEBL	O76041	1014 aa		18.37	■□□□□ 0.53
NCAPD3-213	ENST00000534532	MBIP	Q9NS73	344 aa		18.37	■□□□□ 0.53
NCAPD3-213	ENST00000534532	TSPY2	A6NKD2	308 aa		18.36	■□□□□ 0.53
NCAPD3-213	ENST00000534532	PDZRN4	Q6ZMN7	1036 aa	Predicted RBP	18.36	■□□□□ 0.53
NCAPD3-213	ENST00000534532	PEG3	Q9GZU2	1588 aa		18.36	■□□□□ 0.53
NCAPD3-213	ENST00000534532	CCDC184	Q52MB2	194 aa		18.36	■□□□□ 0.53
NCAPD3-213	ENST00000534532	NF2	P35240	595 aa		18.36	■□□□□ 0.53
NCAPD3-213	ENST00000534532	IL16	Q14005	1332 aa		18.36	■□□□□ 0.53
NCAPD3-213	ENST00000534532	RAPGEF6	Q8TEU7	1601 aa		18.36	■□□□□ 0.53
NCAPD3-213	ENST00000534532	THOC2	Q8NI27	1593 aa	Known RBP	18.36	■□□□□ 0.53
NCAPD3-213	ENST00000534532	NKTR	P30414	1462 aa	Known RBP	18.36	■□□□□ 0.53
NCAPD3-213	ENST00000534532	ERLIN2	O94905	339 aa		18.36	■□□□□ 0.53

Retrieved 100 of 20,778 RNA–protein pairs in 70.7 ms