RNA–Protein interactions for RNA: ENST00000529637.5

USP48-213, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 3,228 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-213ENST00000529637 ARHGEF10O15013 1369 aa17.16■□□□□ 0.34
USP48-213ENST00000529637 SIPA1L2Q9P2F8 1722 aaPredicted RBP17.16■□□□□ 0.34
USP48-213ENST00000529637 AKAP12Q02952 1782 aa17.16■□□□□ 0.34
USP48-213ENST00000529637 PDE1AP54750 535 aa17.15■□□□□ 0.34
USP48-213ENST00000529637 PALD1Q9ULE6 856 aa17.15■□□□□ 0.34
USP48-213ENST00000529637 ERC2O15083 957 aa17.15■□□□□ 0.34
USP48-213ENST00000529637 USP31Q70CQ4 1352 aa17.15■□□□□ 0.34
USP48-213ENST00000529637 ADCY5O95622 1261 aa17.14■□□□□ 0.33
USP48-213ENST00000529637 BCL2L12Q9HB09 334 aa17.14■□□□□ 0.33
USP48-213ENST00000529637 GNAI3P08754 354 aa17.14■□□□□ 0.33
USP48-213ENST00000529637 KCNA6P17658 529 aa17.14■□□□□ 0.33
USP48-213ENST00000529637 USP48Q86UV5 1035 aa17.14■□□□□ 0.33
USP48-213ENST00000529637 THEMISQ8N1K5 641 aaPredicted RBP17.14■□□□□ 0.33
USP48-213ENST00000529637 LRRCC1Q9C099 1032 aa17.14■□□□□ 0.33
USP48-213ENST00000529637 PRIMPOLQ96LW4 560 aa17.13■□□□□ 0.33
USP48-213ENST00000529637 TBX22Q9Y458 520 aa17.13■□□□□ 0.33
USP48-213ENST00000529637 LRRFIP2Q9Y608 721 aaKnown RBP17.13■□□□□ 0.33
USP48-213ENST00000529637 PNMA6EA0A0J9YXQ4 647 aa17.13■□□□□ 0.33
USP48-213ENST00000529637 HOXC9P31274 260 aa17.13■□□□□ 0.33
USP48-213ENST00000529637 GTF2F1P35269 517 aaKnown RBP eCLIP17.13■□□□□ 0.33
USP48-213ENST00000529637 HDGFL1Q5TGJ6 251 aa17.13■□□□□ 0.33
USP48-213ENST00000529637 ANO2Q9NQ90 1003 aa17.13■□□□□ 0.33
USP48-213ENST00000529637 IGSF1Q8N6C5 1336 aa17.13■□□□□ 0.33
USP48-213ENST00000529637 HMGN5P82970 282 aaKnown RBP17.13■□□□□ 0.33
USP48-213ENST00000529637 IL1RAPL2Q9NP60 686 aa17.13■□□□□ 0.33
USP48-213ENST00000529637 KIF3AQ9Y496 699 aa17.13■□□□□ 0.33
USP48-213ENST00000529637 HCLS1P14317 486 aaPredicted RBP17.12■□□□□ 0.33
USP48-213ENST00000529637 LMOD2Q6P5Q4 547 aa17.12■□□□□ 0.33
USP48-213ENST00000529637 PEAK1Q9H792 1746 aa17.12■□□□□ 0.33
USP48-213ENST00000529637 PLCB2Q00722 1185 aa17.11■□□□□ 0.33
USP48-213ENST00000529637 UBR1Q8IWV7 1749 aa17.11■□□□□ 0.33
USP48-213ENST00000529637 UBTFL1P0CB47 393 aaPredicted RBP17.11■□□□□ 0.33
USP48-213ENST00000529637 IL17REQ8NFR9 667 aa17.11■□□□□ 0.33
USP48-213ENST00000529637 MX1P20591 662 aa17.11■□□□□ 0.33
USP48-213ENST00000529637 TAF7Q15545 349 aaPredicted RBP17.11■□□□□ 0.33
USP48-213ENST00000529637 UPF3BQ9BZI7 483 aaKnown RBP17.11■□□□□ 0.33
USP48-213ENST00000529637 RIMS1Q86UR5 1692 aaKnown RBP17.11■□□□□ 0.33
USP48-213ENST00000529637 TCHHQ07283 1943 aa17.1■□□□□ 0.33
USP48-213ENST00000529637 DTNBO60941 627 aa17.1■□□□□ 0.33
USP48-213ENST00000529637 U2AF2P26368 475 aaKnown RBP eCLIP17.1■□□□□ 0.332e-6■■□□□ 13.2
USP48-213ENST00000529637 NRKQ7Z2Y5 1582 aa17.1■□□□□ 0.33
USP48-213ENST00000529637 CEP170BQ9Y4F5 1589 aaPredicted RBP17.09■□□□□ 0.33
USP48-213ENST00000529637 AP5Z1O43299 807 aa17.09■□□□□ 0.33
USP48-213ENST00000529637 MAP4K4O95819 1239 aaPredicted RBP17.09■□□□□ 0.33
USP48-213ENST00000529637 CUL4AQ13619 759 aa17.09■□□□□ 0.33
USP48-213ENST00000529637 PHAXQ9H814 394 aaKnown RBP17.09■□□□□ 0.33
USP48-213ENST00000529637 MCCP23508 829 aa17.08■□□□□ 0.33
USP48-213ENST00000529637 SYAP1Q96A49 352 aaPredicted RBP17.08■□□□□ 0.33
USP48-213ENST00000529637 PYCARDQ9ULZ3 195 aa17.08■□□□□ 0.33
USP48-213ENST00000529637 NUTM1Q86Y26 1132 aa17.08■□□□□ 0.32
USP48-213ENST00000529637 SPTLC3Q9NUV7 552 aa17.08■□□□□ 0.32
USP48-213ENST00000529637 SURF6O75683 361 aaKnown RBP17.08■□□□□ 0.32
USP48-213ENST00000529637 RIOK3O14730 519 aaKnown RBP17.07■□□□□ 0.32
USP48-213ENST00000529637 ANXA1P04083 346 aa17.07■□□□□ 0.32
USP48-213ENST00000529637 PDCL2Q8N4E4 241 aa17.07■□□□□ 0.32
USP48-213ENST00000529637 KDRP35968 1356 aa17.07■□□□□ 0.32
USP48-213ENST00000529637 ATP8B2P98198 1209 aa17.07■□□□□ 0.32
USP48-213ENST00000529637 GTPBP4Q9BZE4 634 aaKnown RBP17.07■□□□□ 0.32
USP48-213ENST00000529637 KCNF1Q9H3M0 494 aa17.07■□□□□ 0.32
USP48-213ENST00000529637 CNPY2Q9Y2B0 182 aa17.07■□□□□ 0.32
USP48-213ENST00000529637 MAP3K5Q99683 1374 aa17.07■□□□□ 0.32
USP48-213ENST00000529637 SSH2Q76I76 1423 aa17.06■□□□□ 0.32
USP48-213ENST00000529637 SETD1BQ9UPS6 1966 aaKnown RBP17.06■□□□□ 0.32
USP48-213ENST00000529637 HTATSF1O43719 755 aaKnown RBP17.06■□□□□ 0.32
USP48-213ENST00000529637 OS9Q13438 667 aaPredicted RBP17.06■□□□□ 0.32
USP48-213ENST00000529637 LARP6Q9BRS8 491 aaKnown RBP17.06■□□□□ 0.32
USP48-213ENST00000529637 PSME1Q06323 249 aa17.05■□□□□ 0.32
USP48-213ENST00000529637 ESYT1Q9BSJ8 1104 aa17.05■□□□□ 0.32
USP48-213ENST00000529637 SRCIN1Q9C0H9 1055 aa17.05■□□□□ 0.32
USP48-213ENST00000529637 TEFQ10587 303 aa17.05■□□□□ 0.32
USP48-213ENST00000529637 SPC24Q8NBT2 197 aa17.05■□□□□ 0.32
USP48-213ENST00000529637 PHF8Q9UPP1 1060 aa17.05■□□□□ 0.32
USP48-213ENST00000529637 ESCO1Q5FWF5 840 aa17.04■□□□□ 0.32
USP48-213ENST00000529637 USP44Q9H0E7 712 aa17.04■□□□□ 0.32
USP48-213ENST00000529637 PHF14O94880 888 aa17.04■□□□□ 0.32
USP48-213ENST00000529637 FGD1P98174 961 aa17.04■□□□□ 0.32
USP48-213ENST00000529637 UVSSAQ2YD98 709 aa17.04■□□□□ 0.32
USP48-213ENST00000529637 LGR6Q9HBX8 967 aa17.04■□□□□ 0.32
USP48-213ENST00000529637 SRGAP3O43295 1099 aa17.04■□□□□ 0.32
USP48-213ENST00000529637 KDM4AO75164 1064 aa17.04■□□□□ 0.32
USP48-213ENST00000529637 GIMAP6Q6P9H5 292 aa17.04■□□□□ 0.32
USP48-213ENST00000529637 PPP1R42Q7Z4L9 355 aa17.04■□□□□ 0.32
USP48-213ENST00000529637 FAM184AQ8NB25 1140 aa17.04■□□□□ 0.32
USP48-213ENST00000529637 KIAA1524Q8TCG1 905 aa17.03■□□□□ 0.32
USP48-213ENST00000529637 IL25Q9H293 177 aa17.03■□□□□ 0.32
USP48-213ENST00000529637 OSBPL3Q9H4L5 887 aa17.03■□□□□ 0.32
USP48-213ENST00000529637 UNC5CLQ8IV45 518 aa17.03■□□□□ 0.32
USP48-213ENST00000529637 INTS4Q96HW7 963 aaKnown RBP17.02■□□□□ 0.32
USP48-213ENST00000529637 DIP2AQ14689 1571 aa17.02■□□□□ 0.32
USP48-213ENST00000529637 KIF20AO95235 890 aa17.02■□□□□ 0.32
USP48-213ENST00000529637 CHMLP26374 656 aa17.02■□□□□ 0.32
USP48-213ENST00000529637 CCDC183Q5T5S1 534 aa17.02■□□□□ 0.32
USP48-213ENST00000529637 MPRIPQ6WCQ1 1025 aa17.02■□□□□ 0.32
USP48-213ENST00000529637 LRRC59Q96AG4 307 aaKnown RBP17.02■□□□□ 0.32
USP48-213ENST00000529637 CHPF2Q9P2E5 772 aa17.02■□□□□ 0.32
USP48-213ENST00000529637 RGPD8O14715 1765 aaPredicted RBP17.02■□□□□ 0.31
USP48-213ENST00000529637 ZNF530Q6P9A1 599 aaPredicted RBP17.02■□□□□ 0.31
USP48-213ENST00000529637 KIF13AQ9H1H9 1805 aa17.01■□□□□ 0.31
USP48-213ENST00000529637 PI4KAP2A4QPH2 592 aa17.01■□□□□ 0.31
USP48-213ENST00000529637 NBPF6Q5VWK0 638 aa17.01■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 60 ms