RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 HYPKQ9NX55 129 aa26.63■■□□□ 1.85
VPS28-208ENST00000527797 ASAP1Q9ULH1 1129 aa26.63■■□□□ 1.85
VPS28-208ENST00000527797 KCPQ6ZWJ8 1503 aa26.63■■□□□ 1.85
VPS28-208ENST00000527797 GLI3P10071 1580 aa26.62■■□□□ 1.85
VPS28-208ENST00000527797 ONECUT3O60422 494 aaPredicted RBP26.61■■□□□ 1.85
VPS28-208ENST00000527797 ANXA1P04083 346 aa26.61■■□□□ 1.85
VPS28-208ENST00000527797 F6X3S4 739 aa26.6■■□□□ 1.85
VPS28-208ENST00000527797 ZBTB7BO15156 539 aaPredicted RBP26.6■■□□□ 1.85
VPS28-208ENST00000527797 PROSER3Q2NL68 480 aa26.6■■□□□ 1.85
VPS28-208ENST00000527797 ACSBG1Q96GR2 724 aa26.6■■□□□ 1.85
VPS28-208ENST00000527797 ZBTB40Q9NUA8 1239 aa26.6■■□□□ 1.85
VPS28-208ENST00000527797 CACNA1FO60840 1977 aa26.6■■□□□ 1.85
VPS28-208ENST00000527797 UBR2Q8IWV8 1755 aa26.6■■□□□ 1.85
VPS28-208ENST00000527797 THSD7AQ9UPZ6 1657 aa26.6■■□□□ 1.85
VPS28-208ENST00000527797 CCT4P50991 539 aaKnown RBP26.59■■□□□ 1.85
VPS28-208ENST00000527797 PDIA6Q15084 440 aa26.59■■□□□ 1.85
VPS28-208ENST00000527797 SLC4A10Q6U841 1118 aa26.59■■□□□ 1.85
VPS28-208ENST00000527797 VSIG10Q8N0Z9 540 aa26.59■■□□□ 1.85
VPS28-208ENST00000527797 C5P01031 1676 aa26.59■■□□□ 1.85
VPS28-208ENST00000527797 ITGB4P16144 1822 aa26.58■■□□□ 1.85
VPS28-208ENST00000527797 PELP1Q8IZL8 1130 aaKnown RBP26.57■■□□□ 1.84
VPS28-208ENST00000527797 FBXO41Q8TF61 875 aa26.57■■□□□ 1.84
VPS28-208ENST00000527797 TEX13AQ9BXU3 409 aaPredicted RBP26.57■■□□□ 1.84
VPS28-208ENST00000527797 DOT1LQ8TEK3 1739 aa26.57■■□□□ 1.84
VPS28-208ENST00000527797 ERBB4Q15303 1308 aa26.57■■□□□ 1.84
VPS28-208ENST00000527797 RBM42Q9BTD8 480 aaKnown RBP26.57■■□□□ 1.84
VPS28-208ENST00000527797 PCDHB15Q9Y5E8 787 aa26.56■■□□□ 1.84
VPS28-208ENST00000527797 SEPT12Q8IYM1 358 aa26.55■■□□□ 1.84
VPS28-208ENST00000527797 MYL6BP14649 208 aa26.54■■□□□ 1.84
VPS28-208ENST00000527797 ZNF772Q68DY9 489 aaPredicted RBP26.54■■□□□ 1.84
VPS28-208ENST00000527797 DDX58O95786 925 aaKnown RBP26.54■■□□□ 1.84
VPS28-208ENST00000527797 CENPQQ7L2Z9 268 aaPredicted RBP26.54■■□□□ 1.84
VPS28-208ENST00000527797 PI4KAP2A4QPH2 592 aa26.53■■□□□ 1.84
VPS28-208ENST00000527797 PI4KAP1Q8N8J0 262 aa26.53■■□□□ 1.84
VPS28-208ENST00000527797 DNAAF4Q8WXU2 420 aa26.53■■□□□ 1.84
VPS28-208ENST00000527797 PXDNLA1KZ92 1463 aa26.53■■□□□ 1.84
VPS28-208ENST00000527797 KDM2BQ8NHM5 1336 aa26.52■■□□□ 1.84
VPS28-208ENST00000527797 KSR2Q6VAB6 950 aa26.52■■□□□ 1.84
VPS28-208ENST00000527797 LAMB4A4D0S4 1761 aa26.52■■□□□ 1.84
VPS28-208ENST00000527797 AIMP1Q12904 312 aaKnown RBP26.5■■□□□ 1.83
VPS28-208ENST00000527797 DNAJC10Q8IXB1 793 aa26.5■■□□□ 1.83
VPS28-208ENST00000527797 RWDD1Q9H446 243 aaPredicted RBP26.5■■□□□ 1.83
VPS28-208ENST00000527797 ADCY9O60503 1353 aa26.5■■□□□ 1.83
VPS28-208ENST00000527797 KCNQ2O43526 872 aa26.5■■□□□ 1.83
VPS28-208ENST00000527797 IGHDP01880 384 aa26.5■■□□□ 1.83
VPS28-208ENST00000527797 COPS6Q7L5N1 327 aa26.5■■□□□ 1.83
VPS28-208ENST00000527797 LRP10Q7Z4F1 713 aa26.5■■□□□ 1.83
VPS28-208ENST00000527797 XAGE3Q8WTP9 111 aa26.5■■□□□ 1.83
VPS28-208ENST00000527797 SMARCC1Q92922 1105 aaPredicted RBP26.5■■□□□ 1.83
VPS28-208ENST00000527797 STARD3NLO95772 234 aa26.49■■□□□ 1.83
VPS28-208ENST00000527797 PIP4K2AP48426 406 aaPredicted RBP26.49■■□□□ 1.83
VPS28-208ENST00000527797 A1BGP04217 495 aa26.48■■□□□ 1.83
VPS28-208ENST00000527797 SRCIN1Q9C0H9 1055 aa26.48■■□□□ 1.83
VPS28-208ENST00000527797 MAP3K2Q9Y2U5 619 aa26.48■■□□□ 1.83
VPS28-208ENST00000527797 NBPF26B4DH59 902 aa26.47■■□□□ 1.83
VPS28-208ENST00000527797 NBPF14Q5TI25 921 aa26.47■■□□□ 1.83
VPS28-208ENST00000527797 NBPF10Q6P3W6 841 aaKnown RBP26.47■■□□□ 1.83
VPS28-208ENST00000527797 NBPF15Q8N660 670 aa26.47■■□□□ 1.83
VPS28-208ENST00000527797 SLC4A9Q96Q91 983 aa26.47■■□□□ 1.83
VPS28-208ENST00000527797 BEND3Q5T5X7 828 aa26.46■■□□□ 1.83
VPS28-208ENST00000527797 RIC3Q7Z5B4 369 aa26.46■■□□□ 1.83
VPS28-208ENST00000527797 MEIS3Q99687 375 aa26.46■■□□□ 1.83
VPS28-208ENST00000527797 RBM6P78332 1123 aaKnown RBP26.45■■□□□ 1.82
VPS28-208ENST00000527797 KAT6BQ8WYB5 2073 aa26.45■■□□□ 1.82
VPS28-208ENST00000527797 ATP10DQ9P241 1426 aa26.45■■□□□ 1.82
VPS28-208ENST00000527797 HDAC1Q13547 482 aaPredicted RBP26.44■■□□□ 1.82
VPS28-208ENST00000527797 FAM182BQ5T319 152 aa26.44■■□□□ 1.82
VPS28-208ENST00000527797 ANKRD13DQ6ZTN6 518 aa26.44■■□□□ 1.82
VPS28-208ENST00000527797 C1orf115Q9H7X2 142 aa26.44■■□□□ 1.82
VPS28-208ENST00000527797 PALLDQ8WX93 1383 aa26.44■■□□□ 1.82
VPS28-208ENST00000527797 GNAI3P08754 354 aa26.43■■□□□ 1.82
VPS28-208ENST00000527797 LOC102724428A0A0B4J2F2 783 aa26.43■■□□□ 1.82
VPS28-208ENST00000527797 CYP19A1P11511 503 aaPredicted RBP26.43■■□□□ 1.82
VPS28-208ENST00000527797 SIK1P57059 783 aa26.43■■□□□ 1.82
VPS28-208ENST00000527797 ALDH1L1O75891 902 aa26.42■■□□□ 1.82
VPS28-208ENST00000527797 ATP6V1AP38606 617 aa26.41■■□□□ 1.82
VPS28-208ENST00000527797 LINS1Q8NG48 757 aa26.4■■□□□ 1.82
VPS28-208ENST00000527797 PLBD2Q8NHP8 589 aa26.4■■□□□ 1.82
VPS28-208ENST00000527797 NEXNQ0ZGT2 675 aa26.39■■□□□ 1.82
VPS28-208ENST00000527797 KRT27Q7Z3Y8 459 aa26.39■■□□□ 1.82
VPS28-208ENST00000527797 USP44Q9H0E7 712 aa26.39■■□□□ 1.82
VPS28-208ENST00000527797 METTL22Q9BUU2 404 aaPredicted RBP26.39■■□□□ 1.81
VPS28-208ENST00000527797 GNAI2P04899 355 aa26.38■■□□□ 1.81
VPS28-208ENST00000527797 RPAP2Q8IXW5 612 aaPredicted RBP26.38■■□□□ 1.81
VPS28-208ENST00000527797 N4BP2Q86UW6 1770 aaPredicted RBP26.38■■□□□ 1.81
VPS28-208ENST00000527797 PTF1AQ7RTS3 328 aa26.37■■□□□ 1.81
VPS28-208ENST00000527797 UBTFL1P0CB47 393 aaPredicted RBP26.36■■□□□ 1.81
VPS28-208ENST00000527797 FAM196AQ6ZSG2 479 aa26.36■■□□□ 1.81
VPS28-208ENST00000527797 TTLL7Q6ZT98 887 aa26.36■■□□□ 1.81
VPS28-208ENST00000527797 ANKRD44Q8N8A2 993 aa26.36■■□□□ 1.81
VPS28-208ENST00000527797 MYD88Q99836 296 aa26.36■■□□□ 1.81
VPS28-208ENST00000527797 NHSQ6T4R5 1651 aa26.35■■□□□ 1.81
VPS28-208ENST00000527797 RXRBP28702 533 aa26.35■■□□□ 1.81
VPS28-208ENST00000527797 ZNF330Q9Y3S2 320 aaPredicted RBP26.35■■□□□ 1.81
VPS28-208ENST00000527797 TJP1Q07157 1748 aa26.34■■□□□ 1.81
VPS28-208ENST00000527797 CWF19L2Q2TBE0 894 aaKnown RBP26.34■■□□□ 1.81
VPS28-208ENST00000527797 CEP85Q6P2H3 762 aa26.34■■□□□ 1.81
VPS28-208ENST00000527797 ILDR1Q86SU0 546 aaPredicted RBP26.34■■□□□ 1.81
VPS28-208ENST00000527797 SIRT2Q8IXJ6 389 aa26.34■■□□□ 1.81
VPS28-208ENST00000527797 ZBTB1Q9Y2K1 713 aa26.34■■□□□ 1.81
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms