RNA–Protein interactions for RNA: ENST00000523088.5

HDAC3-216, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-216ENST00000523088 CCDC7Q96M83 1385 aa9.36□□□□□ -0.91
HDAC3-216ENST00000523088 VGLL3A8MV65 326 aa9.35□□□□□ -0.91
HDAC3-216ENST00000523088 CCER2I3L3R5 266 aa9.35□□□□□ -0.91
HDAC3-216ENST00000523088 CSPP1Q1MSJ5 1256 aa9.35□□□□□ -0.91
HDAC3-216ENST00000523088 LONRF3Q496Y0 759 aa9.35□□□□□ -0.91
HDAC3-216ENST00000523088 LARP1Q6PKG0 1096 aaKnown RBP9.35□□□□□ -0.91
HDAC3-216ENST00000523088 ARHGEF25Q86VW2 580 aa9.35□□□□□ -0.91
HDAC3-216ENST00000523088 CXorf38Q8TB03 319 aa9.35□□□□□ -0.91
HDAC3-216ENST00000523088 MRVI1Q9Y6F6 885 aa9.35□□□□□ -0.91
HDAC3-216ENST00000523088 SBF2Q86WG5 1849 aa9.35□□□□□ -0.91
HDAC3-216ENST00000523088 RREB1Q92766 1687 aa9.35□□□□□ -0.91
HDAC3-216ENST00000523088 CD163L1Q9NR16 1453 aa9.34□□□□□ -0.91
HDAC3-216ENST00000523088 ZC3H4Q9UPT8 1303 aaKnown RBP9.34□□□□□ -0.91
HDAC3-216ENST00000523088 BCL9O00512 1426 aa9.34□□□□□ -0.91
HDAC3-216ENST00000523088 TESPA1A2RU30 521 aaPredicted RBP9.34□□□□□ -0.91
HDAC3-216ENST00000523088 MARCH6O60337 910 aa9.34□□□□□ -0.91
HDAC3-216ENST00000523088 LMOD3Q0VAK6 560 aa9.34□□□□□ -0.91
HDAC3-216ENST00000523088 TOM1L2Q6ZVM7 507 aa9.34□□□□□ -0.91
HDAC3-216ENST00000523088 TMC1Q8TDI8 760 aa9.34□□□□□ -0.91
HDAC3-216ENST00000523088 PAIP2Q9BPZ3 127 aaKnown RBP9.34□□□□□ -0.91
HDAC3-216ENST00000523088 RBM27Q9P2N5 1060 aaKnown RBP9.34□□□□□ -0.91
HDAC3-216ENST00000523088 MAGEC2Q9UBF1 373 aaPredicted RBP9.34□□□□□ -0.91
HDAC3-216ENST00000523088 PEAK1Q9H792 1746 aa9.34□□□□□ -0.92
HDAC3-216ENST00000523088 TMF1P82094 1093 aa9.33□□□□□ -0.92
HDAC3-216ENST00000523088 DDX46Q7L014 1031 aaKnown RBP9.33□□□□□ -0.92
HDAC3-216ENST00000523088 DEFB132Q7Z7B7 95 aa9.33□□□□□ -0.92
HDAC3-216ENST00000523088 ITFG2Q969R8 447 aa9.33□□□□□ -0.92
HDAC3-216ENST00000523088 EFCC1Q9HA90 598 aa9.33□□□□□ -0.92
HDAC3-216ENST00000523088 A0A1W2PP64 1363 aa9.33□□□□□ -0.92
HDAC3-216ENST00000523088 ANKRD36BQ8N2N9 1353 aa9.33□□□□□ -0.92
HDAC3-216ENST00000523088 USP47Q96K76 1375 aa9.33□□□□□ -0.92
HDAC3-216ENST00000523088 CSB-PGBD3P0DP91 1061 aa9.32□□□□□ -0.92
HDAC3-216ENST00000523088 NEFHP12036 1026 aa9.32□□□□□ -0.92
HDAC3-216ENST00000523088 DDB1Q16531 1140 aa9.32□□□□□ -0.92
HDAC3-216ENST00000523088 UVSSAQ2YD98 709 aa9.32□□□□□ -0.92
HDAC3-216ENST00000523088 JADE2Q9NQC1 790 aa9.32□□□□□ -0.92
HDAC3-216ENST00000523088 KIF20BQ96Q89 1820 aa9.32□□□□□ -0.92
HDAC3-216ENST00000523088 SRCAPQ6ZRS2 3230 aa9.31□□□□□ -0.92
HDAC3-216ENST00000523088 TNS2Q63HR2 1409 aa9.31□□□□□ -0.92
HDAC3-216ENST00000523088 NUP188Q5SRE5 1749 aa9.31□□□□□ -0.92
HDAC3-216ENST00000523088 ST20-MTHFSA0A0A6YYL1 179 aa9.31□□□□□ -0.92
HDAC3-216ENST00000523088 SSFA2P28290 1259 aa9.31□□□□□ -0.92
HDAC3-216ENST00000523088 POLD1P28340 1107 aa9.31□□□□□ -0.92
HDAC3-216ENST00000523088 ZRSR2Q15696 482 aaKnown RBP9.31□□□□□ -0.92
HDAC3-216ENST00000523088 ZNF280DQ6N043 979 aa9.31□□□□□ -0.92
HDAC3-216ENST00000523088 TESK2Q96S53 571 aa9.31□□□□□ -0.92
HDAC3-216ENST00000523088 SUGT1Q9Y2Z0 365 aa9.31□□□□□ -0.92
HDAC3-216ENST00000523088 ERBB3P21860 1342 aa9.31□□□□□ -0.92
HDAC3-216ENST00000523088 RTL1A6NKG5 1358 aa9.3□□□□□ -0.92
HDAC3-216ENST00000523088 GOLGA6CA6NDK9 693 aa9.3□□□□□ -0.92
HDAC3-216ENST00000523088 GOLGA6BA6NDN3 693 aa9.3□□□□□ -0.92
HDAC3-216ENST00000523088 TRIM37O94972 964 aa9.3□□□□□ -0.92
HDAC3-216ENST00000523088 GOLGA6DP0CG33 693 aa9.3□□□□□ -0.92
HDAC3-216ENST00000523088 SCP2P22307 547 aa9.3□□□□□ -0.92
HDAC3-216ENST00000523088 NBPF3Q9H094 633 aa9.3□□□□□ -0.92
HDAC3-216ENST00000523088 GOLGA6AQ9NYA3 693 aa9.3□□□□□ -0.92
HDAC3-216ENST00000523088 CEP83Q9Y592 693 aa9.3□□□□□ -0.92
HDAC3-216ENST00000523088 RPS6KL1Q9Y6S9 549 aa9.3□□□□□ -0.92
HDAC3-216ENST00000523088 KIF24Q5T7B8 1368 aa9.29□□□□□ -0.92
HDAC3-216ENST00000523088 SMARCA5O60264 1052 aaPredicted RBP9.29□□□□□ -0.92
HDAC3-216ENST00000523088 APBA3O96018 575 aa9.29□□□□□ -0.92
HDAC3-216ENST00000523088 EN1Q05925 392 aaPredicted RBP9.29□□□□□ -0.92
HDAC3-216ENST00000523088 MAPK8IP2Q13387 824 aaPredicted RBP9.29□□□□□ -0.92
HDAC3-216ENST00000523088 NBPF14Q5TI25 921 aa9.29□□□□□ -0.92
HDAC3-216ENST00000523088 MORC4Q8TE76 937 aa9.29□□□□□ -0.92
HDAC3-216ENST00000523088 COG3Q96JB2 828 aa9.29□□□□□ -0.92
HDAC3-216ENST00000523088 SLC12A5Q9H2X9 1139 aa9.29□□□□□ -0.92
HDAC3-216ENST00000523088 FRMD4BQ9Y2L6 1034 aa9.29□□□□□ -0.92
HDAC3-216ENST00000523088 NHSQ6T4R5 1651 aa9.29□□□□□ -0.92
HDAC3-216ENST00000523088 KAT6BQ8WYB5 2073 aa9.28□□□□□ -0.92
HDAC3-216ENST00000523088 CDC37Q16543 378 aaPredicted RBP9.28□□□□□ -0.92
HDAC3-216ENST00000523088 NME9Q86XW9 330 aa9.28□□□□□ -0.92
HDAC3-216ENST00000523088 LSM14AQ8ND56 463 aaKnown RBP9.28□□□□□ -0.92
HDAC3-216ENST00000523088 IPO9Q96P70 1041 aaKnown RBP9.28□□□□□ -0.92
HDAC3-216ENST00000523088 CAMKK2Q96RR4 588 aa9.28□□□□□ -0.92
HDAC3-216ENST00000523088 FOXD4L1Q9NU39 408 aa9.28□□□□□ -0.92
HDAC3-216ENST00000523088 ANAPC4Q9UJX5 808 aa9.28□□□□□ -0.92
HDAC3-216ENST00000523088 AXIN2Q9Y2T1 843 aa9.28□□□□□ -0.92
HDAC3-216ENST00000523088 SMG6Q86US8 1419 aaKnown RBP9.28□□□□□ -0.92
HDAC3-216ENST00000523088 MYOM1P52179 1685 aa9.27□□□□□ -0.93
HDAC3-216ENST00000523088 PLSCR1O15162 318 aa9.27□□□□□ -0.93
HDAC3-216ENST00000523088 FAM182BQ5T319 152 aa9.27□□□□□ -0.93
HDAC3-216ENST00000523088 CCDC181Q5TID7 509 aa9.27□□□□□ -0.93
HDAC3-216ENST00000523088 NGEFQ8N5V2 710 aa9.27□□□□□ -0.93
HDAC3-216ENST00000523088 ZNF513Q8N8E2 541 aaPredicted RBP9.27□□□□□ -0.93
HDAC3-216ENST00000523088 SPINK5Q9NQ38 1064 aaPredicted RBP9.27□□□□□ -0.93
HDAC3-216ENST00000523088 SYNPO2Q9UMS6 1093 aa9.27□□□□□ -0.93
HDAC3-216ENST00000523088 KIF1CO43896 1103 aaKnown RBP9.26□□□□□ -0.93
HDAC3-216ENST00000523088 IL2RBP14784 551 aa9.26□□□□□ -0.93
HDAC3-216ENST00000523088 FOXD4Q12950 439 aaPredicted RBP9.26□□□□□ -0.93
HDAC3-216ENST00000523088 EZH2Q15910 746 aaKnown RBP9.26□□□□□ -0.93
HDAC3-216ENST00000523088 CCDC82Q8N4S0 544 aa9.26□□□□□ -0.93
HDAC3-216ENST00000523088 IP6K1Q92551 441 aa9.26□□□□□ -0.93
HDAC3-216ENST00000523088 CCDC85AQ96PX6 553 aaPredicted RBP9.26□□□□□ -0.93
HDAC3-216ENST00000523088 ZBTB47Q9UFB7 747 aaPredicted RBP9.26□□□□□ -0.93
HDAC3-216ENST00000523088 ABCF2Q9UG63 623 aa9.26□□□□□ -0.93
HDAC3-216ENST00000523088 DHX16O60231 1041 aaKnown RBP9.25□□□□□ -0.93
HDAC3-216ENST00000523088 HMGB2P26583 209 aaKnown RBP9.25□□□□□ -0.93
HDAC3-216ENST00000523088 PEX19P40855 299 aa9.25□□□□□ -0.93
HDAC3-216ENST00000523088 RNF217Q8TC41 542 aa9.25□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 85.8 ms