RNA–Protein interactions for RNA: ENST00000515516.1

TCOF1-215, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 5

Gene TCOF1, Length 661 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-215ENST00000515516 MCM10Q7L590 875 aa18.15■□□□□ 0.5
TCOF1-215ENST00000515516 BCS1LQ9Y276 419 aa18.15■□□□□ 0.5
TCOF1-215ENST00000515516 C10orf71Q711Q0 1435 aa18.15■□□□□ 0.5
TCOF1-215ENST00000515516 DPEP1P16444 411 aa18.14■□□□□ 0.49
TCOF1-215ENST00000515516 TM4SF1P30408 202 aa18.14■□□□□ 0.49
TCOF1-215ENST00000515516 ZNF330Q9Y3S2 320 aaPredicted RBP18.14■□□□□ 0.49
TCOF1-215ENST00000515516 ADAMTS7Q9UKP4 1686 aa18.14■□□□□ 0.49
TCOF1-215ENST00000515516 TJP1Q07157 1748 aa18.14■□□□□ 0.49
TCOF1-215ENST00000515516 DDR1Q08345 913 aa18.13■□□□□ 0.49
TCOF1-215ENST00000515516 RALBP1Q15311 655 aa18.13■□□□□ 0.49
TCOF1-215ENST00000515516 PXDNLA1KZ92 1463 aa18.13■□□□□ 0.49
TCOF1-215ENST00000515516 POLRMTO00411 1230 aaKnown RBP18.12■□□□□ 0.49
TCOF1-215ENST00000515516 GIGYF1O75420 1035 aaPredicted RBP18.12■□□□□ 0.49
TCOF1-215ENST00000515516 PIM2Q9P1W9 311 aa18.12■□□□□ 0.49
TCOF1-215ENST00000515516 KCNQ3O43525 872 aa18.11■□□□□ 0.49
TCOF1-215ENST00000515516 EIF5P55010 431 aaKnown RBP18.11■□□□□ 0.49
TCOF1-215ENST00000515516 DDX10Q13206 875 aaKnown RBP18.11■□□□□ 0.49
TCOF1-215ENST00000515516 DCTN1Q14203 1278 aa18.11■□□□□ 0.49
TCOF1-215ENST00000515516 NFIXQ14938 502 aa18.11■□□□□ 0.49
TCOF1-215ENST00000515516 CHD4Q14839 1912 aa18.11■□□□□ 0.49
TCOF1-215ENST00000515516 MYH14Q7Z406 1995 aaKnown RBP18.11■□□□□ 0.49
TCOF1-215ENST00000515516 C4AP0C0L4 1744 aa18.1■□□□□ 0.49
TCOF1-215ENST00000515516 MAPK8IP3Q9UPT6 1336 aa18.1■□□□□ 0.49
TCOF1-215ENST00000515516 IL6STP40189 918 aaPredicted RBP18.1■□□□□ 0.49
TCOF1-215ENST00000515516 TAF7Q15545 349 aaPredicted RBP18.1■□□□□ 0.49
TCOF1-215ENST00000515516 ARHGAP27Q6ZUM4 889 aa18.1■□□□□ 0.49
TCOF1-215ENST00000515516 A1BGP04217 495 aa18.09■□□□□ 0.49
TCOF1-215ENST00000515516 SNRPA1P09661 255 aaKnown RBP18.09■□□□□ 0.49
TCOF1-215ENST00000515516 DALRD3Q5D0E6 543 aaKnown RBP18.09■□□□□ 0.49
TCOF1-215ENST00000515516 SERPINB2P05120 415 aa18.08■□□□□ 0.48
TCOF1-215ENST00000515516 C1QTNF8P60827 252 aa18.08■□□□□ 0.48
TCOF1-215ENST00000515516 BICDL1Q6ZP65 573 aa18.08■□□□□ 0.48
TCOF1-215ENST00000515516 BCL2L12Q9HB09 334 aa18.08■□□□□ 0.48
TCOF1-215ENST00000515516 NFE2L2Q16236 605 aa18.07■□□□□ 0.48
TCOF1-215ENST00000515516 PNISRQ8TF01 805 aaKnown RBP18.07■□□□□ 0.48
TCOF1-215ENST00000515516 GPBP1L1Q9HC44 474 aaPredicted RBP18.07■□□□□ 0.48
TCOF1-215ENST00000515516 TBC1D2BQ9UPU7 963 aa18.07■□□□□ 0.48
TCOF1-215ENST00000515516 ATP10DQ9P241 1426 aa18.06■□□□□ 0.48
TCOF1-215ENST00000515516 KCNA3P22001 575 aa18.06■□□□□ 0.48
TCOF1-215ENST00000515516 CHRNA5P30532 468 aa18.06■□□□□ 0.48
TCOF1-215ENST00000515516 PLEKHF1Q96S99 279 aa18.06■□□□□ 0.48
TCOF1-215ENST00000515516 USP16Q9Y5T5 823 aa18.06■□□□□ 0.48
TCOF1-215ENST00000515516 NPHP1O15259 732 aa18.05■□□□□ 0.48
TCOF1-215ENST00000515516 ZNF526Q8TF50 670 aaPredicted RBP18.05■□□□□ 0.48
TCOF1-215ENST00000515516 TBC1D9BQ66K14 1250 aa18.04■□□□□ 0.48
TCOF1-215ENST00000515516 DZIP3Q86Y13 1208 aaKnown RBP18.04■□□□□ 0.48
TCOF1-215ENST00000515516 SETDB2Q96T68 719 aa18.04■□□□□ 0.48
TCOF1-215ENST00000515516 MIS18AQ9NYP9 233 aa18.04■□□□□ 0.48
TCOF1-215ENST00000515516 GOLGB1Q14789 3259 aaKnown RBP18.04■□□□□ 0.48
TCOF1-215ENST00000515516 UBR2Q8IWV8 1755 aa18.04■□□□□ 0.48
TCOF1-215ENST00000515516 MYBBP1AQ9BQG0 1328 aaKnown RBP18.02■□□□□ 0.48
TCOF1-215ENST00000515516 PRAMEF22A3QJZ6 481 aa18.02■□□□□ 0.48
TCOF1-215ENST00000515516 H0YIN7 160 aa18.02■□□□□ 0.48
TCOF1-215ENST00000515516 C2CD5Q86YS7 1000 aa18.02■□□□□ 0.48
TCOF1-215ENST00000515516 ZNF652Q9Y2D9 606 aa18.02■□□□□ 0.48
TCOF1-215ENST00000515516 KIF13BQ9NQT8 1826 aa18.01■□□□□ 0.47
TCOF1-215ENST00000515516 CAMTA2O94983 1202 aa18.01■□□□□ 0.47
TCOF1-215ENST00000515516 PIP4K2AP48426 406 aaPredicted RBP18.01■□□□□ 0.47
TCOF1-215ENST00000515516 PDZRN3Q9UPQ7 1066 aa18.01■□□□□ 0.47
TCOF1-215ENST00000515516 ADCY9O60503 1353 aa18.01■□□□□ 0.47
TCOF1-215ENST00000515516 VIRMAQ69YN4 1812 aaKnown RBP18■□□□□ 0.47
TCOF1-215ENST00000515516 SENP3-EIF4A1A0A087X0R7 540 aa18■□□□□ 0.47
TCOF1-215ENST00000515516 PDE6BP35913 854 aa18■□□□□ 0.47
TCOF1-215ENST00000515516 CARMIL3Q8ND23 1372 aa18■□□□□ 0.47
TCOF1-215ENST00000515516 SIPA1L3O60292 1781 aaPredicted RBP17.99■□□□□ 0.47
TCOF1-215ENST00000515516 RIPK4P57078 832 aa17.99■□□□□ 0.47
TCOF1-215ENST00000515516 LMOD3Q0VAK6 560 aa17.99■□□□□ 0.47
TCOF1-215ENST00000515516 WDR43Q15061 677 aaKnown RBP eCLIP17.99■□□□□ 0.477e-6■■■■■ 27.3
TCOF1-215ENST00000515516 CLEC4GQ6UXB4 293 aa17.99■□□□□ 0.47
TCOF1-215ENST00000515516 TTLL6Q8N841 843 aa17.99■□□□□ 0.47
TCOF1-215ENST00000515516 THUMPD2Q9BTF0 503 aaKnown RBP17.99■□□□□ 0.47
TCOF1-215ENST00000515516 BRIP1Q9BX63 1249 aa17.99■□□□□ 0.47
TCOF1-215ENST00000515516 N4BP2Q86UW6 1770 aaPredicted RBP17.99■□□□□ 0.47
TCOF1-215ENST00000515516 ST5P78524 1137 aa17.98■□□□□ 0.47
TCOF1-215ENST00000515516 C9orf131Q5VYM1 1079 aa17.98■□□□□ 0.47
TCOF1-215ENST00000515516 CNBD1Q8NA66 436 aa17.98■□□□□ 0.47
TCOF1-215ENST00000515516 PRR5LQ6MZQ0 368 aa17.97■□□□□ 0.47
TCOF1-215ENST00000515516 ZNF622Q969S3 477 aaKnown RBP eCLIP17.97■□□□□ 0.471e-6■■□□□ 12.3
TCOF1-215ENST00000515516 KIAA1551Q9HCM1 1747 aa17.96■□□□□ 0.47
TCOF1-215ENST00000515516 NBPF26B4DH59 902 aa17.96■□□□□ 0.47
TCOF1-215ENST00000515516 EIF4A1P60842 406 aaKnown RBP17.96■□□□□ 0.47
TCOF1-215ENST00000515516 NBPF10Q6P3W6 841 aaKnown RBP17.96■□□□□ 0.47
TCOF1-215ENST00000515516 NBPF5PQ86XG9 351 aaPredicted RBP17.96■□□□□ 0.47
TCOF1-215ENST00000515516 NBPF15Q8N660 670 aa17.96■□□□□ 0.47
TCOF1-215ENST00000515516 TSPYL4Q9UJ04 414 aa17.96■□□□□ 0.47
TCOF1-215ENST00000515516 TMPOP42166 694 aaKnown RBP17.95■□□□□ 0.46
TCOF1-215ENST00000515516 CCDC24Q8N4L8 307 aa17.95■□□□□ 0.46
TCOF1-215ENST00000515516 NGEFQ8N5V2 710 aa17.95■□□□□ 0.46
TCOF1-215ENST00000515516 RNF181Q9P0P0 153 aa17.95■□□□□ 0.46
TCOF1-215ENST00000515516 RGL2O15211 777 aa17.94■□□□□ 0.46
TCOF1-215ENST00000515516 NIP7Q9Y221 180 aaKnown RBP eCLIP17.94■□□□□ 0.46
TCOF1-215ENST00000515516 RRP7AQ9Y3A4 280 aaKnown RBP17.94■□□□□ 0.46
TCOF1-215ENST00000515516 ZEB1P37275 1124 aaPredicted RBP17.93■□□□□ 0.46
TCOF1-215ENST00000515516 NEUROD2Q15784 382 aa17.93■□□□□ 0.46
TCOF1-215ENST00000515516 TPTE2Q6XPS3 522 aa17.93■□□□□ 0.46
TCOF1-215ENST00000515516 KIF6Q6ZMV9 814 aa17.93■□□□□ 0.46
TCOF1-215ENST00000515516 CCDC146Q8IYE0 955 aa17.93■□□□□ 0.46
TCOF1-215ENST00000515516 RUNDC1Q96C34 613 aa17.93■□□□□ 0.46
TCOF1-215ENST00000515516 BABAM1Q9NWV8 329 aa17.93■□□□□ 0.46
TCOF1-215ENST00000515516 GTF2E1P29083 439 aaPredicted RBP17.92■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms