RNA–Protein interactions for RNA: ENST00000510569.5

NUP54-209, Transcript of nucleoporin 54, humanhuman

TSL 5

Gene NUP54, Length 494 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-209ENST00000510569 TMEM151AQ8N4L1 468 aa11.34□□□□□ -0.59
NUP54-209ENST00000510569 SCARF2Q96GP6 870 aaPredicted RBP11.34□□□□□ -0.59
NUP54-209ENST00000510569 ABHD17AQ96GS6 310 aa11.34□□□□□ -0.59
NUP54-209ENST00000510569 BNIP3LO60238 219 aa11.33□□□□□ -0.6
NUP54-209ENST00000510569 AIDAQ96BJ3 306 aa11.33□□□□□ -0.6
NUP54-209ENST00000510569 ZBTB7BO15156 539 aaPredicted RBP11.32□□□□□ -0.6
NUP54-209ENST00000510569 OIP5O43482 229 aa11.32□□□□□ -0.6
NUP54-209ENST00000510569 ATP1A2P50993 1020 aa11.32□□□□□ -0.6
NUP54-209ENST00000510569 CABP1Q9NZU7 370 aa11.32□□□□□ -0.6
NUP54-209ENST00000510569 KIAA1024Q9UPX6 916 aa11.32□□□□□ -0.6
NUP54-209ENST00000510569 GDF11O95390 407 aa11.31□□□□□ -0.6
NUP54-209ENST00000510569 TATP17735 454 aaPredicted RBP11.31□□□□□ -0.6
NUP54-209ENST00000510569 FGFR3P22607 806 aa11.31□□□□□ -0.6
NUP54-209ENST00000510569 CLDN10P78369 228 aa11.31□□□□□ -0.6
NUP54-209ENST00000510569 KANK3Q6NY19 840 aa11.31□□□□□ -0.6
NUP54-209ENST00000510569 GLMNQ92990 594 aa11.31□□□□□ -0.6
NUP54-209ENST00000510569 KLRG1Q96E93 195 aa11.31□□□□□ -0.6
NUP54-209ENST00000510569 ZCCHC2Q9C0B9 1178 aaKnown RBP11.31□□□□□ -0.6
NUP54-209ENST00000510569 PCDHGC4Q9Y5F7 938 aa11.31□□□□□ -0.6
NUP54-209ENST00000510569 IRS1P35568 1242 aa11.3□□□□□ -0.6
NUP54-209ENST00000510569 TPCN2Q8NHX9 752 aa11.3□□□□□ -0.6
NUP54-209ENST00000510569 ZDHHC1Q8WTX9 485 aa11.3□□□□□ -0.6
NUP54-209ENST00000510569 GDF2Q9UK05 429 aaPredicted RBP11.3□□□□□ -0.6
NUP54-209ENST00000510569 A0A1W2PNR3 127 aa11.29□□□□□ -0.6
NUP54-209ENST00000510569 A6NJR5 290 aa11.29□□□□□ -0.6
NUP54-209ENST00000510569 C2CD2LO14523 706 aa11.29□□□□□ -0.6
NUP54-209ENST00000510569 TEAD4Q15561 434 aa11.29□□□□□ -0.6
NUP54-209ENST00000510569 ARSJQ5FYB0 599 aaPredicted RBP11.28□□□□□ -0.6
NUP54-209ENST00000510569 SLC9A9Q8IVB4 645 aa11.28□□□□□ -0.6
NUP54-209ENST00000510569 LARGE2Q8N3Y3 721 aa11.28□□□□□ -0.6
NUP54-209ENST00000510569 NEDD1Q8NHV4 660 aa11.28□□□□□ -0.6
NUP54-209ENST00000510569 ZIC5Q96T25 663 aa11.28□□□□□ -0.6
NUP54-209ENST00000510569 M0R2N6 131 aa11.27□□□□□ -0.61
NUP54-209ENST00000510569 ATXN7O15265 892 aaPredicted RBP11.27□□□□□ -0.61
NUP54-209ENST00000510569 BMP4P12644 408 aa11.27□□□□□ -0.61
NUP54-209ENST00000510569 CTBSQ01459 385 aa11.27□□□□□ -0.61
NUP54-209ENST00000510569 CCDC102BQ68D86 513 aa11.27□□□□□ -0.61
NUP54-209ENST00000510569 TNS4Q8IZW8 715 aa11.27□□□□□ -0.61
NUP54-209ENST00000510569 SIX5Q8N196 739 aa11.27□□□□□ -0.61
NUP54-209ENST00000510569 OGFOD1Q8N543 542 aa11.27□□□□□ -0.61
NUP54-209ENST00000510569 KCTD17Q8N5Z5 321 aa11.27□□□□□ -0.61
NUP54-209ENST00000510569 GOLGA6L1Q8N7Z2 621 aa11.27□□□□□ -0.61
NUP54-209ENST00000510569 MKRN1Q9UHC7 482 aaKnown RBP11.27□□□□□ -0.61
NUP54-209ENST00000510569 PALM3A6NDB9 673 aaPredicted RBP11.26□□□□□ -0.61
NUP54-209ENST00000510569 FAM157BP0CG42 384 aa11.26□□□□□ -0.61
NUP54-209ENST00000510569 TXLNAP40222 546 aa11.26□□□□□ -0.61
NUP54-209ENST00000510569 SAMD5Q5TGI4 173 aa11.26□□□□□ -0.61
NUP54-209ENST00000510569 SLCO4C1Q6ZQN7 724 aa11.26□□□□□ -0.61
NUP54-209ENST00000510569 C1orf229Q6ZS94 237 aaPredicted RBP11.26□□□□□ -0.61
NUP54-209ENST00000510569 L3MBTL2Q969R5 705 aa11.26□□□□□ -0.61
NUP54-209ENST00000510569 HCN2Q9UL51 889 aa11.26□□□□□ -0.61
NUP54-209ENST00000510569 MAFBQ9Y5Q3 323 aaPredicted RBP11.26□□□□□ -0.61
NUP54-209ENST00000510569 PARP3Q9Y6F1 533 aa11.26□□□□□ -0.61
NUP54-209ENST00000510569 DNMT3AQ9Y6K1 912 aaPredicted RBP11.26□□□□□ -0.61
NUP54-209ENST00000510569 DKK1O94907 266 aa11.25□□□□□ -0.61
NUP54-209ENST00000510569 NOS2P35228 1153 aa11.25□□□□□ -0.61
NUP54-209ENST00000510569 TNP2Q05952 138 aa11.25□□□□□ -0.61
NUP54-209ENST00000510569 FAM182BQ5T319 152 aa11.25□□□□□ -0.61
NUP54-209ENST00000510569 PHF20L1A8MW92 1017 aa11.24□□□□□ -0.61
NUP54-209ENST00000510569 SHISA8B8ZZ34 492 aa11.24□□□□□ -0.61
NUP54-209ENST00000510569 EML1O00423 815 aa11.24□□□□□ -0.61
NUP54-209ENST00000510569 MAPTP10636 758 aaKnown RBP11.24□□□□□ -0.61
NUP54-209ENST00000510569 POTEAQ6S8J7 498 aa11.24□□□□□ -0.61
NUP54-209ENST00000510569 PODNQ7Z5L7 613 aa11.24□□□□□ -0.61
NUP54-209ENST00000510569 GPC6Q9Y625 555 aaPredicted RBP11.24□□□□□ -0.61
NUP54-209ENST00000510569 ARAFP10398 606 aa11.23□□□□□ -0.61
NUP54-209ENST00000510569 HIRAP54198 1017 aaPredicted RBP11.23□□□□□ -0.61
NUP54-209ENST00000510569 TFIP11Q9UBB9 837 aaKnown RBP11.23□□□□□ -0.61
NUP54-209ENST00000510569 CNTNAP5Q8WYK1 1306 aa11.23□□□□□ -0.61
NUP54-209ENST00000510569 DCDC2BA2VCK2 349 aa11.22□□□□□ -0.61
NUP54-209ENST00000510569 TBCELQ5QJ74 424 aa11.22□□□□□ -0.61
NUP54-209ENST00000510569 BICDL1Q6ZP65 573 aa11.22□□□□□ -0.61
NUP54-209ENST00000510569 BEND7Q8N7W2 519 aaPredicted RBP11.22□□□□□ -0.61
NUP54-209ENST00000510569 GALNT6Q8NCL4 622 aa11.22□□□□□ -0.61
NUP54-209ENST00000510569 ZNF594Q96JF6 807 aaPredicted RBP11.22□□□□□ -0.61
NUP54-209ENST00000510569 GGA1Q9UJY5 639 aa11.22□□□□□ -0.61
NUP54-209ENST00000510569 SERTM1A2A2V5 107 aa11.21□□□□□ -0.61
NUP54-209ENST00000510569 EFSO43281 561 aa11.21□□□□□ -0.61
NUP54-209ENST00000510569 PSMA6P60900 246 aaKnown RBP11.21□□□□□ -0.61
NUP54-209ENST00000510569 C7orf43Q8WVR3 580 aa11.21□□□□□ -0.61
NUP54-209ENST00000510569 EDARADDQ8WWZ3 215 aa11.21□□□□□ -0.61
NUP54-209ENST00000510569 TSPAN10Q9H1Z9 355 aaPredicted RBP11.21□□□□□ -0.61
NUP54-209ENST00000510569 KHNYNO15037 678 aaKnown RBP11.2□□□□□ -0.62
NUP54-209ENST00000510569 CD33P20138 364 aa11.2□□□□□ -0.62
NUP54-209ENST00000510569 SH3PXD2AQ5TCZ1 1133 aa11.2□□□□□ -0.62
NUP54-209ENST00000510569 AVENQ9NQS1 362 aaPredicted RBP11.2□□□□□ -0.62
NUP54-209ENST00000510569 ZNF232Q9UNY5 417 aa11.2□□□□□ -0.62
NUP54-209ENST00000510569 GJA3Q9Y6H8 435 aa11.2□□□□□ -0.62
NUP54-209ENST00000510569 EPXP11678 715 aa11.19□□□□□ -0.62
NUP54-209ENST00000510569 LAMC2Q13753 1193 aa11.19□□□□□ -0.62
NUP54-209ENST00000510569 TSEN2Q8NCE0 465 aaKnown RBP11.19□□□□□ -0.62
NUP54-209ENST00000510569 CALR3Q96L12 384 aaKnown RBP11.19□□□□□ -0.62
NUP54-209ENST00000510569 PPP1R12CQ9BZL4 782 aa11.19□□□□□ -0.62
NUP54-209ENST00000510569 HOXB4P17483 251 aaPredicted RBP11.18□□□□□ -0.62
NUP54-209ENST00000510569 SNRPNP63162 240 aaKnown RBP11.18□□□□□ -0.62
NUP54-209ENST00000510569 SFI1A8K8P3 1242 aa11.17□□□□□ -0.62
NUP54-209ENST00000510569 RASA1P20936 1047 aa11.17□□□□□ -0.62
NUP54-209ENST00000510569 C1orf53Q5VUE5 145 aa11.17□□□□□ -0.62
NUP54-209ENST00000510569 RBM19Q9Y4C8 960 aaKnown RBP11.17□□□□□ -0.62
NUP54-209ENST00000510569 STRN4Q9NRL3 753 aa11.16□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms