RNA–Protein interactions for RNA: ENST00000508466.1

LIMCH1-207, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2

Gene LIMCH1, Length 3,051 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-207ENST00000508466 ERO1AQ96HE7 468 aa8.57□□□□□ -1.04
LIMCH1-207ENST00000508466 DCTPP1Q9H773 170 aa8.57□□□□□ -1.04
LIMCH1-207ENST00000508466 ARHGEF11O15085 1522 aa8.57□□□□□ -1.04
LIMCH1-207ENST00000508466 SYNMO15061 1565 aa8.56□□□□□ -1.04
LIMCH1-207ENST00000508466 RAD50Q92878 1312 aa8.56□□□□□ -1.04
LIMCH1-207ENST00000508466 BIN1O00499 593 aa8.56□□□□□ -1.04
LIMCH1-207ENST00000508466 SNW1Q13573 536 aaKnown RBP8.56□□□□□ -1.04
LIMCH1-207ENST00000508466 REXO1L1PQ8IX06 675 aa8.56□□□□□ -1.04
LIMCH1-207ENST00000508466 GDAP1L1Q96MZ0 367 aa8.56□□□□□ -1.04
LIMCH1-207ENST00000508466 MYCBPQ99417 103 aaPredicted RBP8.56□□□□□ -1.04
LIMCH1-207ENST00000508466 EFCC1Q9HA90 598 aa8.56□□□□□ -1.04
LIMCH1-207ENST00000508466 ADAM21Q9UKJ8 722 aa8.56□□□□□ -1.04
LIMCH1-207ENST00000508466 ADGRF5Q8IZF2 1346 aa8.56□□□□□ -1.04
LIMCH1-207ENST00000508466 H3BQF6 201 aa8.56□□□□□ -1.04
LIMCH1-207ENST00000508466 PDE1AP54750 535 aa8.56□□□□□ -1.04
LIMCH1-207ENST00000508466 TTC31Q49AM3 519 aaPredicted RBP8.56□□□□□ -1.04
LIMCH1-207ENST00000508466 PLEKHO1Q53GL0 409 aaPredicted RBP8.56□□□□□ -1.04
LIMCH1-207ENST00000508466 RUFY3Q7L099 469 aa8.56□□□□□ -1.04
LIMCH1-207ENST00000508466 CDC37L1Q7L3B6 337 aa8.56□□□□□ -1.04
LIMCH1-207ENST00000508466 SRLQ86TD4 932 aa8.56□□□□□ -1.04
LIMCH1-207ENST00000508466 SUGP2Q8IX01 1082 aaKnown RBP eCLIP8.56□□□□□ -1.04
LIMCH1-207ENST00000508466 ESYT1Q9BSJ8 1104 aa8.56□□□□□ -1.04
LIMCH1-207ENST00000508466 GEMIN8Q9NWZ8 242 aaKnown RBP8.56□□□□□ -1.04
LIMCH1-207ENST00000508466 RPAP1Q9BWH6 1393 aaPredicted RBP8.55□□□□□ -1.04
LIMCH1-207ENST00000508466 GOLGA6L19H0YKK7 550 aa8.55□□□□□ -1.04
LIMCH1-207ENST00000508466 TWISTNBQ3B726 338 aaPredicted RBP8.55□□□□□ -1.04
LIMCH1-207ENST00000508466 MNS1Q8NEH6 495 aa8.55□□□□□ -1.04
LIMCH1-207ENST00000508466 PLA2R1Q13018 1463 aa8.55□□□□□ -1.04
LIMCH1-207ENST00000508466 ZMYM3Q14202 1370 aa8.55□□□□□ -1.04
LIMCH1-207ENST00000508466 BECN2A8MW95 431 aa8.55□□□□□ -1.04
LIMCH1-207ENST00000508466 ATP2B2Q01814 1243 aa8.55□□□□□ -1.04
LIMCH1-207ENST00000508466 CUL4AQ13619 759 aa8.55□□□□□ -1.04
LIMCH1-207ENST00000508466 KIRREL3Q8IZU9 778 aa8.55□□□□□ -1.04
LIMCH1-207ENST00000508466 POLD4Q9HCU8 107 aa8.55□□□□□ -1.04
LIMCH1-207ENST00000508466 SCAPERQ9BY12 1400 aa8.55□□□□□ -1.04
LIMCH1-207ENST00000508466 FRMD3A2A2Y4 597 aa8.55□□□□□ -1.04
LIMCH1-207ENST00000508466 PLEKHD1A6NEE1 506 aa8.55□□□□□ -1.04
LIMCH1-207ENST00000508466 HTATSF1O43719 755 aaKnown RBP8.55□□□□□ -1.04
LIMCH1-207ENST00000508466 SAMD1Q6SPF0 538 aaPredicted RBP8.55□□□□□ -1.04
LIMCH1-207ENST00000508466 DHX30Q7L2E3 1194 aaKnown RBP eCLIP8.55□□□□□ -1.04
LIMCH1-207ENST00000508466 MICALL1Q8N3F8 863 aa8.55□□□□□ -1.04
LIMCH1-207ENST00000508466 NCAPGQ9BPX3 1015 aa8.55□□□□□ -1.04
LIMCH1-207ENST00000508466 MBIPQ9NS73 344 aa8.55□□□□□ -1.04
LIMCH1-207ENST00000508466 SMC2O95347 1197 aa8.54□□□□□ -1.04
LIMCH1-207ENST00000508466 ADCK5Q3MIX3 580 aa8.54□□□□□ -1.04
LIMCH1-207ENST00000508466 NBPF6Q5VWK0 638 aa8.54□□□□□ -1.04
LIMCH1-207ENST00000508466 LARP1BQ659C4 914 aaKnown RBP8.54□□□□□ -1.04
LIMCH1-207ENST00000508466 NBPF4Q96M43 638 aa8.54□□□□□ -1.04
LIMCH1-207ENST00000508466 ATG3Q9NT62 314 aa8.54□□□□□ -1.04
LIMCH1-207ENST00000508466 FAM53CQ9NYF3 392 aa8.54□□□□□ -1.04
LIMCH1-207ENST00000508466 C9orf84Q5VXU9 1444 aa8.54□□□□□ -1.04
LIMCH1-207ENST00000508466 EIF3CLB5ME19 914 aaKnown RBP8.54□□□□□ -1.04
LIMCH1-207ENST00000508466 FANCGO15287 622 aa8.54□□□□□ -1.04
LIMCH1-207ENST00000508466 H2AFXP16104 143 aaPredicted RBP8.54□□□□□ -1.04
LIMCH1-207ENST00000508466 GUCY2CP25092 1073 aa8.54□□□□□ -1.04
LIMCH1-207ENST00000508466 TXLNBQ8N3L3 684 aa8.54□□□□□ -1.04
LIMCH1-207ENST00000508466 SLC26A8Q96RN1 970 aa8.54□□□□□ -1.04
LIMCH1-207ENST00000508466 PLEKHF1Q96S99 279 aa8.54□□□□□ -1.04
LIMCH1-207ENST00000508466 EIF3CQ99613 913 aaKnown RBP8.54□□□□□ -1.04
LIMCH1-207ENST00000508466 DEF6Q9H4E7 631 aa8.54□□□□□ -1.04
LIMCH1-207ENST00000508466 CD109Q6YHK3 1445 aa8.54□□□□□ -1.04
LIMCH1-207ENST00000508466 CADPSQ9ULU8 1353 aa8.54□□□□□ -1.04
LIMCH1-207ENST00000508466 LIG3P49916 1009 aa8.53□□□□□ -1.04
LIMCH1-207ENST00000508466 EVCP57679 992 aa8.53□□□□□ -1.04
LIMCH1-207ENST00000508466 E4F1Q66K89 784 aaPredicted RBP8.53□□□□□ -1.04
LIMCH1-207ENST00000508466 TTC19Q6DKK2 380 aaPredicted RBP8.53□□□□□ -1.04
LIMCH1-207ENST00000508466 CEP85Q6P2H3 762 aa8.53□□□□□ -1.04
LIMCH1-207ENST00000508466 TMC6Q7Z403 805 aa8.53□□□□□ -1.04
LIMCH1-207ENST00000508466 PDE11AQ9HCR9 933 aa8.53□□□□□ -1.04
LIMCH1-207ENST00000508466 SUFUQ9UMX1 484 aa8.53□□□□□ -1.04
LIMCH1-207ENST00000508466 MTMR6Q9Y217 621 aa8.53□□□□□ -1.04
LIMCH1-207ENST00000508466 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP8.53□□□□□ -1.04
LIMCH1-207ENST00000508466 TPM3P06753 285 aa8.53□□□□□ -1.04
LIMCH1-207ENST00000508466 MCCP23508 829 aa8.53□□□□□ -1.04
LIMCH1-207ENST00000508466 CHMLP26374 656 aa8.53□□□□□ -1.04
LIMCH1-207ENST00000508466 MNAT1P51948 309 aa8.53□□□□□ -1.04
LIMCH1-207ENST00000508466 NYAP1Q6ZVC0 841 aa8.53□□□□□ -1.04
LIMCH1-207ENST00000508466 PLA2G4DQ86XP0 818 aa8.53□□□□□ -1.04
LIMCH1-207ENST00000508466 IRX2Q9BZI1 471 aaPredicted RBP8.53□□□□□ -1.04
LIMCH1-207ENST00000508466 TSPYL1Q9H0U9 437 aa8.53□□□□□ -1.04
LIMCH1-207ENST00000508466 CXorf56Q9H5V9 222 aa8.53□□□□□ -1.04
LIMCH1-207ENST00000508466 SLC24A3Q9HC58 644 aa8.53□□□□□ -1.04
LIMCH1-207ENST00000508466 POLR3AO14802 1390 aaPredicted RBP8.53□□□□□ -1.04
LIMCH1-207ENST00000508466 TBC1D8O95759 1140 aa8.52□□□□□ -1.04
LIMCH1-207ENST00000508466 GNAI3P08754 354 aa8.52□□□□□ -1.04
LIMCH1-207ENST00000508466 SCP2P22307 547 aa8.52□□□□□ -1.04
LIMCH1-207ENST00000508466 BRPF1P55201 1214 aaPredicted RBP8.52□□□□□ -1.04
LIMCH1-207ENST00000508466 CCZ1BP86790 482 aa8.52□□□□□ -1.04
LIMCH1-207ENST00000508466 CCZ1P86791 482 aaPredicted RBP8.52□□□□□ -1.04
LIMCH1-207ENST00000508466 FKBP15Q5T1M5 1219 aa8.52□□□□□ -1.04
LIMCH1-207ENST00000508466 FBXW10Q5XX13 1052 aa8.52□□□□□ -1.04
LIMCH1-207ENST00000508466 STK11IPQ8N1F8 1099 aa8.52□□□□□ -1.04
LIMCH1-207ENST00000508466 AOPEPQ8N6M6 819 aa8.52□□□□□ -1.04
LIMCH1-207ENST00000508466 SPATA32Q96LK8 384 aa8.52□□□□□ -1.04
LIMCH1-207ENST00000508466 KDM5DQ9BY66 1539 aa8.52□□□□□ -1.04
LIMCH1-207ENST00000508466 TPM4P67936 248 aa8.52□□□□□ -1.05
LIMCH1-207ENST00000508466 GUCY1B3Q02153 619 aa8.52□□□□□ -1.05
LIMCH1-207ENST00000508466 PPP2R5AQ15172 486 aa8.52□□□□□ -1.05
LIMCH1-207ENST00000508466 PUF60Q9UHX1 559 aaKnown RBP8.52□□□□□ -1.05
LIMCH1-207ENST00000508466 CC2D2AQ9P2K1 1620 aa8.52□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 56.9 ms