RNA–Protein interactions for RNA: ENST00000490910.5

CRNKL1-204, Transcript of crooked neck pre-mRNA splicing factor 1, humanhuman

TSL 1 (best)

Gene CRNKL1, Length 4,183 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CRNKL1-204ENST00000490910 GBP3Q9H0R5 595 aa13.22□□□□□ -0.29
CRNKL1-204ENST00000490910 RSPH14Q9UHP6 348 aa13.22□□□□□ -0.29
CRNKL1-204ENST00000490910 NPHP3Q7Z494 1330 aa13.22□□□□□ -0.29
CRNKL1-204ENST00000490910 PES1O00541 588 aaKnown RBP13.22□□□□□ -0.29
CRNKL1-204ENST00000490910 IPO7O95373 1038 aaKnown RBP13.22□□□□□ -0.29
CRNKL1-204ENST00000490910 SYCP1Q15431 976 aa13.22□□□□□ -0.29
CRNKL1-204ENST00000490910 TOMM22Q9NS69 142 aa13.22□□□□□ -0.29
CRNKL1-204ENST00000490910 AMPHP49418 695 aa13.22□□□□□ -0.29
CRNKL1-204ENST00000490910 ZNF75DP51815 510 aa13.22□□□□□ -0.29
CRNKL1-204ENST00000490910 LRMPQ12912 555 aa13.22□□□□□ -0.29
CRNKL1-204ENST00000490910 NCBP3Q53F19 620 aaKnown RBP13.22□□□□□ -0.29
CRNKL1-204ENST00000490910 SRRTQ9BXP5 876 aaKnown RBP13.22□□□□□ -0.29
CRNKL1-204ENST00000490910 NUP153P49790 1475 aaKnown RBP13.21□□□□□ -0.29
CRNKL1-204ENST00000490910 TERF2Q15554 542 aa13.21□□□□□ -0.29
CRNKL1-204ENST00000490910 CPLX2Q6PUV4 134 aaKnown RBP13.21□□□□□ -0.29
CRNKL1-204ENST00000490910 SYT10Q6XYQ8 523 aa13.21□□□□□ -0.29
CRNKL1-204ENST00000490910 DDX11Q96FC9 970 aa13.21□□□□□ -0.29
CRNKL1-204ENST00000490910 SPG7Q9UQ90 795 aa13.21□□□□□ -0.29
CRNKL1-204ENST00000490910 WDR62O43379 1518 aa13.21□□□□□ -0.29
CRNKL1-204ENST00000490910 KIAA0754O94854 1291 aa13.21□□□□□ -0.29
CRNKL1-204ENST00000490910 TTC31Q49AM3 519 aaPredicted RBP13.21□□□□□ -0.29
CRNKL1-204ENST00000490910 ZSCAN25Q6NSZ9 544 aa13.21□□□□□ -0.3
CRNKL1-204ENST00000490910 CEP85Q6P2H3 762 aa13.21□□□□□ -0.3
CRNKL1-204ENST00000490910 TSPYL6Q8N831 410 aa13.21□□□□□ -0.3
CRNKL1-204ENST00000490910 FAM107BQ9H098 131 aa13.21□□□□□ -0.3
CRNKL1-204ENST00000490910 SAMD9Q5K651 1589 aa13.2□□□□□ -0.3
CRNKL1-204ENST00000490910 PTPRCP08575 1304 aa13.2□□□□□ -0.3
CRNKL1-204ENST00000490910 F6X3S4 739 aa13.2□□□□□ -0.3
CRNKL1-204ENST00000490910 CAPN2P17655 700 aa13.2□□□□□ -0.3
CRNKL1-204ENST00000490910 AK2P54819 239 aa13.2□□□□□ -0.3
CRNKL1-204ENST00000490910 CBX8Q9HC52 389 aa13.2□□□□□ -0.3
CRNKL1-204ENST00000490910 SRGAP3O43295 1099 aa13.2□□□□□ -0.3
CRNKL1-204ENST00000490910 DDIT3P35638 169 aa13.2□□□□□ -0.3
CRNKL1-204ENST00000490910 NCBP1Q09161 790 aaKnown RBP13.2□□□□□ -0.3
CRNKL1-204ENST00000490910 SULT6B1Q6IMI4 303 aa13.2□□□□□ -0.3
CRNKL1-204ENST00000490910 NECAB1Q8N987 351 aa13.2□□□□□ -0.3
CRNKL1-204ENST00000490910 TMX1Q9H3N1 280 aa13.2□□□□□ -0.3
CRNKL1-204ENST00000490910 DDX41Q9UJV9 622 aaKnown RBP13.2□□□□□ -0.3
CRNKL1-204ENST00000490910 GLRX3O76003 335 aaKnown RBP13.19□□□□□ -0.3
CRNKL1-204ENST00000490910 ANKRD20A12PQ8NF67 263 aa13.19□□□□□ -0.3
CRNKL1-204ENST00000490910 SPTLC3Q9NUV7 552 aa13.19□□□□□ -0.3
CRNKL1-204ENST00000490910 CABP1Q9NZU7 370 aa13.19□□□□□ -0.3
CRNKL1-204ENST00000490910 ATAD2Q6PL18 1390 aa13.19□□□□□ -0.3
CRNKL1-204ENST00000490910 CHMLP26374 656 aa13.19□□□□□ -0.3
CRNKL1-204ENST00000490910 KIF1BPQ96EK5 621 aa13.19□□□□□ -0.3
CRNKL1-204ENST00000490910 TRIM35Q9UPQ4 493 aa13.19□□□□□ -0.3
CRNKL1-204ENST00000490910 CCDC9Q9Y3X0 531 aaKnown RBP13.19□□□□□ -0.3
CRNKL1-204ENST00000490910 TOP1P11387 765 aaKnown RBP13.19□□□□□ -0.3
CRNKL1-204ENST00000490910 GTF2E1P29083 439 aaPredicted RBP13.19□□□□□ -0.3
CRNKL1-204ENST00000490910 KIF2CQ99661 725 aa13.19□□□□□ -0.3
CRNKL1-204ENST00000490910 GNG11P61952 73 aa13.18□□□□□ -0.3
CRNKL1-204ENST00000490910 TRIM29Q14134 588 aa13.18□□□□□ -0.3
CRNKL1-204ENST00000490910 DNAAF4Q8WXU2 420 aa13.18□□□□□ -0.3
CRNKL1-204ENST00000490910 KDM5DQ9BY66 1539 aa13.18□□□□□ -0.3
CRNKL1-204ENST00000490910 A0A1B0GUL7 405 aa13.18□□□□□ -0.3
CRNKL1-204ENST00000490910 MNAT1P51948 309 aa13.18□□□□□ -0.3
CRNKL1-204ENST00000490910 MCM6Q14566 821 aa13.18□□□□□ -0.3
CRNKL1-204ENST00000490910 GIMAP7Q8NHV1 300 aa13.18□□□□□ -0.3
CRNKL1-204ENST00000490910 ERCC6Q03468 1493 aa13.18□□□□□ -0.3
CRNKL1-204ENST00000490910 SHANK2Q9UPX8 1470 aa13.18□□□□□ -0.3
CRNKL1-204ENST00000490910 ZBTB22O15209 634 aa13.18□□□□□ -0.3
CRNKL1-204ENST00000490910 FSIP1Q8NA03 581 aa13.18□□□□□ -0.3
CRNKL1-204ENST00000490910 C8orf58Q8NAV2 365 aa13.18□□□□□ -0.3
CRNKL1-204ENST00000490910 CAGE1Q8TC20 777 aa13.18□□□□□ -0.3
CRNKL1-204ENST00000490910 NCOA3Q9Y6Q9 1424 aa13.18□□□□□ -0.3
CRNKL1-204ENST00000490910 WDR7Q9Y4E6 1490 aa13.18□□□□□ -0.3
CRNKL1-204ENST00000490910 CCAR1Q8IX12 1150 aaKnown RBP13.17□□□□□ -0.3
CRNKL1-204ENST00000490910 PRAM1Q96QH2 718 aa13.17□□□□□ -0.3
CRNKL1-204ENST00000490910 GOLGA6L9A6NEM1 432 aa13.17□□□□□ -0.3
CRNKL1-204ENST00000490910 KRT32Q14532 448 aa13.17□□□□□ -0.3
CRNKL1-204ENST00000490910 ZSCAN26Q16670 478 aa13.17□□□□□ -0.3
CRNKL1-204ENST00000490910 ERC1Q8IUD2 1116 aa13.17□□□□□ -0.3
CRNKL1-204ENST00000490910 ZNF710Q8N1W2 664 aa13.17□□□□□ -0.3
CRNKL1-204ENST00000490910 EIF2AK3Q9NZJ5 1116 aaKnown RBP13.17□□□□□ -0.3
CRNKL1-204ENST00000490910 CTNNA3Q9UI47 895 aa13.17□□□□□ -0.3
CRNKL1-204ENST00000490910 HSP90AB3PQ58FF7 597 aa13.17□□□□□ -0.3
CRNKL1-204ENST00000490910 PPFIBP1Q86W92 1011 aa13.17□□□□□ -0.3
CRNKL1-204ENST00000490910 CERS3Q8IU89 383 aa13.17□□□□□ -0.3
CRNKL1-204ENST00000490910 ZSWIM4Q9H7M6 989 aa13.17□□□□□ -0.3
CRNKL1-204ENST00000490910 IFT140Q96RY7 1462 aa13.16□□□□□ -0.3
CRNKL1-204ENST00000490910 POTEB2H3BUK9 544 aa13.16□□□□□ -0.3
CRNKL1-204ENST00000490910 CDR1P51861 262 aa13.16□□□□□ -0.3
CRNKL1-204ENST00000490910 IRX5P78411 483 aaPredicted RBP13.16□□□□□ -0.3
CRNKL1-204ENST00000490910 AOPEPQ8N6M6 819 aa13.16□□□□□ -0.3
CRNKL1-204ENST00000490910 NEK11Q8NG66 645 aa13.16□□□□□ -0.3
CRNKL1-204ENST00000490910 SMARCE1Q969G3 411 aa13.16□□□□□ -0.3
CRNKL1-204ENST00000490910 PPIP5K1Q6PFW1 1433 aa13.16□□□□□ -0.3
CRNKL1-204ENST00000490910 RAPGEF6Q8TEU7 1601 aa13.16□□□□□ -0.3
CRNKL1-204ENST00000490910 ERCC6LQ2NKX8 1250 aa13.16□□□□□ -0.3
CRNKL1-204ENST00000490910 KIF4BQ2VIQ3 1234 aa13.16□□□□□ -0.3
CRNKL1-204ENST00000490910 JMYQ8N9B5 988 aa13.15□□□□□ -0.3
CRNKL1-204ENST00000490910 CRACR2AQ9BSW2 395 aa13.15□□□□□ -0.3
CRNKL1-204ENST00000490910 USP16Q9Y5T5 823 aa13.15□□□□□ -0.3
CRNKL1-204ENST00000490910 CYP2E1P05181 493 aaPredicted RBP13.15□□□□□ -0.3
CRNKL1-204ENST00000490910 FILIP1LQ4L180 1135 aa13.15□□□□□ -0.3
CRNKL1-204ENST00000490910 LTV1Q96GA3 475 aaPredicted RBP13.15□□□□□ -0.3
CRNKL1-204ENST00000490910 NLRP1Q9C000 1473 aa13.15□□□□□ -0.3
CRNKL1-204ENST00000490910 SHTN1A0MZ66 631 aa13.15□□□□□ -0.3
CRNKL1-204ENST00000490910 EVCP57679 992 aa13.15□□□□□ -0.3
CRNKL1-204ENST00000490910 MCM10Q7L590 875 aa13.15□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms