RNA–Protein interactions for RNA: ENST00000490193.5

USP39-216, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 5

Gene USP39, Length 1,028 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-216ENST00000490193 DPEP1P16444 411 aa11.34□□□□□ -0.59
USP39-216ENST00000490193 KCNA3P22001 575 aa11.34□□□□□ -0.59
USP39-216ENST00000490193 RBM46Q8TBY0 533 aaKnown RBP11.34□□□□□ -0.59
USP39-216ENST00000490193 NMRK2Q9NPI5 230 aa11.34□□□□□ -0.59
USP39-216ENST00000490193 FCHSD2O94868 740 aa11.33□□□□□ -0.6
USP39-216ENST00000490193 RFC4P35249 363 aa11.33□□□□□ -0.6
USP39-216ENST00000490193 ARHGAP27Q6ZUM4 889 aa11.33□□□□□ -0.6
USP39-216ENST00000490193 PARP3Q9Y6F1 533 aa11.33□□□□□ -0.6
USP39-216ENST00000490193 SCN11AQ9UI33 1791 aa11.33□□□□□ -0.6
USP39-216ENST00000490193 DLEC1Q9Y238 1755 aa11.31□□□□□ -0.6
USP39-216ENST00000490193 PRELPP51888 382 aa11.31□□□□□ -0.6
USP39-216ENST00000490193 FSTL1Q12841 308 aa11.31□□□□□ -0.6
USP39-216ENST00000490193 AMOTQ4VCS5 1084 aa11.31□□□□□ -0.6
USP39-216ENST00000490193 PLEKHO1Q53GL0 409 aaPredicted RBP11.31□□□□□ -0.6
USP39-216ENST00000490193 C9orf131Q5VYM1 1079 aa11.31□□□□□ -0.6
USP39-216ENST00000490193 PIM2Q9P1W9 311 aa11.31□□□□□ -0.6
USP39-216ENST00000490193 NRXN2Q9P2S2 1712 aa11.31□□□□□ -0.6
USP39-216ENST00000490193 USP42Q9H9J4 1324 aaKnown RBP11.31□□□□□ -0.6
USP39-216ENST00000490193 KCPQ6ZWJ8 1503 aa11.3□□□□□ -0.6
USP39-216ENST00000490193 JMYQ8N9B5 988 aa11.3□□□□□ -0.6
USP39-216ENST00000490193 TIMELESSQ9UNS1 1208 aa11.3□□□□□ -0.6
USP39-216ENST00000490193 KDM2BQ8NHM5 1336 aa11.3□□□□□ -0.6
USP39-216ENST00000490193 AFDNP55196 1824 aaKnown RBP11.3□□□□□ -0.6
USP39-216ENST00000490193 PCNTO95613 3336 aa11.3□□□□□ -0.6
USP39-216ENST00000490193 CRKLP46109 303 aaKnown RBP11.29□□□□□ -0.6
USP39-216ENST00000490193 CABP4P57796 275 aa11.29□□□□□ -0.6
USP39-216ENST00000490193 DDR1Q08345 913 aa11.29□□□□□ -0.6
USP39-216ENST00000490193 ZNF530Q6P9A1 599 aaPredicted RBP11.29□□□□□ -0.6
USP39-216ENST00000490193 TNS4Q8IZW8 715 aa11.29□□□□□ -0.6
USP39-216ENST00000490193 KLRG1Q96E93 195 aa11.29□□□□□ -0.6
USP39-216ENST00000490193 VIRMAQ69YN4 1812 aaKnown RBP11.29□□□□□ -0.6
USP39-216ENST00000490193 ZC3H4Q9UPT8 1303 aaKnown RBP11.29□□□□□ -0.6
USP39-216ENST00000490193 MRC1P22897 1456 aa11.28□□□□□ -0.6
USP39-216ENST00000490193 HTRA3P83110 453 aa11.28□□□□□ -0.6
USP39-216ENST00000490193 FKBP8Q14318 412 aa11.28□□□□□ -0.6
USP39-216ENST00000490193 DALRD3Q5D0E6 543 aaKnown RBP11.28□□□□□ -0.6
USP39-216ENST00000490193 C16orf71Q8IYS4 520 aaPredicted RBP11.28□□□□□ -0.6
USP39-216ENST00000490193 POLRMTO00411 1230 aaKnown RBP11.27□□□□□ -0.61
USP39-216ENST00000490193 PTCD1O75127 700 aaKnown RBP11.27□□□□□ -0.61
USP39-216ENST00000490193 TM4SF1P30408 202 aa11.27□□□□□ -0.61
USP39-216ENST00000490193 TNNT2P45379 298 aaPredicted RBP11.27□□□□□ -0.61
USP39-216ENST00000490193 MTHFSP49914 203 aa11.27□□□□□ -0.61
USP39-216ENST00000490193 C1orf141Q5JVX7 400 aa11.27□□□□□ -0.61
USP39-216ENST00000490193 SRP68Q9UHB9 627 aaKnown RBP11.27□□□□□ -0.61
USP39-216ENST00000490193 TIAM2Q8IVF5 1701 aa11.26□□□□□ -0.61
USP39-216ENST00000490193 INTS5Q6P9B9 1019 aaKnown RBP11.26□□□□□ -0.61
USP39-216ENST00000490193 NFATC2IPQ8NCF5 419 aa11.26□□□□□ -0.61
USP39-216ENST00000490193 PLSCR2Q9NRY7 297 aa11.26□□□□□ -0.61
USP39-216ENST00000490193 RNF181Q9P0P0 153 aa11.26□□□□□ -0.61
USP39-216ENST00000490193 CCDC88AQ3V6T2 1871 aa11.25□□□□□ -0.61
USP39-216ENST00000490193 CHRNA5P30532 468 aa11.25□□□□□ -0.61
USP39-216ENST00000490193 AEBP1Q8IUX7 1158 aa11.25□□□□□ -0.61
USP39-216ENST00000490193 CREBZFQ9NS37 354 aa11.25□□□□□ -0.61
USP39-216ENST00000490193 UBR2Q8IWV8 1755 aa11.25□□□□□ -0.61
USP39-216ENST00000490193 SMC1BQ8NDV3 1235 aa11.24□□□□□ -0.61
USP39-216ENST00000490193 RRAGCQ9HB90 399 aa11.24□□□□□ -0.61
USP39-216ENST00000490193 SOS1Q07889 1333 aaPredicted RBP11.24□□□□□ -0.61
USP39-216ENST00000490193 DICER1Q9UPY3 1922 aaKnown RBP11.23□□□□□ -0.61
USP39-216ENST00000490193 SLC34A2O95436 690 aa11.23□□□□□ -0.61
USP39-216ENST00000490193 ZPR1O75312 459 aa11.22□□□□□ -0.61
USP39-216ENST00000490193 CYP19A1P11511 503 aaPredicted RBP11.22□□□□□ -0.61
USP39-216ENST00000490193 IL13P35225 146 aa11.22□□□□□ -0.61
USP39-216ENST00000490193 COL15A1P39059 1388 aa11.22□□□□□ -0.61
USP39-216ENST00000490193 AKAP4Q5JQC9 854 aa11.22□□□□□ -0.61
USP39-216ENST00000490193 USPL1Q5W0Q7 1092 aa11.22□□□□□ -0.61
USP39-216ENST00000490193 SULT6B1Q6IMI4 303 aa11.22□□□□□ -0.61
USP39-216ENST00000490193 DNAJC10Q8IXB1 793 aa11.22□□□□□ -0.61
USP39-216ENST00000490193 PANK3Q9H999 370 aa11.22□□□□□ -0.61
USP39-216ENST00000490193 SLC52A2Q9HAB3 445 aa11.22□□□□□ -0.61
USP39-216ENST00000490193 CLSPNQ9HAW4 1339 aa11.22□□□□□ -0.61
USP39-216ENST00000490193 NARFQ9UHQ1 456 aa11.22□□□□□ -0.61
USP39-216ENST00000490193 ANKRD31Q8N7Z5 1873 aa11.21□□□□□ -0.61
USP39-216ENST00000490193 GLTPD2A6NH11 291 aa11.21□□□□□ -0.61
USP39-216ENST00000490193 LMNB1P20700 586 aa11.21□□□□□ -0.61
USP39-216ENST00000490193 RASSF7Q02833 373 aa11.21□□□□□ -0.61
USP39-216ENST00000490193 NFIXQ14938 502 aa11.21□□□□□ -0.61
USP39-216ENST00000490193 OTUD5Q96G74 571 aa11.21□□□□□ -0.61
USP39-216ENST00000490193 FER1L6Q2WGJ9 1857 aa11.21□□□□□ -0.62
USP39-216ENST00000490193 SCN7AQ01118 1682 aa11.2□□□□□ -0.62
USP39-216ENST00000490193 GALR2O43603 387 aaPredicted RBP11.2□□□□□ -0.62
USP39-216ENST00000490193 VEGFAP15692 232 aaPredicted RBP11.2□□□□□ -0.62
USP39-216ENST00000490193 MORC1Q86VD1 984 aa11.2□□□□□ -0.62
USP39-216ENST00000490193 VSIG10Q8N0Z9 540 aa11.2□□□□□ -0.62
USP39-216ENST00000490193 POLR3GLQ9BT43 218 aa11.2□□□□□ -0.62
USP39-216ENST00000490193 BCL2L12Q9HB09 334 aa11.2□□□□□ -0.62
USP39-216ENST00000490193 COL11A2P13942 1736 aaPredicted RBP11.19□□□□□ -0.62
USP39-216ENST00000490193 EIF4G2P78344 907 aaKnown RBP eCLIP11.19□□□□□ -0.62
USP39-216ENST00000490193 TTLL6Q8N841 843 aa11.19□□□□□ -0.62
USP39-216ENST00000490193 LGR6Q9HBX8 967 aa11.19□□□□□ -0.62
USP39-216ENST00000490193 ZBTB1Q9Y2K1 713 aa11.19□□□□□ -0.62
USP39-216ENST00000490193 SIPA1L3O60292 1781 aaPredicted RBP11.18□□□□□ -0.62
USP39-216ENST00000490193 ARFGEF2Q9Y6D5 1785 aa11.18□□□□□ -0.62
USP39-216ENST00000490193 CARMIL3Q8ND23 1372 aa11.18□□□□□ -0.62
USP39-216ENST00000490193 NFKBIEO00221 500 aa11.18□□□□□ -0.62
USP39-216ENST00000490193 RNMTO43148 476 aaKnown RBP11.18□□□□□ -0.62
USP39-216ENST00000490193 SERPINB2P05120 415 aa11.18□□□□□ -0.62
USP39-216ENST00000490193 TRIM26Q12899 539 aaPredicted RBP11.18□□□□□ -0.62
USP39-216ENST00000490193 HSPA1AP0DMV8 641 aaKnown RBP11.17□□□□□ -0.62
USP39-216ENST00000490193 HSPA1BP0DMV9 641 aaKnown RBP11.17□□□□□ -0.62
USP39-216ENST00000490193 HSPA5P11021 654 aaKnown RBP11.17□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 103.6 ms