RNA–Protein interactions for RNA: ENST00000489573.5

SMC4-221, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 1 (best)

Gene SMC4, Length 1,553 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-221ENST00000489573 FLIIQ13045 1269 aa27.52■■■□□ 2
SMC4-221ENST00000489573 DBF4Q9UBU7 674 aaPredicted RBP27.52■■■□□ 2
SMC4-221ENST00000489573 DDX19BQ9UMR2 479 aa27.52■■■□□ 2
SMC4-221ENST00000489573 LAMB4A4D0S4 1761 aa27.49■■□□□ 1.99
SMC4-221ENST00000489573 SYTL4Q96C24 671 aaPredicted RBP27.49■■□□□ 1.99
SMC4-221ENST00000489573 QTRT2Q9H974 415 aaKnown RBP27.49■■□□□ 1.99
SMC4-221ENST00000489573 PRIM1P49642 420 aaKnown RBP27.48■■□□□ 1.99
SMC4-221ENST00000489573 ATG3Q9NT62 314 aa27.48■■□□□ 1.99
SMC4-221ENST00000489573 ASAP1Q9ULH1 1129 aa27.48■■□□□ 1.99
SMC4-221ENST00000489573 ONECUT3O60422 494 aaPredicted RBP27.47■■□□□ 1.99
SMC4-221ENST00000489573 FKBP5Q13451 457 aaPredicted RBP27.47■■□□□ 1.99
SMC4-221ENST00000489573 PTCD1O75127 700 aaKnown RBP27.46■■□□□ 1.99
SMC4-221ENST00000489573 DDX21Q9NR30 783 aaKnown RBP eCLIP27.46■■□□□ 1.991e-26■■■■■ 198.7
SMC4-221ENST00000489573 INTS3Q68E01 1043 aaKnown RBP27.45■■□□□ 1.99
SMC4-221ENST00000489573 PHAXQ9H814 394 aaKnown RBP27.45■■□□□ 1.99
SMC4-221ENST00000489573 USP16Q9Y5T5 823 aa27.45■■□□□ 1.99
SMC4-221ENST00000489573 ACSBG1Q96GR2 724 aa27.44■■□□□ 1.98
SMC4-221ENST00000489573 HYPKQ9NX55 129 aa27.44■■□□□ 1.98
SMC4-221ENST00000489573 ANXA1P04083 346 aa27.43■■□□□ 1.98
SMC4-221ENST00000489573 PROSER3Q2NL68 480 aa27.43■■□□□ 1.98
SMC4-221ENST00000489573 CHMP4BQ9H444 224 aaKnown RBP27.43■■□□□ 1.98
SMC4-221ENST00000489573 PDIA6Q15084 440 aa27.42■■□□□ 1.98
SMC4-221ENST00000489573 ZNF772Q68DY9 489 aaPredicted RBP27.42■■□□□ 1.98
SMC4-221ENST00000489573 VSIG10Q8N0Z9 540 aa27.42■■□□□ 1.98
SMC4-221ENST00000489573 ERBB4Q15303 1308 aa27.41■■□□□ 1.98
SMC4-221ENST00000489573 F6X3S4 739 aa27.41■■□□□ 1.98
SMC4-221ENST00000489573 SEPT12Q8IYM1 358 aa27.41■■□□□ 1.98
SMC4-221ENST00000489573 PXDNLA1KZ92 1463 aa27.41■■□□□ 1.98
SMC4-221ENST00000489573 CCT4P50991 539 aaKnown RBP27.39■■□□□ 1.98
SMC4-221ENST00000489573 SLC4A10Q6U841 1118 aa27.39■■□□□ 1.97
SMC4-221ENST00000489573 RBM42Q9BTD8 480 aaKnown RBP27.39■■□□□ 1.97
SMC4-221ENST00000489573 ZBTB40Q9NUA8 1239 aa27.39■■□□□ 1.97
SMC4-221ENST00000489573 KAT6BQ8WYB5 2073 aa27.38■■□□□ 1.97
SMC4-221ENST00000489573 ZBTB7BO15156 539 aaPredicted RBP27.38■■□□□ 1.97
SMC4-221ENST00000489573 TEX13AQ9BXU3 409 aaPredicted RBP27.38■■□□□ 1.97
SMC4-221ENST00000489573 N4BP2Q86UW6 1770 aaPredicted RBP27.36■■□□□ 1.97
SMC4-221ENST00000489573 MYL6BP14649 208 aa27.35■■□□□ 1.97
SMC4-221ENST00000489573 ADCY9O60503 1353 aa27.35■■□□□ 1.97
SMC4-221ENST00000489573 KCNQ2O43526 872 aa27.35■■□□□ 1.97
SMC4-221ENST00000489573 DDX58O95786 925 aaKnown RBP27.35■■□□□ 1.97
SMC4-221ENST00000489573 PCDHB15Q9Y5E8 787 aa27.35■■□□□ 1.97
SMC4-221ENST00000489573 LRP10Q7Z4F1 713 aa27.34■■□□□ 1.97
SMC4-221ENST00000489573 DNAJC10Q8IXB1 793 aa27.34■■□□□ 1.97
SMC4-221ENST00000489573 PI4KAP2A4QPH2 592 aa27.33■■□□□ 1.97
SMC4-221ENST00000489573 PI4KAP1Q8N8J0 262 aa27.33■■□□□ 1.97
SMC4-221ENST00000489573 DNAAF4Q8WXU2 420 aa27.33■■□□□ 1.97
SMC4-221ENST00000489573 SMARCC1Q92922 1105 aaPredicted RBP27.33■■□□□ 1.97
SMC4-221ENST00000489573 KDM2BQ8NHM5 1336 aa27.33■■□□□ 1.97
SMC4-221ENST00000489573 NHSQ6T4R5 1651 aa27.32■■□□□ 1.96
SMC4-221ENST00000489573 RBM6P78332 1123 aaKnown RBP27.32■■□□□ 1.96
SMC4-221ENST00000489573 KSR2Q6VAB6 950 aa27.32■■□□□ 1.96
SMC4-221ENST00000489573 XAGE3Q8WTP9 111 aa27.32■■□□□ 1.96
SMC4-221ENST00000489573 PIP4K2AP48426 406 aaPredicted RBP27.31■■□□□ 1.96
SMC4-221ENST00000489573 AIMP1Q12904 312 aaKnown RBP27.31■■□□□ 1.96
SMC4-221ENST00000489573 CENPQQ7L2Z9 268 aaPredicted RBP27.31■■□□□ 1.96
SMC4-221ENST00000489573 SLC4A9Q96Q91 983 aa27.31■■□□□ 1.96
SMC4-221ENST00000489573 PALLDQ8WX93 1383 aa27.31■■□□□ 1.96
SMC4-221ENST00000489573 ATP10DQ9P241 1426 aa27.31■■□□□ 1.96
SMC4-221ENST00000489573 NBPF26B4DH59 902 aa27.31■■□□□ 1.96
SMC4-221ENST00000489573 STARD3NLO95772 234 aa27.31■■□□□ 1.96
SMC4-221ENST00000489573 A1BGP04217 495 aa27.31■■□□□ 1.96
SMC4-221ENST00000489573 NBPF14Q5TI25 921 aa27.31■■□□□ 1.96
SMC4-221ENST00000489573 NBPF10Q6P3W6 841 aaKnown RBP27.31■■□□□ 1.96
SMC4-221ENST00000489573 NBPF15Q8N660 670 aa27.31■■□□□ 1.96
SMC4-221ENST00000489573 COPS6Q7L5N1 327 aa27.3■■□□□ 1.96
SMC4-221ENST00000489573 MAP3K2Q9Y2U5 619 aa27.3■■□□□ 1.96
SMC4-221ENST00000489573 TJP1Q07157 1748 aa27.3■■□□□ 1.96
SMC4-221ENST00000489573 FAM182BQ5T319 152 aa27.29■■□□□ 1.96
SMC4-221ENST00000489573 CICQ96RK0 1608 aaPredicted RBP27.27■■□□□ 1.96
SMC4-221ENST00000489573 SRCIN1Q9C0H9 1055 aa27.27■■□□□ 1.96
SMC4-221ENST00000489573 LOC102724428A0A0B4J2F2 783 aa27.26■■□□□ 1.96
SMC4-221ENST00000489573 IGHDP01880 384 aa27.26■■□□□ 1.96
SMC4-221ENST00000489573 SIK1P57059 783 aa27.26■■□□□ 1.96
SMC4-221ENST00000489573 BEND3Q5T5X7 828 aa27.26■■□□□ 1.96
SMC4-221ENST00000489573 PELP1Q8IZL8 1130 aaKnown RBP27.26■■□□□ 1.96
SMC4-221ENST00000489573 MEIS3Q99687 375 aa27.26■■□□□ 1.96
SMC4-221ENST00000489573 RWDD1Q9H446 243 aaPredicted RBP27.26■■□□□ 1.96
SMC4-221ENST00000489573 CYP19A1P11511 503 aaPredicted RBP27.26■■□□□ 1.95
SMC4-221ENST00000489573 RIC3Q7Z5B4 369 aa27.26■■□□□ 1.95
SMC4-221ENST00000489573 KRT27Q7Z3Y8 459 aa27.25■■□□□ 1.95
SMC4-221ENST00000489573 C1orf115Q9H7X2 142 aa27.25■■□□□ 1.95
SMC4-221ENST00000489573 ANKRD13DQ6ZTN6 518 aa27.24■■□□□ 1.95
SMC4-221ENST00000489573 BTAF1O14981 1849 aa27.24■■□□□ 1.95
SMC4-221ENST00000489573 BRWD3Q6RI45 1802 aa27.24■■□□□ 1.95
SMC4-221ENST00000489573 ATP6V1AP38606 617 aa27.23■■□□□ 1.95
SMC4-221ENST00000489573 HDAC1Q13547 482 aaPredicted RBP27.23■■□□□ 1.95
SMC4-221ENST00000489573 SBF2Q86WG5 1849 aa27.23■■□□□ 1.95
SMC4-221ENST00000489573 ALDH1L1O75891 902 aa27.22■■□□□ 1.95
SMC4-221ENST00000489573 GNAI3P08754 354 aa27.22■■□□□ 1.95
SMC4-221ENST00000489573 PTF1AQ7RTS3 328 aa27.22■■□□□ 1.95
SMC4-221ENST00000489573 ZNF831Q5JPB2 1677 aa27.22■■□□□ 1.95
SMC4-221ENST00000489573 PLBD2Q8NHP8 589 aa27.22■■□□□ 1.95
SMC4-221ENST00000489573 RXRBP28702 533 aa27.21■■□□□ 1.95
SMC4-221ENST00000489573 FAM196AQ6ZSG2 479 aa27.2■■□□□ 1.94
SMC4-221ENST00000489573 LINS1Q8NG48 757 aa27.2■■□□□ 1.94
SMC4-221ENST00000489573 METTL22Q9BUU2 404 aaPredicted RBP27.2■■□□□ 1.94
SMC4-221ENST00000489573 NEXNQ0ZGT2 675 aa27.19■■□□□ 1.94
SMC4-221ENST00000489573 ARFGEF2Q9Y6D5 1785 aa27.18■■□□□ 1.94
SMC4-221ENST00000489573 ITPK1Q13572 414 aa27.18■■□□□ 1.94
SMC4-221ENST00000489573 TTLL7Q6ZT98 887 aa27.18■■□□□ 1.94
Retrieved 100 of 20,778 RNA–protein pairs in 51 ms