RNA–Protein interactions for RNA: ENST00000489180.6

NPHP4-209, Transcript of nephrocystin 4, humanhuman

TSL 2

Gene NPHP4, Length 5,548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-209ENST00000489180 AKAP2Q9Y2D5 859 aa20.49■□□□□ 0.87
NPHP4-209ENST00000489180 DNAAF4Q8WXU2 420 aa20.49■□□□□ 0.87
NPHP4-209ENST00000489180 NAPBQ9H115 298 aa20.49■□□□□ 0.87
NPHP4-209ENST00000489180 TBC1D32Q96NH3 1257 aa20.49■□□□□ 0.87
NPHP4-209ENST00000489180 TRERF1Q96PN7 1200 aa20.49■□□□□ 0.87
NPHP4-209ENST00000489180 SNAPC4Q5SXM2 1469 aa20.48■□□□□ 0.87
NPHP4-209ENST00000489180 MPHOSPH10O00566 681 aaKnown RBP20.48■□□□□ 0.87
NPHP4-209ENST00000489180 STX6O43752 255 aa20.48■□□□□ 0.87
NPHP4-209ENST00000489180 MATR3P43243 847 aaKnown RBP eCLIP20.48■□□□□ 0.872e-6■■■■□ 26.1
NPHP4-209ENST00000489180 ZRSR2Q15696 482 aaKnown RBP20.48■□□□□ 0.87
NPHP4-209ENST00000489180 ISM2Q6H9L7 571 aa20.48■□□□□ 0.87
NPHP4-209ENST00000489180 TMC6Q7Z403 805 aa20.48■□□□□ 0.87
NPHP4-209ENST00000489180 NCOA1Q15788 1441 aa20.48■□□□□ 0.87
NPHP4-209ENST00000489180 GOLGA8BA8MQT2 603 aa20.48■□□□□ 0.87
NPHP4-209ENST00000489180 PTPN23Q9H3S7 1636 aa20.47■□□□□ 0.87
NPHP4-209ENST00000489180 IBSPP21815 317 aaPredicted RBP20.47■□□□□ 0.87
NPHP4-209ENST00000489180 CNNM3Q8NE01 707 aa20.47■□□□□ 0.87
NPHP4-209ENST00000489180 ADGRF5Q8IZF2 1346 aa20.47■□□□□ 0.87
NPHP4-209ENST00000489180 RAB11FIP4Q86YS3 637 aa20.47■□□□□ 0.87
NPHP4-209ENST00000489180 FAM83GA6ND36 823 aa20.47■□□□□ 0.87
NPHP4-209ENST00000489180 ZSCAN23Q3MJ62 389 aa20.47■□□□□ 0.87
NPHP4-209ENST00000489180 JAKMIP3Q5VZ66 844 aa20.47■□□□□ 0.87
NPHP4-209ENST00000489180 NUP88Q99567 741 aaPredicted RBP20.47■□□□□ 0.87
NPHP4-209ENST00000489180 CAMSAP2Q08AD1 1489 aa20.47■□□□□ 0.87
NPHP4-209ENST00000489180 CCDC144CPQ8IYA2 1237 aa20.46■□□□□ 0.87
NPHP4-209ENST00000489180 BMP2KLQ5H9B9 411 aa20.46■□□□□ 0.87
NPHP4-209ENST00000489180 GBP3Q9H0R5 595 aa20.46■□□□□ 0.87
NPHP4-209ENST00000489180 CGNQ9P2M7 1197 aaKnown RBP20.46■□□□□ 0.87
NPHP4-209ENST00000489180 SPDYE4A6NLX3 237 aa20.46■□□□□ 0.87
NPHP4-209ENST00000489180 SLC12A7Q9Y666 1083 aa20.46■□□□□ 0.87
NPHP4-209ENST00000489180 TOPBP1Q92547 1522 aa20.46■□□□□ 0.87
NPHP4-209ENST00000489180 ZNF213O14771 459 aa20.46■□□□□ 0.87
NPHP4-209ENST00000489180 ANKRD18AQ8IVF6 992 aa20.46■□□□□ 0.87
NPHP4-209ENST00000489180 FLIIQ13045 1269 aa20.46■□□□□ 0.87
NPHP4-209ENST00000489180 CCDC113Q9H0I3 377 aa20.46■□□□□ 0.87
NPHP4-209ENST00000489180 RANBP6O60518 1105 aaKnown RBP20.45■□□□□ 0.86
NPHP4-209ENST00000489180 PPP4R3BQ5MIZ7 849 aa20.45■□□□□ 0.86
NPHP4-209ENST00000489180 TTC22Q5TAA0 569 aa20.45■□□□□ 0.86
NPHP4-209ENST00000489180 PANK2Q9BZ23 570 aa20.45■□□□□ 0.86
NPHP4-209ENST00000489180 FKBP15Q5T1M5 1219 aa20.45■□□□□ 0.86
NPHP4-209ENST00000489180 STARD3NLO95772 234 aa20.45■□□□□ 0.86
NPHP4-209ENST00000489180 HMGB1P09429 215 aaKnown RBP20.45■□□□□ 0.86
NPHP4-209ENST00000489180 ZNF830Q96NB3 372 aaPredicted RBP20.45■□□□□ 0.86
NPHP4-209ENST00000489180 DISP3Q9P2K9 1392 aa20.44■□□□□ 0.86
NPHP4-209ENST00000489180 CACNA2D4Q7Z3S7 1137 aa20.44■□□□□ 0.86
NPHP4-209ENST00000489180 DDX19AQ9NUU7 478 aaKnown RBP20.44■□□□□ 0.86
NPHP4-209ENST00000489180 ABCC5O15440 1437 aa20.44■□□□□ 0.86
NPHP4-209ENST00000489180 KRI1Q8N9T8 703 aaKnown RBP20.44■□□□□ 0.86
NPHP4-209ENST00000489180 MBIPQ9NS73 344 aa20.44■□□□□ 0.86
NPHP4-209ENST00000489180 SEC63Q9UGP8 760 aaKnown RBP20.44■□□□□ 0.86
NPHP4-209ENST00000489180 GOLGA8AA7E2F4 631 aa20.44■□□□□ 0.86
NPHP4-209ENST00000489180 SSRP1Q08945 709 aaKnown RBP20.44■□□□□ 0.86
NPHP4-209ENST00000489180 CTAGE5O15320 804 aa20.44■□□□□ 0.86
NPHP4-209ENST00000489180 POLR3DP05423 398 aaPredicted RBP20.43■□□□□ 0.86
NPHP4-209ENST00000489180 UBA5Q9GZZ9 404 aa20.43■□□□□ 0.86
NPHP4-209ENST00000489180 MKNK2Q9HBH9 465 aa20.43■□□□□ 0.86
NPHP4-209ENST00000489180 CCDC141Q6ZP82 1450 aa20.43■□□□□ 0.86
NPHP4-209ENST00000489180 CCDC178Q5BJE1 867 aa20.43■□□□□ 0.86
NPHP4-209ENST00000489180 SHTN1A0MZ66 631 aa20.43■□□□□ 0.86
NPHP4-209ENST00000489180 GIMAP6Q6P9H5 292 aa20.43■□□□□ 0.86
NPHP4-209ENST00000489180 ANKLE2Q86XL3 938 aa20.43■□□□□ 0.86
NPHP4-209ENST00000489180 EVI5LQ96CN4 794 aa20.43■□□□□ 0.86
NPHP4-209ENST00000489180 GBP2P32456 591 aaPredicted RBP20.43■□□□□ 0.86
NPHP4-209ENST00000489180 STX1AQ16623 288 aa20.43■□□□□ 0.86
NPHP4-209ENST00000489180 GOLIM4O00461 696 aa20.42■□□□□ 0.86
NPHP4-209ENST00000489180 IFIT3O14879 490 aaKnown RBP20.42■□□□□ 0.86
NPHP4-209ENST00000489180 PTPRCP08575 1304 aa20.42■□□□□ 0.86
NPHP4-209ENST00000489180 HCLS1P14317 486 aaPredicted RBP20.42■□□□□ 0.86
NPHP4-209ENST00000489180 KCNH5Q8NCM2 988 aa20.42■□□□□ 0.86
NPHP4-209ENST00000489180 MAP3K2Q9Y2U5 619 aa20.42■□□□□ 0.86
NPHP4-209ENST00000489180 USP8P40818 1118 aa20.42■□□□□ 0.86
NPHP4-209ENST00000489180 HAND2P61296 217 aa20.41■□□□□ 0.86
NPHP4-209ENST00000489180 IFIT5Q13325 482 aaKnown RBP20.41■□□□□ 0.86
NPHP4-209ENST00000489180 KLHL40Q2TBA0 621 aa20.41■□□□□ 0.86
NPHP4-209ENST00000489180 ECHDC1Q9NTX5 307 aa20.41■□□□□ 0.86
NPHP4-209ENST00000489180 CTCFLQ8NI51 663 aaPredicted RBP20.41■□□□□ 0.86
NPHP4-209ENST00000489180 CCDC196A0A1B0GTZ2 297 aa20.4■□□□□ 0.86
NPHP4-209ENST00000489180 ZNF165P49910 485 aa20.4■□□□□ 0.86
NPHP4-209ENST00000489180 PHF23Q9BUL5 403 aaPredicted RBP20.4■□□□□ 0.86
NPHP4-209ENST00000489180 A0A087WZG4 1122 aa20.4■□□□□ 0.86
NPHP4-209ENST00000489180 DYDC1Q8WWB3 177 aa20.4■□□□□ 0.86
NPHP4-209ENST00000489180 TSG101Q99816 390 aa20.4■□□□□ 0.86
NPHP4-209ENST00000489180 SNRKQ9NRH2 765 aa20.4■□□□□ 0.86
NPHP4-209ENST00000489180 MRC2Q9UBG0 1479 aa20.4■□□□□ 0.86
NPHP4-209ENST00000489180 CAVIN4Q5BKX8 364 aa20.4■□□□□ 0.86
NPHP4-209ENST00000489180 LUZP1Q86V48 1076 aa20.4■□□□□ 0.86
NPHP4-209ENST00000489180 JARID2Q92833 1246 aaPredicted RBP20.4■□□□□ 0.86
NPHP4-209ENST00000489180 GOPCQ9HD26 462 aa20.4■□□□□ 0.86
NPHP4-209ENST00000489180 GTF2F1P35269 517 aaKnown RBP eCLIP20.4■□□□□ 0.862e-6■■■■■ 27.9
NPHP4-209ENST00000489180 MAP3K12Q12852 859 aa20.4■□□□□ 0.86
NPHP4-209ENST00000489180 NECAB1Q8N987 351 aa20.4■□□□□ 0.86
NPHP4-209ENST00000489180 BCCIPQ9P287 314 aaKnown RBP eCLIP20.4■□□□□ 0.86
NPHP4-209ENST00000489180 IFT140Q96RY7 1462 aa20.4■□□□□ 0.86
NPHP4-209ENST00000489180 MAP9Q49MG5 647 aa20.4■□□□□ 0.86
NPHP4-209ENST00000489180 TMX3Q96JJ7 454 aa20.4■□□□□ 0.86
NPHP4-209ENST00000489180 TMOD3Q9NYL9 352 aa20.4■□□□□ 0.86
NPHP4-209ENST00000489180 PPP1R42Q7Z4L9 355 aa20.39■□□□□ 0.86
NPHP4-209ENST00000489180 FBLN1P23142 703 aa20.39■□□□□ 0.85
NPHP4-209ENST00000489180 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP20.39■□□□□ 0.85
NPHP4-209ENST00000489180 ZHX1Q9UKY1 873 aaPredicted RBP20.39■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms