RNA–Protein interactions for RNA: ENST00000486159.5

TMEM39A-208, Transcript of transmembrane protein 39A, humanhuman

TSL 3

Gene TMEM39A, Length 826 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM39A-208ENST00000486159 RNMTO43148 476 aaKnown RBP12.64□□□□□ -0.39
TMEM39A-208ENST00000486159 DPEP1P16444 411 aa12.64□□□□□ -0.39
TMEM39A-208ENST00000486159 RFC4P35249 363 aa12.64□□□□□ -0.39
TMEM39A-208ENST00000486159 FKBP8Q14318 412 aa12.64□□□□□ -0.39
TMEM39A-208ENST00000486159 KIF13BQ9NQT8 1826 aa12.64□□□□□ -0.39
TMEM39A-208ENST00000486159 HMGB2P26583 209 aaKnown RBP12.63□□□□□ -0.39
TMEM39A-208ENST00000486159 DDR1Q08345 913 aa12.63□□□□□ -0.39
TMEM39A-208ENST00000486159 AKAP4Q5JQC9 854 aa12.63□□□□□ -0.39
TMEM39A-208ENST00000486159 SLC52A2Q9HAB3 445 aa12.63□□□□□ -0.39
TMEM39A-208ENST00000486159 PLEKHG2Q9H7P9 1386 aa12.63□□□□□ -0.39
TMEM39A-208ENST00000486159 ADAMTS7Q9UKP4 1686 aa12.63□□□□□ -0.39
TMEM39A-208ENST00000486159 ADCY9O60503 1353 aa12.62□□□□□ -0.39
TMEM39A-208ENST00000486159 DIAPH1O60610 1272 aaKnown RBP12.62□□□□□ -0.39
TMEM39A-208ENST00000486159 KCNA3P22001 575 aa12.62□□□□□ -0.39
TMEM39A-208ENST00000486159 TNS4Q8IZW8 715 aa12.62□□□□□ -0.39
TMEM39A-208ENST00000486159 NLGN1Q8N2Q7 840 aa12.62□□□□□ -0.39
TMEM39A-208ENST00000486159 BCS1LQ9Y276 419 aa12.62□□□□□ -0.39
TMEM39A-208ENST00000486159 C10orf71Q711Q0 1435 aa12.62□□□□□ -0.39
TMEM39A-208ENST00000486159 COL3A1P02461 1466 aaPredicted RBP12.6□□□□□ -0.39
TMEM39A-208ENST00000486159 PARP3Q9Y6F1 533 aa12.6□□□□□ -0.39
TMEM39A-208ENST00000486159 KCPQ6ZWJ8 1503 aa12.6□□□□□ -0.39
TMEM39A-208ENST00000486159 USP42Q9H9J4 1324 aaKnown RBP12.6□□□□□ -0.39
TMEM39A-208ENST00000486159 U2SURPO15042 1029 aaKnown RBP12.59□□□□□ -0.39
TMEM39A-208ENST00000486159 CYP19A1P11511 503 aaPredicted RBP12.59□□□□□ -0.39
TMEM39A-208ENST00000486159 HSPA6P17066 643 aa12.59□□□□□ -0.39
TMEM39A-208ENST00000486159 CHRNA5P30532 468 aa12.59□□□□□ -0.39
TMEM39A-208ENST00000486159 USPL1Q5W0Q7 1092 aa12.59□□□□□ -0.39
TMEM39A-208ENST00000486159 GPBP1L1Q9HC44 474 aaPredicted RBP12.59□□□□□ -0.39
TMEM39A-208ENST00000486159 CCDC87Q9NVE4 849 aa12.59□□□□□ -0.39
TMEM39A-208ENST00000486159 ZBTB1Q9Y2K1 713 aa12.59□□□□□ -0.39
TMEM39A-208ENST00000486159 BRCA1P38398 1863 aaKnown RBP12.59□□□□□ -0.39
TMEM39A-208ENST00000486159 KCNQ3O43525 872 aa12.58□□□□□ -0.4
TMEM39A-208ENST00000486159 TM4SF1P30408 202 aa12.58□□□□□ -0.4
TMEM39A-208ENST00000486159 TGFB2P61812 414 aa12.58□□□□□ -0.4
TMEM39A-208ENST00000486159 ARHGAP27Q6ZUM4 889 aa12.58□□□□□ -0.4
TMEM39A-208ENST00000486159 IL17REQ8NFR9 667 aa12.58□□□□□ -0.4
TMEM39A-208ENST00000486159 BCL2L12Q9HB09 334 aa12.58□□□□□ -0.4
TMEM39A-208ENST00000486159 MRC1P22897 1456 aa12.58□□□□□ -0.4
TMEM39A-208ENST00000486159 SOS1Q07889 1333 aaPredicted RBP12.58□□□□□ -0.4
TMEM39A-208ENST00000486159 POLRMTO00411 1230 aaKnown RBP12.57□□□□□ -0.4
TMEM39A-208ENST00000486159 FCHSD2O94868 740 aa12.57□□□□□ -0.4
TMEM39A-208ENST00000486159 PHACTR3Q96KR7 559 aa12.57□□□□□ -0.4
TMEM39A-208ENST00000486159 KIF3CO14782 793 aa12.56□□□□□ -0.4
TMEM39A-208ENST00000486159 CANXP27824 592 aaKnown RBP12.56□□□□□ -0.4
TMEM39A-208ENST00000486159 NFIXQ14938 502 aa12.56□□□□□ -0.4
TMEM39A-208ENST00000486159 AFDNP55196 1824 aaKnown RBP12.55□□□□□ -0.4
TMEM39A-208ENST00000486159 ZNF496Q96IT1 587 aaPredicted RBP12.55□□□□□ -0.4
TMEM39A-208ENST00000486159 UBR2Q8IWV8 1755 aa12.54□□□□□ -0.4
TMEM39A-208ENST00000486159 MKRN4PQ13434 485 aaPredicted RBP12.54□□□□□ -0.4
TMEM39A-208ENST00000486159 CCDC24Q8N4L8 307 aa12.54□□□□□ -0.4
TMEM39A-208ENST00000486159 COL15A1P39059 1388 aa12.54□□□□□ -0.4
TMEM39A-208ENST00000486159 PRAMEF22A3QJZ6 481 aa12.53□□□□□ -0.4
TMEM39A-208ENST00000486159 ZPR1O75312 459 aa12.53□□□□□ -0.4
TMEM39A-208ENST00000486159 PIP4K2AP48426 406 aaPredicted RBP12.53□□□□□ -0.4
TMEM39A-208ENST00000486159 C9orf131Q5VYM1 1079 aa12.53□□□□□ -0.4
TMEM39A-208ENST00000486159 BICDL1Q6ZP65 573 aa12.53□□□□□ -0.4
TMEM39A-208ENST00000486159 NMRK2Q9NPI5 230 aa12.53□□□□□ -0.4
TMEM39A-208ENST00000486159 NARFQ9UHQ1 456 aa12.53□□□□□ -0.4
TMEM39A-208ENST00000486159 NPC1L1Q9UHC9 1359 aa12.53□□□□□ -0.4
TMEM39A-208ENST00000486159 SIPA1L3O60292 1781 aaPredicted RBP12.53□□□□□ -0.4
TMEM39A-208ENST00000486159 GNAT3A8MTJ3 354 aa12.52□□□□□ -0.41
TMEM39A-208ENST00000486159 A1BGP04217 495 aa12.52□□□□□ -0.41
TMEM39A-208ENST00000486159 PRKAR2BP31323 418 aa12.52□□□□□ -0.41
TMEM39A-208ENST00000486159 RSPH6AQ9H0K4 717 aa12.52□□□□□ -0.41
TMEM39A-208ENST00000486159 PIM2Q9P1W9 311 aa12.52□□□□□ -0.41
TMEM39A-208ENST00000486159 ARFGEF1Q9Y6D6 1849 aa12.52□□□□□ -0.41
TMEM39A-208ENST00000486159 CARMIL3Q8ND23 1372 aa12.52□□□□□ -0.41
TMEM39A-208ENST00000486159 SERPINB2P05120 415 aa12.51□□□□□ -0.41
TMEM39A-208ENST00000486159 PPP2R1AP30153 589 aa12.51□□□□□ -0.41
TMEM39A-208ENST00000486159 RASSF7Q02833 373 aa12.51□□□□□ -0.41
TMEM39A-208ENST00000486159 DCTN1Q14203 1278 aa12.51□□□□□ -0.41
TMEM39A-208ENST00000486159 DALRD3Q5D0E6 543 aaKnown RBP12.51□□□□□ -0.41
TMEM39A-208ENST00000486159 ZNF790Q6PG37 636 aa12.51□□□□□ -0.41
TMEM39A-208ENST00000486159 TBC1D2BQ9UPU7 963 aa12.51□□□□□ -0.41
TMEM39A-208ENST00000486159 EIF5P55010 431 aaKnown RBP12.5□□□□□ -0.41
TMEM39A-208ENST00000486159 TEFQ10587 303 aa12.5□□□□□ -0.41
TMEM39A-208ENST00000486159 TBC1D9BQ66K14 1250 aa12.5□□□□□ -0.41
TMEM39A-208ENST00000486159 VSIG10Q8N0Z9 540 aa12.5□□□□□ -0.41
TMEM39A-208ENST00000486159 ZNF330Q9Y3S2 320 aaPredicted RBP12.5□□□□□ -0.41
TMEM39A-208ENST00000486159 HEG1Q9ULI3 1381 aa12.5□□□□□ -0.41
TMEM39A-208ENST00000486159 NRXN2Q9P2S2 1712 aa12.5□□□□□ -0.41
TMEM39A-208ENST00000486159 SBF1O95248 1867 aa12.49□□□□□ -0.41
TMEM39A-208ENST00000486159 MCM10Q7L590 875 aa12.49□□□□□ -0.41
TMEM39A-208ENST00000486159 TTC5Q8N0Z6 440 aa12.49□□□□□ -0.41
TMEM39A-208ENST00000486159 GAS2L2Q8NHY3 880 aa12.49□□□□□ -0.41
TMEM39A-208ENST00000486159 USP16Q9Y5T5 823 aa12.49□□□□□ -0.41
TMEM39A-208ENST00000486159 CEMIPQ8WUJ3 1361 aa12.48□□□□□ -0.41
TMEM39A-208ENST00000486159 YTHDC1Q96MU7 727 aaKnown RBP12.48□□□□□ -0.41
TMEM39A-208ENST00000486159 PRKRIP1Q9H875 184 aaPredicted RBP12.48□□□□□ -0.41
TMEM39A-208ENST00000486159 ANKRD31Q8N7Z5 1873 aa12.48□□□□□ -0.41
TMEM39A-208ENST00000486159 BTBD11A6QL63 1104 aa12.47□□□□□ -0.41
TMEM39A-208ENST00000486159 U2AF1L5P0DN76 240 aaPredicted RBP12.47□□□□□ -0.41
TMEM39A-208ENST00000486159 HTRA3P83110 453 aa12.47□□□□□ -0.41
TMEM39A-208ENST00000486159 U2AF1Q01081 240 aaKnown RBP eCLIP12.47□□□□□ -0.41
TMEM39A-208ENST00000486159 C2CD5Q86YS7 1000 aa12.47□□□□□ -0.41
TMEM39A-208ENST00000486159 MIS18AQ9NYP9 233 aa12.47□□□□□ -0.41
TMEM39A-208ENST00000486159 RNF181Q9P0P0 153 aa12.47□□□□□ -0.41
TMEM39A-208ENST00000486159 STARD3NLO95772 234 aa12.46□□□□□ -0.41
TMEM39A-208ENST00000486159 RRAGCQ9HB90 399 aa12.46□□□□□ -0.41
TMEM39A-208ENST00000486159 CCDC88AQ3V6T2 1871 aa12.45□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms