RNA–Protein interactions for RNA: ENST00000478658.1

USF3-202, Transcript of upstream transcription factor family member 3, humanhuman

APPRIS P2 TSL 5 BASIC

Gene USF3, Length 8,461 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF3-202ENST00000478658 VPS37BQ9H9H4 285 aa6.24□□□□□ -1.41
USF3-202ENST00000478658 NUCB1Q02818 461 aa6.23□□□□□ -1.41
USF3-202ENST00000478658 ARHGAP24Q8N264 748 aa6.23□□□□□ -1.41
USF3-202ENST00000478658 MMRN2Q9H8L6 949 aa6.23□□□□□ -1.41
USF3-202ENST00000478658 STK26Q9P289 416 aa6.23□□□□□ -1.41
USF3-202ENST00000478658 PPP1R9AQ9ULJ8 1098 aa6.23□□□□□ -1.41
USF3-202ENST00000478658 TRHP20396 242 aaPredicted RBP6.23□□□□□ -1.41
USF3-202ENST00000478658 MRE11P49959 708 aa6.23□□□□□ -1.41
USF3-202ENST00000478658 IPO4Q8TEX9 1081 aaKnown RBP6.23□□□□□ -1.41
USF3-202ENST00000478658 TRIM63Q969Q1 353 aa6.23□□□□□ -1.41
USF3-202ENST00000478658 HDAC9Q9UKV0 1011 aa6.23□□□□□ -1.41
USF3-202ENST00000478658 ZSCAN12O43309 604 aa6.23□□□□□ -1.41
USF3-202ENST00000478658 INPP1P49441 399 aa6.23□□□□□ -1.41
USF3-202ENST00000478658 CCDC12Q8WUD4 166 aaPredicted RBP6.23□□□□□ -1.41
USF3-202ENST00000478658 ERCC5P28715 1186 aaPredicted RBP6.23□□□□□ -1.41
USF3-202ENST00000478658 CALCOCO1Q9P1Z2 691 aa6.23□□□□□ -1.41
USF3-202ENST00000478658 E9PMD0 336 aa6.23□□□□□ -1.41
USF3-202ENST00000478658 CEBPZQ03701 1054 aaKnown RBP6.23□□□□□ -1.41
USF3-202ENST00000478658 PRPF38AQ8NAV1 312 aaKnown RBP6.23□□□□□ -1.41
USF3-202ENST00000478658 SPATS2LQ9NUQ6 558 aaKnown RBP6.23□□□□□ -1.41
USF3-202ENST00000478658 LUC7L2Q9Y383 392 aaKnown RBP6.23□□□□□ -1.41
USF3-202ENST00000478658 CCDC84Q86UT8 332 aaPredicted RBP6.23□□□□□ -1.41
USF3-202ENST00000478658 CCDC25Q86WR0 208 aa6.23□□□□□ -1.41
USF3-202ENST00000478658 GBP7Q8N8V2 638 aaPredicted RBP6.23□□□□□ -1.41
USF3-202ENST00000478658 FBF1Q8TES7 1133 aa6.23□□□□□ -1.41
USF3-202ENST00000478658 TXNDC16Q9P2K2 825 aa6.23□□□□□ -1.41
USF3-202ENST00000478658 THEGQ9P2T0 379 aa6.23□□□□□ -1.41
USF3-202ENST00000478658 IPO5O00410 1097 aaKnown RBP6.22□□□□□ -1.41
USF3-202ENST00000478658 PSMC4P43686 418 aa6.22□□□□□ -1.41
USF3-202ENST00000478658 TMEM266Q2M3C6 531 aa6.22□□□□□ -1.41
USF3-202ENST00000478658 EVI5LQ96CN4 794 aa6.22□□□□□ -1.41
USF3-202ENST00000478658 CCDC138Q96M89 665 aa6.22□□□□□ -1.41
USF3-202ENST00000478658 DCAF1Q9Y4B6 1507 aa6.22□□□□□ -1.41
USF3-202ENST00000478658 HSPA4P34932 840 aa6.22□□□□□ -1.41
USF3-202ENST00000478658 CTR9Q6PD62 1173 aa6.22□□□□□ -1.41
USF3-202ENST00000478658 C16orf71Q8IYS4 520 aaPredicted RBP6.22□□□□□ -1.41
USF3-202ENST00000478658 ZSCAN16Q9H4T2 348 aaPredicted RBP6.22□□□□□ -1.41
USF3-202ENST00000478658 VPS37CA5D8V6 355 aaPredicted RBP6.22□□□□□ -1.41
USF3-202ENST00000478658 RAP1GDS1P52306 607 aa6.22□□□□□ -1.41
USF3-202ENST00000478658 CDR2Q01850 454 aa6.22□□□□□ -1.41
USF3-202ENST00000478658 APLFQ8IW19 511 aaPredicted RBP6.22□□□□□ -1.41
USF3-202ENST00000478658 NGDNQ8NEJ9 315 aaKnown RBP6.22□□□□□ -1.41
USF3-202ENST00000478658 SMARCC2Q8TAQ2 1214 aa6.22□□□□□ -1.41
USF3-202ENST00000478658 TNPO1Q92973 898 aaKnown RBP6.22□□□□□ -1.41
USF3-202ENST00000478658 KRT23Q9C075 422 aa6.22□□□□□ -1.41
USF3-202ENST00000478658 WDR46O15213 610 aaKnown RBP6.22□□□□□ -1.41
USF3-202ENST00000478658 ZNF131P52739 623 aa6.22□□□□□ -1.41
USF3-202ENST00000478658 BZW1Q7L1Q6 419 aaKnown RBP6.22□□□□□ -1.41
USF3-202ENST00000478658 TMTC1Q8IUR5 882 aa6.22□□□□□ -1.41
USF3-202ENST00000478658 CNTROBQ8N137 903 aa6.22□□□□□ -1.41
USF3-202ENST00000478658 RTEL1Q9NZ71 1219 aa6.22□□□□□ -1.41
USF3-202ENST00000478658 TACC3Q9Y6A5 838 aa6.22□□□□□ -1.41
USF3-202ENST00000478658 CETN3O15182 167 aa6.22□□□□□ -1.41
USF3-202ENST00000478658 DTNBO60941 627 aa6.22□□□□□ -1.41
USF3-202ENST00000478658 CCDC122Q5T0U0 273 aa6.22□□□□□ -1.41
USF3-202ENST00000478658 RNF187Q5TA31 235 aaPredicted RBP6.22□□□□□ -1.41
USF3-202ENST00000478658 TANGO6Q9C0B7 1094 aa6.22□□□□□ -1.41
USF3-202ENST00000478658 PAFAH1B1P43034 410 aa6.22□□□□□ -1.41
USF3-202ENST00000478658 FNBP4Q8N3X1 1017 aaPredicted RBP6.22□□□□□ -1.41
USF3-202ENST00000478658 RB1CC1Q8TDY2 1594 aa6.22□□□□□ -1.41
USF3-202ENST00000478658 STK10O94804 968 aaKnown RBP6.21□□□□□ -1.41
USF3-202ENST00000478658 CROCCP2Q86T23 111 aa6.21□□□□□ -1.41
USF3-202ENST00000478658 CTNNBL1Q8WYA6 563 aaPredicted RBP6.21□□□□□ -1.41
USF3-202ENST00000478658 PNMA2Q9UL42 364 aa6.21□□□□□ -1.41
USF3-202ENST00000478658 HYOU1Q9Y4L1 999 aa6.21□□□□□ -1.41
USF3-202ENST00000478658 HOXC8P31273 242 aa6.21□□□□□ -1.41
USF3-202ENST00000478658 AMPD3Q01432 767 aa6.21□□□□□ -1.41
USF3-202ENST00000478658 LMNB2Q03252 620 aa6.21□□□□□ -1.41
USF3-202ENST00000478658 APOBRQ0VD83 1088 aa6.21□□□□□ -1.41
USF3-202ENST00000478658 TMC2Q8TDI7 906 aa6.21□□□□□ -1.41
USF3-202ENST00000478658 BICD1Q96G01 975 aa6.21□□□□□ -1.41
USF3-202ENST00000478658 CRCPO75575 148 aa6.21□□□□□ -1.42
USF3-202ENST00000478658 ZNF449Q6P9G9 518 aa6.21□□□□□ -1.42
USF3-202ENST00000478658 TBC1D5Q92609 795 aa6.21□□□□□ -1.42
USF3-202ENST00000478658 EPSTI1Q96J88 318 aa6.21□□□□□ -1.42
USF3-202ENST00000478658 LNPKQ9C0E8 428 aa6.21□□□□□ -1.42
USF3-202ENST00000478658 MAP3K7O43318 606 aa6.21□□□□□ -1.42
USF3-202ENST00000478658 SLC8A3P57103 927 aa6.21□□□□□ -1.42
USF3-202ENST00000478658 CTCFLQ8NI51 663 aaPredicted RBP6.21□□□□□ -1.42
USF3-202ENST00000478658 CSRNP2Q9H175 543 aa6.21□□□□□ -1.42
USF3-202ENST00000478658 CCDC68Q9H2F9 335 aa6.21□□□□□ -1.42
USF3-202ENST00000478658 SBDSQ9Y3A5 250 aaKnown RBP eCLIP6.21□□□□□ -1.42
USF3-202ENST00000478658 ANKRD30AQ9BXX3 1397 aa6.21□□□□□ -1.42
USF3-202ENST00000478658 CIB2O75838 187 aa6.21□□□□□ -1.42
USF3-202ENST00000478658 FAM43AQ8N2R8 423 aa6.21□□□□□ -1.42
USF3-202ENST00000478658 HYPKQ9NX55 129 aa6.21□□□□□ -1.42
USF3-202ENST00000478658 XRCC6P12956 609 aaKnown RBP eCLIP6.21□□□□□ -1.42
USF3-202ENST00000478658 TAF12Q16514 161 aa6.21□□□□□ -1.42
USF3-202ENST00000478658 SPAG5Q96R06 1193 aa6.21□□□□□ -1.42
USF3-202ENST00000478658 TEX12Q9BXU0 123 aa6.21□□□□□ -1.42
USF3-202ENST00000478658 DIABLOQ9NR28 239 aa6.21□□□□□ -1.42
USF3-202ENST00000478658 PPFIA3O75145 1194 aa6.21□□□□□ -1.42
USF3-202ENST00000478658 IVLP07476 585 aa6.2□□□□□ -1.42
USF3-202ENST00000478658 PUS7Q96PZ0 661 aaKnown RBP6.2□□□□□ -1.42
USF3-202ENST00000478658 PPP2R5DQ14738 602 aa6.2□□□□□ -1.42
USF3-202ENST00000478658 SETDB1Q15047 1291 aa6.2□□□□□ -1.42
USF3-202ENST00000478658 ARHGAP30Q7Z6I6 1101 aaPredicted RBP6.2□□□□□ -1.42
USF3-202ENST00000478658 BAG4O95429 457 aaKnown RBP6.2□□□□□ -1.42
USF3-202ENST00000478658 S100BP04271 92 aaPredicted RBP6.2□□□□□ -1.42
USF3-202ENST00000478658 DDX5P17844 614 aaKnown RBP6.2□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms